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Conserved domains on  [gi|1306253033|ref|NP_001345840|]
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kinesin-like protein KIFC2 isoform 2 precursor [Mus musculus]

Protein Classification

kinesin family protein( domain architecture ID 10102659)

kinesin family protein is a microtubule-dependent molecular motor that plays an important role in intracellular transport and in cell division and has ATPase-containing motor domain; similar to carboxy-terminal kinesins that contains a C-terminal domain responsible for the motor activity (it hydrolyzes ATP and binds microtubules)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
390-717 6.05e-163

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


:

Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 474.39  E-value: 6.05e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 390 KGNIRVLCRLRPA----EGQPSSLVSVEPGQGGTITTCYRG-RQHRFRLDWVFPQDASQEEVFRQLEPAVLSCLQGYSVC 464
Cdd:cd01366     1 KGNIRVFCRVRPLlpseENEDTSHITFPDEDGQTIELTSIGaKQKEFSFDKVFDPEASQEDVFEEVSPLVQSALDGYNVC 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 465 IFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGT----GGHHHVTLSMVEIYNEAVRDLLATG--PPERLVVRQGP 538
Cdd:cd01366    81 IFAYGQTGSGKTYTMEGPPESPGIIPRALQELFNTIKElkekGWSYTIKASMLEIYNETIRDLLAPGnaPQKKLEIRHDS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 539 AgQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQGITGTLHLVDLAGSER 618
Cdd:cd01366   161 E-KGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNLQTGEISVGKLNLVDLAGSER 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 619 VWKAGVAspvqrdpngARRLREAQAINRSLLALGGVMAALRARRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAED 698
Cdd:cd01366   240 LNKSGAT---------GDRLKETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGGNSKTLMFVNISPAESN 310
                         330
                  ....*....|....*....
gi 1306253033 699 LGETICSLKFAERVGQVEL 717
Cdd:cd01366   311 LNETLNSLRFASKVNSCEL 329
 
Name Accession Description Interval E-value
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
390-717 6.05e-163

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 474.39  E-value: 6.05e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 390 KGNIRVLCRLRPA----EGQPSSLVSVEPGQGGTITTCYRG-RQHRFRLDWVFPQDASQEEVFRQLEPAVLSCLQGYSVC 464
Cdd:cd01366     1 KGNIRVFCRVRPLlpseENEDTSHITFPDEDGQTIELTSIGaKQKEFSFDKVFDPEASQEDVFEEVSPLVQSALDGYNVC 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 465 IFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGT----GGHHHVTLSMVEIYNEAVRDLLATG--PPERLVVRQGP 538
Cdd:cd01366    81 IFAYGQTGSGKTYTMEGPPESPGIIPRALQELFNTIKElkekGWSYTIKASMLEIYNETIRDLLAPGnaPQKKLEIRHDS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 539 AgQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQGITGTLHLVDLAGSER 618
Cdd:cd01366   161 E-KGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNLQTGEISVGKLNLVDLAGSER 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 619 VWKAGVAspvqrdpngARRLREAQAINRSLLALGGVMAALRARRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAED 698
Cdd:cd01366   240 LNKSGAT---------GDRLKETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGGNSKTLMFVNISPAESN 310
                         330
                  ....*....|....*....
gi 1306253033 699 LGETICSLKFAERVGQVEL 717
Cdd:cd01366   311 LNETLNSLRFASKVNSCEL 329
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
392-718 1.59e-127

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 383.46  E-value: 1.59e-127
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033  392 NIRVLCRLRPAEGQPS-----SLVSVEPGQGGTITTCY---RGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYS 462
Cdd:smart00129   1 NIRVVVRVRPLNKREKsrkspSVVPFPDKVGKTLTVRSpknRQGEKKFTFDKVFDATASQEDVFEETaAPLVDSVLEGYN 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033  463 VCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFR---EMGTGGHHHVTLSMVEIYNEAVRDLLATGPPERLVVRQgpa 539
Cdd:smart00129  81 ATIFAYGQTGSGKTYTMIGTPDSPGIIPRALKDLFEkidKREEGWQFSVKVSYLEIYNEKIRDLLNPSSKKLEIRED--- 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033  540 GQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRA--QGITGTLHLVDLAGSE 617
Cdd:smart00129 158 EKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSsgSGKASKLNLVDLAGSE 237
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033  618 RVWKAGvaspvqrdpNGARRLREAQAINRSLLALGGVMAALRA--RRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTR 695
Cdd:smart00129 238 RAKKTG---------AEGDRLKEAGNINKSLSALGNVINALAQhsKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANVSPS 308
                          330       340
                   ....*....|....*....|...
gi 1306253033  696 AEDLGETICSLKFAERVGQVELG 718
Cdd:smart00129 309 SSNLEETLSTLRFASRAKEIKNK 331
Kinesin pfam00225
Kinesin motor domain;
398-715 4.32e-124

