|
Name |
Accession |
Description |
Interval |
E-value |
| DUF4549 |
pfam15082 |
Domain of unknown function (DUF4549); This family of proteins is found in eukaryotes. Proteins ... |
4-145 |
1.94e-63 |
|
Domain of unknown function (DUF4549); This family of proteins is found in eukaryotes. Proteins in this family are typically between 143 and 1871 amino acids in length. The human member of this family is C6orf183.
Pssm-ID: 464491 Cd Length: 142 Bit Score: 212.73 E-value: 1.94e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 4 VYKFSSTERIVLLEKELAVKLSELKTEVEDQGLFPGTGNRIFSSVQIPKDVAHFRREREAALKRTLQVAESKPLVIQADV 83
Cdd:pfam15082 1 AYKVSSTERVQELEKELSKQLEELKTEIEEADLLQGTKSKPYSSVGIPKDASYFRLERELVLNKALQVSQAKPVVVQADI 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1284806176 84 LKRELESCLRREYTPENLPLLLLQYYTERITQLGQSKYLHVLRWKRLCQTSMAMEELYPLYK 145
Cdd:pfam15082 81 MQRELESCLQREYTPEGLPLLLHQFYTDRIYQLAQCKYLHMLRWRRFCRHSQIIEQLYPLYK 142
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1800-2088 |
5.07e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 5.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1800 LRAQLTDLEEEnlnlkiqirKEVQEEYRELVQALFLtcLRIKEKLdeNQFNLIQKVCELIGEVRAEGIANVKQLKKtwgs 1879
Cdd:COG1196 198 LERQLEPLERQ---------AEKAERYRELKEELKE--LEAELLL--LKLRELEAELEELEAELEELEAELEELEA---- 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1880 ARPDEETKENTAKEQLCALEQDHSSTLAALLCKARSLGRwrLAVQQAHLRGQLSRAEMESILSKKECLRIklmaEQEAAL 1959
Cdd:COG1196 261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELAR--LEQDIARLEERRRELEERLEELEEELAEL----EEELEE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1960 LHQQLLAARQALTKAQTDNRKLWRQNDTQAQLLRELEHRV-----TQDSVTRQQLDIIKT-SGMEKLLKDVEQKEQKLQL 2033
Cdd:COG1196 335 LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELaeaeeELEELAEELLEALRAaAELAAQLEELEEAEEALLE 414
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1284806176 2034 LTEEAERASKRGQLQQKKMDRDLKQMRNRLAQERSVKLDAFQRVQELQSQLYDIQ 2088
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1755-2081 |
4.28e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 4.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1755 LQHTRQKLSQKEQEVDLLRRSqvpSEDCAGQVAELSHDMIM---EITALRAQLTDLEEENLNLKIQIrkEVQEEYRELVQ 1831
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKE---LEELSRQISALRKDLARleaEVEQLEERIAQLSKELTELEAEI--EELEERLEEAE 774
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1832 ALFLTCLRIKEKLD---ENQFNLIQKVCELIGEVRAEgianVKQLKKTWGSARPDEETKENTAKEQLCALEQDHSSTlaa 1908
Cdd:TIGR02168 775 EELAEAEAEIEELEaqiEQLKEELKALREALDELRAE----LTLLNEEAANLRERLESLERRIAATERRLEDLEEQI--- 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1909 llcKARSLGRWRLAVQQAHLrgQLSRAEMESILSKKEclriKLMAEQEaallhQQLLAARQALTKAQTDNRKLWRQNDTQ 1988
Cdd:TIGR02168 848 ---EELSEDIESLAAEIEEL--EELIEELESELEALL----NERASLE-----EALALLRSELEELSEELRELESKRSEL 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1989 AQLLRELEHRVTQdSVTRQQldiiktsgmeKLLKDVEQKEQKL----QLLTEEAERASKRGQLQQKKMDRDLKQMRNRLA 2064
Cdd:TIGR02168 914 RRELEELREKLAQ-LELRLE----------GLEVRIDNLQERLseeySLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
330
....*....|....*..