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 374.60  E-value: 4.32e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 398 RLRPA--------EGQPSSLVSVEPGQGGTITTCYRGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYSVCIFTY 468
Cdd:pfam00225   1 RVRPLnerekergSSVIVSVESVDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETaKPLVESVLEGYNVTIFAY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 469 GQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGTGGHH---HVTLSMVEIYNEAVRDLLATGPPERLVVRQGPAGQGGIQ 545
Cdd:pfam00225  81 GQTGSGKTYTMEGSDEQPGIIPRALEDLFDRIQKTKERsefSVKVSYLEIYNEKIRDLLSPSNKNKRKLRIREDPKKGVY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 546 VAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRA---ASPPRAQGITGTLHLVDLAGSERVWKA 622
Cdd:pfam00225 161 VKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQrnrSTGGEESVKTGKLNLVDLAGSERASKT 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 623 GVAspvqrdpnGARRLREAQAINRSLLALGGVMAALRA-RRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAEDLGE 701
Cdd:pfam00225 241 GAA--------GGQRLKEAANINKSLSALGNVISALADkKSKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSSNYEE 312
                         330
                  ....*....|....
gi 1306253033 702 TICSLKFAERVGQV 715
Cdd:pfam00225 313 TLSTLRFASRAKNI 326
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
370-711 1.32e-59

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 211.91  E-value: 1.32e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 370 QLSEGNQAPPTGCSGRLLELKGNIRVLCRLRPaEGQPSSLVSVEPGQGGTITTCYRGRqhrFRLDWVFPQDASQEEVFRQ 449
Cdd:COG5059     1 QSSDNNSPLKSRLSSRNEKSVSDIKSTIRIIP-GELGERLINTSKKSHVSLEKSKEGT---YAFDKVFGPSATQEDVYEE 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 450 LEPAVL-SCLQGYSVCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREM---GTGGHHHVTLSMVEIYNEAVRDLLA 525
Cdd:COG5059    77 TIKPLIdSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLedlSMTKDFAVSISYLEIYNEKIYDLLS 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 526 TGPPERLVVRQgpaGQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLraASPPRAQGI- 604
Cdd:COG5059   157 PNEESLNIRED---SLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIEL--ASKNKVSGTs 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 605 -TGTLHLVDLAGSERVWKAGvaspvqrdpNGARRLREAQAINRSLLALGGVMAALRARRP--HVPFRDSQLTRLLQPALC 681
Cdd:COG5059   232 eTSKLSLVDLAGSERAARTG---------NRGTRLKEGASINKSLLTLGNVINALGDKKKsgHIPYRESKLTRLLQDSLG 302
                         330       340       350
                  ....*....|....*....|....*....|
gi 1306253033 682 AGTTAVLLLQISTRAEDLGETICSLKFAER 711
Cdd:COG5059   303 GNCNTRVICTISPSSNSFEETINTLKFASR 332
PLN03188 PLN03188
kinesin-12 family protein; Provisional
393-711 7.38e-42

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 165.11  E-value: 7.38e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033  393 IRVLCRLRPAEGQPSSLVSVEPGQGGTITTcyrgRQHRFRLDWVFPQDASQEEVFrQL--EPAVLSCLQGYSVCIFTYGQ 470
Cdd:PLN03188   100 VKVIVRMKPLNKGEEGEMIVQKMSNDSLTI----NGQTFTFDSIADPESTQEDIF-QLvgAPLVENCLAGFNSSVFAYGQ 174
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033  471 TGTGKTYSMEGPP----------EDPGIAPRALQLLFREMGTGGHHHVT--------LSMVEIYNEAVRDLLatGPPER- 531
Cdd:PLN03188   175 TGSGKTYTMWGPAnglleehlsgDQQGLTPRVFERLFARINEEQIKHADrqlkyqcrCSFLEIYNEQITDLL--DPSQKn 252
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033  532 LVVRQGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQGI----TGT 607
Cdd:PLN03188   253 LQIREDV--KSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLssfkTSR 330
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033  608 LHLVDLAGSERVWKAGVAspvqrdpngARRLREAQAINRSLLALGGVMAAL-----RARRPHVPFRDSQLTRLLQPALCA 682
Cdd:PLN03188   331 INLVDLAGSERQKLTGAA---------GDRLKEAGNINRSLSQLGNLINILaeisqTGKQRHIPYRDSRLTFLLQESLGG 401
                          330       340
                   ....*....|....*....|....*....
gi 1306253033  683 GTTAVLLLQISTRAEDLGETICSLKFAER 711
Cdd:PLN03188   402 NAKLAMVCAISPSQSCKSETFSTLRFAQR 430
 
Name Accession Description Interval E-value
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
390-717 6.05e-163

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 474.39  E-value: 6.05e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 390 KGNIRVLCRLRPA----EGQPSSLVSVEPGQGGTITTCYRG-RQHRFRLDWVFPQDASQEEVFRQLEPAVLSCLQGYSVC 464
Cdd:cd01366     1 KGNIRVFCRVRPLlpseENEDTSHITFPDEDGQTIELTSIGaKQKEFSFDKVFDPEASQEDVFEEVSPLVQSALDGYNVC 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 465 IFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGT----GGHHHVTLSMVEIYNEAVRDLLATG--PPERLVVRQGP 538
Cdd:cd01366    81 IFAYGQTGSGKTYTMEGPPESPGIIPRALQELFNTIKElkekGWSYTIKASMLEIYNETIRDLLAPGnaPQKKLEIRHDS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 539 AgQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQGITGTLHLVDLAGSER 618
Cdd:cd01366   161 E-KGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNLQTGEISVGKLNLVDLAGSER 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 619 VWKAGVAspvqrdpngARRLREAQAINRSLLALGGVMAALRARRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAED 698
Cdd:cd01366   240 LNKSGAT---------GDRLKETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGGNSKTLMFVNISPAESN 310
                         330
                  ....*....|....*....
gi 1306253033 699 LGETICSLKFAERVGQVEL 717
Cdd:cd01366   311 LNETLNSLRFASKVNSCEL 329
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
392-718 1.59e-127

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 383.46  E-value: 1.59e-127
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033  392 NIRVLCRLRPAEGQPS-----SLVSVEPGQGGTITTCY---RGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYS 462
Cdd:smart00129   1 NIRVVVRVRPLNKREKsrkspSVVPFPDKVGKTLTVRSpknRQGEKKFTFDKVFDATASQEDVFEETaAPLVDSVLEGYN 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033  463 VCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFR---EMGTGGHHHVTLSMVEIYNEAVRDLLATGPPERLVVRQgpa 539
Cdd:smart00129  81 ATIFAYGQTGSGKTYTMIGTPDSPGIIPRALKDLFEkidKREEGWQFSVKVSYLEIYNEKIRDLLNPSSKKLEIRED--- 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033  540 GQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRA--QGITGTLHLVDLAGSE 617
Cdd:smart00129 158 EKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSsgSGKASKLNLVDLAGSE 237
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033  618 RVWKAGvaspvqrdpNGARRLREAQAINRSLLALGGVMAALRA--RRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTR 695
Cdd:smart00129 238 RAKKTG---------AEGDRLKEAGNINKSLSALGNVINALAQhsKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANVSPS 308
                          330       340
                   ....*....|....*....|...
gi 1306253033  696 AEDLGETICSLKFAERVGQVELG 718
Cdd:smart00129 309 SSNLEETLSTLRFASRAKEIKNK 331
Kinesin pfam00225
Kinesin motor domain;
398-715 4.32e-124

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 374.60  E-value: 4.32e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 398 RLRPA--------EGQPSSLVSVEPGQGGTITTCYRGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYSVCIFTY 468
Cdd:pfam00225   1 RVRPLnerekergSSVIVSVESVDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETaKPLVESVLEGYNVTIFAY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 469 GQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGTGGHH---HVTLSMVEIYNEAVRDLLATGPPERLVVRQGPAGQGGIQ 545
Cdd:pfam00225  81 GQTGSGKTYTMEGSDEQPGIIPRALEDLFDRIQKTKERsefSVKVSYLEIYNEKIRDLLSPSNKNKRKLRIREDPKKGVY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 546 VAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRA---ASPPRAQGITGTLHLVDLAGSERVWKA 622
Cdd:pfam00225 161 VKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQrnrSTGGEESVKTGKLNLVDLAGSERASKT 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 623 GVAspvqrdpnGARRLREAQAINRSLLALGGVMAALRA-RRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAEDLGE 701
Cdd:pfam00225 241 GAA--------GGQRLKEAANINKSLSALGNVISALADkKSKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSSNYEE 312
                         330
                  ....*....|....
gi 1306253033 702 TICSLKFAERVGQV 715
Cdd:pfam00225 313 TLSTLRFASRAKNI 326
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
392-712 1.86e-103

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 321.13  E-value: 1.86e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 392 NIRVLCRLRPAEGQ----PSSLVSVEPGQGGTITTCYRGRQ--HRFRLDWVFPQDASQEEVFRQLEPAVL-SCLQGYSVC 464
Cdd:cd00106     1 NVRVAVRVRPLNGRearsAKSVISVDGGKSVVLDPPKNRVAppKTFAFDAVFDSTSTQEEVYEGTAKPLVdSALEGYNGT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 465 IFTYGQTGTGKTYSMEG-PPEDPGIAPRALQLLFREMGTGGHH----HVTLSMVEIYNEAVRDLLATGPPERLVVRqgPA 539
Cdd:cd00106    81 IFAYGQTGSGKTYTMLGpDPEQRGIIPRALEDIFERIDKRKETkssfSVSASYLEIYNEKIYDLLSPVPKKPLSLR--ED 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 540 GQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAA--SPPRAQGITGTLHLVDLAGSE 617
Cdd:cd00106   159 PKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRnrEKSGESVTSSKLNLVDLAGSE 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 618 RVWKAGVASpvqrdpngaRRLREAQAINRSLLALGGVMAALRARR-PHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRA 696
Cdd:cd00106   239 RAKKTGAEG---------DRLKEGGNINKSLSALGKVISALADGQnKHIPYRDSKLTRLLQDSLGGNSKTIMIACISPSS 309
                         330
                  ....*....|....*.
gi 1306253033 697 EDLGETICSLKFAERV 712
Cdd:cd00106   310 ENFEETLSTLRFASRA 325
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
393-711 6.24e-75