gi 1284806176 2065 QERSVKLDAFQRVQELQ 2081
Cdd:TIGR02168 983 ELGPVNLAAIEEYEELK 999
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1758-2088 |
5.96e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 48.63 E-value: 5.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1758 TRQKLS------QKEQEVDLLRRsQVPSEDCAGQVAElshdmiMEITALRAQLTD----LEEENLNLKI--QIRKEVQEE 1825
Cdd:pfam01576 481 TRQKLNlstrlrQLEDERNSLQE-QLEEEEEAKRNVE------RQLSTLQAQLSDmkkkLEEDAGTLEAleEGKKRLQRE 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1826 YRELVQALFLTCLRiKEKLDENQFNLIQKVCELIGEVRAEG--IANVKQLKKTWGSARPDEETKENTAKEQLCALEQDHS 1903
Cdd:pfam01576 554 LEALTQQLEEKAAA-YDKLEKTKNRLQQELDDLLVDLDHQRqlVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAR 632
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1904 STLAALLCKARSLGRWRLAVQQAHLRGQLSRAEMESILSKK--------ECLRIKLMAEQEAALLHQQLLAARQALTkaQ 1975
Cdd:pfam01576 633 EKETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKddvgknvhELERSKRALEQQVEEMKTQLEELEDELQ--A 710
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1976 TDNRKLWRQNDTQA---QLLRELEHRVTQDSVTRQQLdiiktsgmeklLKDVEQKEQKLqllteEAERaSKRGQL--QQK 2050
Cdd:pfam01576 711 TEDAKLRLEVNMQAlkaQFERDLQARDEQGEEKRRQL-----------VKQVRELEAEL-----EDER-KQRAQAvaAKK 773
|
330 340 350
....*....|....*....|....*....|....*...
gi 1284806176 2051 KMDRDLKQMRNRLAQERSVKLDAFQRVQELQSQLYDIQ 2088
Cdd:pfam01576 774 KLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQ 811
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1590-2085 |
3.87e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 3.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1590 SELYEAEILYPSMKALArqmgkeDEFEELMLRSQSILPPKGAseIEIKTQQLQKLLESLEIHMiqEVLRKVNREMTLfLS 1669
Cdd:PRK03918 221 EELEKLEKEVKELEELK------EEIEELEKELESLEGSKRK--LEEKIRELEERIEELKKEI--EELEEKVKELKE-LK 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1670 EKSKEESTLPTDRWKHQVMKENFSVMRPQIVERF--VQRLMEDSQDDGPKITFRREHLEAcilslgcdvMARERSNFETY 1747
Cdd:PRK03918 290 EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEIngIEERIKELEEKEERLEELKKKLKE---------LEKRLEELEER 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1748 SMCYEHIlqhtRQKLSQKEQEVDllRRSQVPSEDCAGQVAELS------HDMIMEITALRAQLtDLEEENLNLKI----- 1816
Cdd:PRK03918 361 HELYEEA----KAKKEELERLKK--RLTGLTPEKLEKELEELEkakeeiEEEISKITARIGEL-KKEIKELKKAIeelkk 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1817 --------------QIRKEVQEEYRELVQALFLTCLRIKEKL---------------DENQFNLIQKVCELIGEVRAE-G 1866
Cdd:PRK03918 434 akgkcpvcgrelteEHRKELLEEYTAELKRIEKELKEIEEKErklrkelrelekvlkKESELIKLKELAEQLKELEEKlK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1867 IANVKQLKKTWgsaRPDEETKE--NTAKEQLCALEQDHS------STLAALLCKARSLGRwrlavQQAHLRGQLSRAEME 1938
Cdd:PRK03918 514 KYNLEELEKKA---EEYEKLKEklIKLKGEIKSLKKELEkleelkKKLAELEKKLDELEE-----ELAELLKELEELGFE 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1939 SILSKKECLR---------IKLMA--------EQEAALLHQQLLAARQALTKAQTDNRKLWRQNDTQAQLLRELEHRVTQ 2001
Cdd:PRK03918 586 SVEELEERLKelepfyneyLELKDaekelereEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELR 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 2002 DSVTRQQLDII-KTSGMEKLLKDVEQKEQKLQLLTEE-AERASKRGQLQQ-KKMDRDLKQMRNRLAQER-SVKLDAFQRV 2077
Cdd:PRK03918 666 EEYLELSRELAgLRAELEELEKRREEIKKTLEKLKEElEEREKAKKELEKlEKALERVEELREKVKKYKaLLKERALSKV 745
|
....*...
gi 1284806176 2078 QELQSQLY 2085
Cdd:PRK03918 746 GEIASEIF 753
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DUF4549 |
pfam15082 |
Domain of unknown function (DUF4549); This family of proteins is found in eukaryotes. Proteins ... |
4-145 |
1.94e-63 |
|
Domain of unknown function (DUF4549); This family of proteins is found in eukaryotes. Proteins in this family are typically between 143 and 1871 amino acids in length. The human member of this family is C6orf183.