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 246.47  E-value: 6.24e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 393 IRVLCRLRP------AEGqPSSLVSVEPGQGGTITtcyrGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYSVCI 465
Cdd:cd01372     3 VRVAVRVRPllpkeiIEG-CRICVSFVPGEPQVTV----GTDKSFTFDYVFDPSTEQEEVYNTCvAPLVDGLFEGYNATV 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 466 FTYGQTGTGKTYSM------EGPPEDPGIAPRALQLLFREMGTGGHHH---VTLSMVEIYNEAVRDLLATGPPER--LVV 534
Cdd:cd01372    78 LAYGQTGSGKTYTMgtaytaEEDEEQVGIIPRAIQHIFKKIEKKKDTFefqLKVSFLEIYNEEIRDLLDPETDKKptISI 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 535 RQGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRA------ASPPRAQG----I 604
Cdd:cd01372   158 REDS--KGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQtkkngpIAPMSADDknstF 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 605 TGTLHLVDLAGSERVWKAGVAspvqrdpngARRLREAQAINRSLLALGGVMAAL---RARRPHVPFRDSQLTRLLQPALC 681
Cdd:cd01372   236 TSKFHFVDLAGSERLKRTGAT---------GDRLKEGISINSGLLALGNVISALgdeSKKGAHVPYRDSKLTRLLQDSLG 306
                         330       340       350
                  ....*....|....*....|....*....|
gi 1306253033 682 AGTTAVLLLQISTRAEDLGETICSLKFAER 711
Cdd:cd01372   307 GNSHTLMIACVSPADSNFEETLNTLKYANR 336
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
392-715 6.13e-73

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 241.21  E-value: 6.13e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 392 NIRVLCRLRPAEGQP-----SSLVSVEPGQGGTITTCYRGRQHR----FRLDWVFPQDASQEEVFRQ-LEPAVLSCLQGY 461
Cdd:cd01371     2 NVKVVVRCRPLNGKEkaagaLQIVDVDEKRGQVSVRNPKATANEppktFTFDAVFDPNSKQLDVYDEtARPLVDSVLEGY 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 462 SVCIFTYGQTGTGKTYSMEG---PPEDPGIAPRALQLLFREMGTGGHHH---VTLSMVEIYNEAVRDLLATGPPERLVVR 535
Cdd:cd01371    82 NGTIFAYGQTGTGKTYTMEGkreDPELRGIIPNSFAHIFGHIARSQNNQqflVRVSYLEIYNEEIRDLLGKDQTKRLELK 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 536 QGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAAS--PPRAQGIT-GTLHLVD 612
Cdd:cd01371   162 ERP--DTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIECSEkgEDGENHIRvGKLNLVD 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 613 LAGSERVWKAGVaspvqrdpnGARRLREAQAINRSLLALGGVMAAL-RARRPHVPFRDSQLTRLLQPALCAGTTAVLLLQ 691
Cdd:cd01371   240 LAGSERQSKTGA---------TGERLKEATKINLSLSALGNVISALvDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCAN 310
                         330       340
                  ....*....|....*....|....
gi 1306253033 692 ISTRAEDLGETICSLKFAERVGQV 715
Cdd:cd01371   311 IGPADYNYDETLSTLRYANRAKNI 334
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
392-711 1.89e-71

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 237.61  E-value: 1.89e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 392 NIRVLCRLRP---AEGQPSSLVSVE-PGQGGTITTCYRG-----RQHRFRLDWVFPQDASQEEVFRQ-LEPAVLSCLQGY 461
Cdd:cd01364     3 NIQVVVRCRPfnlRERKASSHSVVEvDPVRKEVSVRTGGladksSTKTYTFDMVFGPEAKQIDVYRSvVCPILDEVLMGY 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 462 SVCIFTYGQTGTGKTYSMEGP-----------PEDPGIAPRALQLLFREM-GTGGHHHVTLSMVEIYNEAVRDLLAT--G 527
Cdd:cd01364    83 NCTIFAYGQTGTGKTYTMEGDrspneeytwelDPLAGIIPRTLHQLFEKLeDNGTEYSVKVSYLEIYNEELFDLLSPssD 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 528 PPERLVVRQGPAGQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAasppRAQGI--- 604
Cdd:cd01364   163 VSERLRMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSITIHI----KETTIdge 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 605 ----TGTLHLVDLAGSERVWKAGvaspvqrdpNGARRLREAQAINRSLLALGGVMAALRARRPHVPFRDSQLTRLLQPAL 680
Cdd:cd01364   239 elvkIGKLNLVDLAGSENIGRSG---------AVDKRAREAGNINQSLLTLGRVITALVERAPHVPYRESKLTRLLQDSL 309
                         330       340       350
                  ....*....|....*....|....*....|.
gi 1306253033 681 CAGTTAVLLLQISTRAEDLGETICSLKFAER 711
Cdd:cd01364   310 GGRTKTSIIATISPASVNLEETLSTLEYAHR 340
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
392-715 4.59e-69