Pssm-ID: 464491 Cd Length: 142 Bit Score: 212.73 E-value: 1.94e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 4 VYKFSSTERIVLLEKELAVKLSELKTEVEDQGLFPGTGNRIFSSVQIPKDVAHFRREREAALKRTLQVAESKPLVIQADV 83
Cdd:pfam15082 1 AYKVSSTERVQELEKELSKQLEELKTEIEEADLLQGTKSKPYSSVGIPKDASYFRLERELVLNKALQVSQAKPVVVQADI 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1284806176 84 LKRELESCLRREYTPENLPLLLLQYYTERITQLGQSKYLHVLRWKRLCQTSMAMEELYPLYK 145
Cdd:pfam15082 81 MQRELESCLQREYTPEGLPLLLHQFYTDRIYQLAQCKYLHMLRWRRFCRHSQIIEQLYPLYK 142
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1800-2088 |
5.07e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 5.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1800 LRAQLTDLEEEnlnlkiqirKEVQEEYRELVQALFLtcLRIKEKLdeNQFNLIQKVCELIGEVRAEGIANVKQLKKtwgs 1879
Cdd:COG1196 198 LERQLEPLERQ---------AEKAERYRELKEELKE--LEAELLL--LKLRELEAELEELEAELEELEAELEELEA---- 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1880 ARPDEETKENTAKEQLCALEQDHSSTLAALLCKARSLGRwrLAVQQAHLRGQLSRAEMESILSKKECLRIklmaEQEAAL 1959
Cdd:COG1196 261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELAR--LEQDIARLEERRRELEERLEELEEELAEL----EEELEE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1960 LHQQLLAARQALTKAQTDNRKLWRQNDTQAQLLRELEHRV-----TQDSVTRQQLDIIKT-SGMEKLLKDVEQKEQKLQL 2033
Cdd:COG1196 335 LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELaeaeeELEELAEELLEALRAaAELAAQLEELEEAEEALLE 414
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1284806176 2034 LTEEAERASKRGQLQQKKMDRDLKQMRNRLAQERSVKLDAFQRVQELQSQLYDIQ 2088
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1755-2049 |
1.74e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 1.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1755 LQHTRQKLSQKEQEVDLLRRsqvpsedcagQVAELSHdmimEITALRAQLTDLEEENLNLKIQIrKEVQEEYRELVQALf 1834
Cdd:COG1196 234 LRELEAELEELEAELEELEA----------ELEELEA----ELAELEAELEELRLELEELELEL-EEAQAEEYELLAEL- 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1835 ltcLRIKEKLDENQfNLIQKVCELIGEVRAEgIANVKQLKKTWGSARPDEETKENTAKEQLCALEQDHSSTLAALLCKAR 1914
Cdd:COG1196 298 ---ARLEQDIARLE-ERRRELEERLEELEEE-LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1915 SLGRWRLAVQQAhlRGQLSRAEMESILSKKECLRIKLMAEQEAALLHQQLLAARQALTKAQTDNRKLWRQNDTQAQLLRE 1994
Cdd:COG1196 373 ELAEAEEELEEL--AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1284806176 1995 LEHRVTQDSVTRQQLdiiktsgmEKLLKDVEQKEQKLQLLTEEAERASKRGQLQQ 2049
Cdd:COG1196 451 EAELEEEEEALLELL--------AELLEEAALLEAALAELLEELAEAAARLLLLL 497
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1755-2081 |
4.28e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 4.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1755 LQHTRQKLSQKEQEVDLLRRSqvpSEDCAGQVAELSHDMIM---EITALRAQLTDLEEENLNLKIQIrkEVQEEYRELVQ 1831
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKE---LEELSRQISALRKDLARleaEVEQLEERIAQLSKELTELEAEI--EELEERLEEAE 774
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1832 ALFLTCLRIKEKLD---ENQFNLIQKVCELIGEVRAEgianVKQLKKTWGSARPDEETKENTAKEQLCALEQDHSSTlaa 1908
Cdd:TIGR02168 775 EELAEAEAEIEELEaqiEQLKEELKALREALDELRAE----LTLLNEEAANLRERLESLERRIAATERRLEDLEEQI--- 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1909 llcKARSLGRWRLAVQQAHLrgQLSRAEMESILSKKEclriKLMAEQEaallhQQLLAARQALTKAQTDNRKLWRQNDTQ 1988
Cdd:TIGR02168 848 ---EELSEDIESLAAEIEEL--EELIEELESELEALL----NERASLE-----EALALLRSELEELSEELRELESKRSEL 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1989 AQLLRELEHRVTQdSVTRQQldiiktsgmeKLLKDVEQKEQKL----QLLTEEAERASKRGQLQQKKMDRDLKQMRNRLA 2064
Cdd:TIGR02168 914 RRELEELREKLAQ-LELRLE----------GLEVRIDNLQERLseeySLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
330
....*....|....*..