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 230.29  E-value: 4.59e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 392 NIRVLCRLRP----AEGQPS-SLVSVEPGQggTITTCYRGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYSVCI 465
Cdd:cd01369     3 NIKVVCRFRPlnelEVLQGSkSIVKFDPED--TVVIATSETGKTFSFDRVFDPNTTQEDVYNFAaKPIVDDVLNGYNGTI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 466 FTYGQTGTGKTYSMEGPPEDP---GIAPRALQLLF---REMGTGGHHHVTLSMVEIYNEAVRDLLAtgpPER--LVVRQg 537
Cdd:cd01369    81 FAYGQTSSGKTYTMEGKLGDPesmGIIPRIVQDIFetiYSMDENLEFHVKVSYFEIYMEKIRDLLD---VSKtnLSVHE- 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 538 pAGQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQGITGTLHLVDLAGSE 617
Cdd:cd01369   157 -DKNRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQENVETEKKKSGKLYLVDLAGSE 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 618 RVWKAGVASPVqrdpngarrLREAQAINRSLLALGGVMAAL-RARRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRA 696
Cdd:cd01369   236 KVSKTGAEGAV---------LDEAKKINKSLSALGNVINALtDGKKTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSS 306
                         330
                  ....*....|....*....
gi 1306253033 697 EDLGETICSLKFAERVGQV 715
Cdd:cd01369   307 YNESETLSTLRFGQRAKTI 325
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
425-711 2.71e-67

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 226.46  E-value: 2.71e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 425 RGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYSVCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGTG 503
Cdd:cd01370    57 RNKELKYVFDRVFDETSTQEEVYEETtKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTPQEPGLMVLTMKELFKRIESL 136
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 504 GH---HHVTLSMVEIYNEAVRDLLaTGPPERLVVRQGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQ 580
Cdd:cd01370   137 KDekeFEVSMSYLEIYNETIRDLL-NPSSGPLELREDA--QNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANA 213
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 581 HSSRSHALVTLTLRAAspPRAQGIT-----GTLHLVDLAGSERvwkagvASPVQrdpNGARRLREAQAINRSLLALGGVM 655
Cdd:cd01370   214 TSSRSHAVLQITVRQQ--DKTASINqqvrqGKLSLIDLAGSER------ASATN---NRGQRLKEGANINRSLLALGNCI 282
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1306253033 656 AAL--RARRP-HVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAEDLGETICSLKFAER 711
Cdd:cd01370   283 NALadPGKKNkHIPYRDSKLTRLLKDSLGGNCRTVMIANISPSSSSYEETHNTLKYANR 341
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
392-711 4.90e-67

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 224.90  E-value: 4.90e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 392 NIRVLCRLRPAEGQ-------------PSSLVSVEPGQGgtittcyrgrqhRFRLDWVFPQDASQEEVFRQL-EPAVLSC 457
Cdd:cd01374     1 KITVTVRVRPLNSReigineqvaweidNDTIYLVEPPST------------SFTFDHVFGGDSTNREVYELIaKPVVKSA 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 458 LQGYSVCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFR--EMGTGGHHHVTLSMVEIYNEAVRDLLAtGPPERLVVR 535
Cdd:cd01374    69 LEGYNGTIFAYGQTSSGKTFTMSGDEDEPGIIPLAIRDIFSkiQDTPDREFLLRVSYLEIYNEKINDLLS-PTSQNLKIR 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 536 QGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTL--RAASPPRAQGIT-GTLHLVD 612
Cdd:cd01374   148 DDV--EKGVYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIesSERGELEEGTVRvSTLNLID 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 613 LAGSERVWKAGVAspvqrdpnGARRlREAQAINRSLLALGGVMAAL--RARRPHVPFRDSQLTRLLQPALCAGTTAVLLL 690
Cdd:cd01374   226 LAGSERAAQTGAA--------GVRR-KEGSHINKSLLTLGTVISKLseGKVGGHIPYRDSKLTRILQPSLGGNSRTAIIC 296
                         330       340
                  ....*....|....*....|.
gi 1306253033 691 QISTRAEDLGETICSLKFAER 711
Cdd:cd01374   297 TITPAESHVEETLNTLKFASR 317
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
391-715 4.37e-66

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 223.38  E-value: 4.37e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 391 GNIRVLCRLRP-------------AEGQPSSLVSVEPGQGGTITTCYRGRQHRFRLDWVF-------PQDASQEEVFRQL 450
Cdd:cd01365     1 ANVKVAVRVRPfnsrekernskciVQMSGKETTLKNPKQADKNNKATREVPKSFSFDYSYwshdsedPNYASQEQVYEDL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 451 EPAVLS-CLQGYSVCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREMG----TGGHHHVTLSMVEIYNEAVRDLLA 525
Cdd:cd01365    81 GEELLQhAFEGYNVCLFAYGQTGSGKSYTMMGTQEQPGIIPRLCEDLFSRIAdttnQNMSYSVEVSYMEIYNEKVRDLLN 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 526 ---TGPPERLVVRQGPAgqGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQ 602
Cdd:cd01365   161 pkpKKNKGNLKVREHPV--LGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTQKRHDAET 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 603 GITGT----LHLVDLAGSERVWKAGVaspvqrdpNGArRLREAQAINRSLLALGGVMAAL--------RARRPHVPFRDS 670
Cdd:cd01365   239 NLTTEkvskISLVDLAGSERASSTGA--------TGD-RLKEGANINKSLTTLGKVISALadmssgksKKKSSFIPYRDS 309
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1306253033 671 QLTRLLQPALCAGTTAVLLLQISTRAEDLGETICSLKFAERVGQV 715
Cdd:cd01365   310 VLTWLLKENLGGNSKTAMIAAISPADINYEETLSTLRYADRAKKI 354
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
392-712 1.63e-61

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 210.83  E-value: 1.63e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 392 NIRVLCRLRPAEGqpsslVSVEPGQG-------GTITTCYRGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYSV 463
Cdd:cd01373     2 AVKVFVRIRPPAE-----REGDGEYGqclkklsSDTLVLHSKPPKTFTFDHVADSNTNQESVFQSVgKPIVESCLSGYNG 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 464 CIFTYGQTGTGKTYSMEGPPE--------DPGIAPRALQLLFREM-------GTGGHHHVTLSMVEIYNEAVRDLLatGP 528
Cdd:cd01373    77 TIFAYGQTGSGKTYTMWGPSEsdnesphgLRGVIPRIFEYLFSLIqrekekaGEGKSFLCKCSFLEIYNEQIYDLL--DP 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 529 PER-LVVRQGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRaaSPPRAQGITGT 607
Cdd:cd01373   155 ASRnLKLREDI--KKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIE--SWEKKACFVNI 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 608 ----LHLVDLAGSERvwkagvaspVQRDPNGARRLREAQAINRSLLALGGVMAAL----RARRPHVPFRDSQLTRLLQPA 679
Cdd:cd01373   231 rtsrLNLVDLAGSER---------QKDTHAEGVRLKEAGNINKSLSCLGHVINALvdvaHGKQRHVCYRDSKLTFLLRDS 301
                         330       340       350
                  ....*....|....*....|....*....|...
gi 1306253033 680 LCAGTTAVLLLQISTRAEDLGETICSLKFAERV 712
Cdd:cd01373   302 LGGNAKTAIIANVHPSSKCFGETLSTLRFAQRA 334
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
393-712 2.82e-60

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 207.05  E-value: 2.82e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 393 IRVLCRLRPAEGQPSSLVSVEP-GQGGTI---TTCYRG------RQHRFRLDWVFpQDASQEEVFRQL-EPAVLSCLQGY 461
Cdd:cd01375     2 VQAFVRVRPTDDFAHEMIKYGEdGKSISIhlkKDLRRGvvnnqqEDWSFKFDGVL-HNASQELVYETVaKDVVSSALAGY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 462 SVCIFTYGQTGTGKTYSMEGPPE---DPGIAPRALQLLFREMGTGGHHHVT--LSMVEIYNEAVRDLLATGP------PE 530
Cdd:cd01375    81 NGTIFAYGQTGAGKTFTMTGGTEnykHRGIIPRALQQVFRMIEERPTKAYTvhVSYLEIYNEQLYDLLSTLPyvgpsvTP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 531 RLVVRQGPAgqgGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVT--LTLRAASPPRAQGITGTL 608
Cdd:cd01375   161 MTILEDSPQ---NIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTihLEAHSRTLSSEKYITSKL 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 609 HLVDLAGSERVWKAGVaspvqrdpnGARRLREAQAINRSLLALGGVMAAL-RARRPHVPFRDSQLTRLLQPALCAGTTAV 687
Cdd:cd01375   238 NLVDLAGSERLSKTGV---------EGQVLKEATYINKSLSFLEQAIIALsDKDRTHVPFRQSKLTHVLRDSLGGNCNTV 308
                         330       340
                  ....*....|....*....|....*
gi 1306253033 688 LLLQISTRAEDLGETICSLKFAERV 712
Cdd:cd01375   309 MVANIYGEAAQLEETLSTLRFASRV 333
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
370-711 1.32e-59

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 211.91  E-value: 1.32e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 370 QLSEGNQAPPTGCSGRLLELKGNIRVLCRLRPaEGQPSSLVSVEPGQGGTITTCYRGRqhrFRLDWVFPQDASQEEVFRQ 449
Cdd:COG5059     1 QSSDNNSPLKSRLSSRNEKSVSDIKSTIRIIP-GELGERLINTSKKSHVSLEKSKEGT---YAFDKVFGPSATQEDVYEE 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 450 LEPAVL-SCLQGYSVCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREM---GTGGHHHVTLSMVEIYNEAVRDLLA 525
Cdd:COG5059    77 TIKPLIdSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLedlSMTKDFAVSISYLEIYNEKIYDLLS 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 526 TGPPERLVVRQgpaGQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLraASPPRAQGI- 604
Cdd:COG5059   157 PNEESLNIRED---SLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIEL--ASKNKVSGTs 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 605 -TGTLHLVDLAGSERVWKAGvaspvqrdpNGARRLREAQAINRSLLALGGVMAALRARRP--HVPFRDSQLTRLLQPALC 681
Cdd:COG5059   232 eTSKLSLVDLAGSERAARTG---------NRGTRLKEGASINKSLLTLGNVINALGDKKKsgHIPYRESKLTRLLQDSLG 302
                         330       340       350
                  ....*....|....*....|....*....|
gi 1306253033 682 AGTTAVLLLQISTRAEDLGETICSLKFAER 711
Cdd:COG5059   303 GNCNTRVICTISPSSNSFEETINTLKFASR 332
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
393-710 1.35e-59

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 205.32  E-value: 1.35e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 393 IRVLCRLRP-------AEGQP------SSLVSVEPGQGGTITTCYRG---RQHRFRLDWVFPQDASQEEVFRQL-EPAVL 455
Cdd:cd01368     3 VKVYLRVRPlskdeleSEDEGcievinSTTVVLHPPKGSAANKSERNggqKETKFSFSKVFGPNTTQKEFFQGTaLPLVQ 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 456 SCLQGYSVCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGTgghHHVTLSMVEIYNEAVRDLL------ATGPP 529
Cdd:cd01368    83 DLLHGKNGLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG---YSVFVSYIEIYNEYIYDLLepspssPTKKR 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 530 ERLVVRQGpaGQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLrAASPPRAQGI----- 604
Cdd:cd01368   160 QSLRLRED--HNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIKL-VQAPGDSDGDvdqdk 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 605 ----TGTLHLVDLAGSERvwkagvaspVQRDPNGARRLREAQAINRSLLALGGVMAALR-----ARRPHVPFRDSQLTRL 675
Cdd:cd01368   237 dqitVSQLSLVDLAGSER---------TSRTQNTGERLKEAGNINTSLMTLGTCIEVLRenqlqGTNKMVPFRDSKLTHL 307
                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1306253033 676 LQPALCAGTTAVLLLQISTRAEDLGETICSLKFAE 710
Cdd:cd01368   308 FQNYFDGEGKASMIVNVNPCASDYDETLHVMKFSA 342
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
392-711 1.70e-57

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 198.88  E-value: 1.70e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 392 NIRVLCRLRP-----AEGQPSSLVSVEPGQGGTITT-CYRGRQHRFRLDWVFPQDASQEEVF-RQLEPAVLSCLQGYSVC 464
Cdd:cd01376     1 NVRVAVRVRPfvdgtAGASDPSCVSGIDSCSVELADpRNHGETLKYQFDAFYGEESTQEDIYaREVQPIVPHLLEGQNAT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 465 IFTYGQTGTGKTYSMEGPPEDPGIAPRAL-QLLFREMGTGGHHHVTLSMVEIYNEAVRDLLaTGPPERLVVRQGPAGQgg 543
Cdd:cd01376    81 VFAYGSTGAGKTFTMLGSPEQPGLMPLTVmDLLQMTRKEAWALSFTMSYLEIYQEKILDLL-EPASKELVIREDKDGN-- 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 544 IQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHA--LVTLTLRAASPPRAQgITGTLHLVDLAGSERVWK 621
Cdd:cd01376   158 ILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAvlLIKVDQRERLAPFRQ-RTGKLNLIDLAGSEDNRR 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 622 AGvaspvqrdpNGARRLREAQAINRSLLALGGVMAALRARRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAEDLGE 701
Cdd:cd01376   237 TG---------NEGIRLKESGAINSSLFVLSKVVNALNKNLPRIPYRDSKLTRLLQDSLGGGSRCIMVANIAPERTFYQD 307
                         330
                  ....*....|
gi 1306253033 702 TICSLKFAER 711
Cdd:cd01376   308 TLSTLNFAAR 317
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
392-713 3.03e-51

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 182.11  E-value: 3.03e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 392 NIRVLCRLRPA---EGQPSSLVSVEPGQGGTIT----------TCYrGRQHRFRLDWVFPQDASQEEVFRQ-LEPAVLSC 457
Cdd:cd01367     1 KIKVCVRKRPLnkkEVAKKEIDVVSVPSKLTLIvhepklkvdlTKY-IENHTFRFDYVFDESSSNETVYRStVKPLVPHI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 458 LQGYSVCIFTYGQTGTGKTYSMEG----PPEDPGIAPRALQLLFREMGTGGHH---HVTLSMVEIYNEAVRDLLATGPpe 530
Cdd:cd01367    80 FEGGKATCFAYGQTGSGKTYTMGGdfsgQEESKGIYALAARDVFRLLNKLPYKdnlGVTVSFFEIYGGKVFDLLNRKK-- 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 531 RLVVRQGPAGQggIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRaaspPRAQGIT-GTLH 609
Cdd:cd01367   158 RVRLREDGKGE--VQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILR----DRGTNKLhGKLS 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 610 LVDLAGSERvwkagvasPVQRDPNGARRLREAQAINRSLLALGGVMAALRARRPHVPFRDSQLTRLLQPALCAGTT-AVL 688
Cdd:cd01367   232 FVDLAGSER--------GADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSkTCM 303
                         330       340
                  ....*....|....*....|....*
gi 1306253033 689 LLQISTRAEDLGETICSLKFAERVG 713
Cdd:cd01367   304 IATISPGASSCEHTLNTLRYADRVK 328
PLN03188 PLN03188
kinesin-12 family protein; Provisional
393-711 7.38e-42

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 165.11  E-value: 7.38e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033  393 IRVLCRLRPAEGQPSSLVSVEPGQGGTITTcyrgRQHRFRLDWVFPQDASQEEVFrQL--EPAVLSCLQGYSVCIFTYGQ 470
Cdd:PLN03188   100 VKVIVRMKPLNKGEEGEMIVQKMSNDSLTI----NGQTFTFDSIADPESTQEDIF-QLvgAPLVENCLAGFNSSVFAYGQ 174
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033  471 TGTGKTYSMEGPP----------EDPGIAPRALQLLFREMGTGGHHHVT--------LSMVEIYNEAVRDLLatGPPER- 531
Cdd:PLN03188   175 TGSGKTYTMWGPAnglleehlsgDQQGLTPRVFERLFARINEEQIKHADrqlkyqcrCSFLEIYNEQITDLL--DPSQKn 252
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033  532 LVVRQGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQGI----TGT 607
Cdd:PLN03188   253 LQIREDV--KSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLssfkTSR 330
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033  608 LHLVDLAGSERVWKAGVAspvqrdpngARRLREAQAINRSLLALGGVMAAL-----RARRPHVPFRDSQLTRLLQPALCA 682
Cdd:PLN03188   331 INLVDLAGSERQKLTGAA---------GDRLKEAGNINRSLSQLGNLINILaeisqTGKQRHIPYRDSRLTFLLQESLGG 401
                          330       340
                   ....*....|....*....|....*....
gi 1306253033  683 GTTAVLLLQISTRAEDLGETICSLKFAER 711
Cdd:PLN03188   402 NAKLAMVCAISPSQSCKSETFSTLRFAQR 430
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
388-524 1.30e-29

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 114.62  E-value: 1.30e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 388 ELKGNIRVLCRLRPAEGqpsSLVSVEPGQGGTITTCYRGRQHRFRLDWVFPQDASQEEVFRQLEPAVLSCLQGYSVCIFT 467
Cdd:pfam16796  17 ELKGNIRVFARVRPELL---SEAQIDYPDETSSDGKIGSKNKSFSFDRVFPPESEQEDVFQEISQLVQSCLDGYNVCIFA 93
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 468 YGQTGTGktysmegppEDPGIAPRALQLLFREM---GTGGHHHVTLSMVEIYNEAVRDLL 524
Cdd:pfam16796  94 YGQTGSG---------SNDGMIPRAREQIFRFIsslKKGWKYTIELQFVEIYNESSQDLL 144
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
395-664 6.79e-21

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 90.48  E-value: 6.79e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 395 VLCRLRPAEGQPSSLVSVepgqggtITTCYRGRQhrfrldwvfpQDASQEEVFRQLEPAVLSCLQGYSV-CIFTYGQTGT 473
Cdd:cd01363     1 VLVRVNPFKELPIYRDSK-------IIVFYRGFR----------RSESQPHVFAIADPAYQSMLDGYNNqSIFAYGESGA 63
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 474 GKTYSMEgppedpGIAPRALQLLF---REMGTGGHHHVTLSMVEIYNEavrdllatgpperlvvrqgpagqggiqvaglt 550
Cdd:cd01363    64 GKTETMK------GVIPYLASVAFngiNKGETEGWVYLTEITVTLEDQ-------------------------------- 105
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306253033 551 hwdvpnletLHQMLSLGRSNRaTAATVMNQHSSRSHALVTLtlraasppraqgitgtlhLVDLAGSERvwkagvaspvqr 630
Cdd:cd01363   106 ---------ILQANPILEAFG-NAKTTRNENSSRFGKFIEI------------------LLDIAGFEI------------ 145
                         250       260       270
                  ....*....|....*....|....*....|....
gi 1306253033 631 dpngarrlreaqaINRSLLALGGVmaaLRARRPH 664
Cdd:cd01363   146 -------------INESLNTLMNV---LRATRPH 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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