gi 1284806176 2065 QERSVKLDAFQRVQELQ 2081
Cdd:TIGR02168 983 ELGPVNLAAIEEYEELK 999
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1755-2096 |
2.82e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 2.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1755 LQHTRQKLSQKEQEVDLLRRSQVpsEDCAGQVAELShdmiMEITALRAQLTDLEEENLNLKIQIR-----KEVQEEYREL 1829
Cdd:COG4717 172 LAELQEELEELLEQLSLATEEEL--QDLAEELEELQ----QRLAELEEELEEAQEELEELEEELEqleneLEAAALEERL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1830 VQALFLTCLR----IKEKLDENQFNLIQKVCELIG-EVRAEGIANVKQLKKTWGSARPDEETKENTAKEQLCALEQDhsS 1904
Cdd:COG4717 246 KEARLLLLIAaallALLGLGGSLLSLILTIAGVLFlVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELE--E 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1905 TLAAL-LCKARSLGRWRLAVQQ-AHLRGQLSRAEmesilskkeclriklmaEQEAALLHQQLLAARQAL-TKAQTDNRKL 1981
Cdd:COG4717 324 LLAALgLPPDLSPEELLELLDRiEELQELLREAE-----------------ELEEELQLEELEQEIAALlAEAGVEDEEE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1982 WRQNDTQAQLLRELEHRVTQdsVTRQQLDIIKTSGMEKLLKDVEQKEQKLQLLTEE-AERASKRGQLQQKKmdRDLKQMR 2060
Cdd:COG4717 387 LRAALEQAEEYQELKEELEE--LEEQLEELLGELEELLEALDEEELEEELEELEEElEELEEELEELREEL--AELEAEL 462
|
330 340 350
....*....|....*....|....*....|....*...
gi 1284806176 2061 NRLAQERSVkLDAFQRVQELQSQLYDI--QWPSVQMGS 2096
Cdd:COG4717 463 EQLEEDGEL-AELLQELEELKAELRELaeEWAALKLAL 499
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1924-2088 |
5.94e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.90 E-value: 5.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1924 QQAHLRGQLSR--AEMESILSKKECLRIKL-MAEQEAALLHQQLLAARQALTKAQTD----NRKLWRQNDT--------Q 1988
Cdd:COG3883 31 ELEAAQAELDAlqAELEELNEEYNELQAELeALQAEIDKLQAEIAEAEAEIEERREElgerARALYRSGGSvsyldvllG 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1989 AQLLRELEHRVTQ-DSVTRQQLDIIKTsgMEKLLKDVEQKEQKLQLLTEEAERASKRGQLQQKKMDRDLKQMRNRLAQER 2067
Cdd:COG3883 111 SESFSDFLDRLSAlSKIADADADLLEE--LKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLS 188
|
170 180
....*....|....*....|.
gi 1284806176 2068 SVKLDAFQRVQELQSQLYDIQ 2088
Cdd:COG3883 189 AEEAAAEAQLAELEAELAAAE 209
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1758-2088 |
5.96e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 48.63 E-value: 5.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1758 TRQKLS------QKEQEVDLLRRsQVPSEDCAGQVAElshdmiMEITALRAQLTD----LEEENLNLKI--QIRKEVQEE 1825
Cdd:pfam01576 481 TRQKLNlstrlrQLEDERNSLQE-QLEEEEEAKRNVE------RQLSTLQAQLSDmkkkLEEDAGTLEAleEGKKRLQRE 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1826 YRELVQALFLTCLRiKEKLDENQFNLIQKVCELIGEVRAEG--IANVKQLKKTWGSARPDEETKENTAKEQLCALEQDHS 1903
Cdd:pfam01576 554 LEALTQQLEEKAAA-YDKLEKTKNRLQQELDDLLVDLDHQRqlVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAR 632
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1904 STLAALLCKARSLGRWRLAVQQAHLRGQLSRAEMESILSKK--------ECLRIKLMAEQEAALLHQQLLAARQALTkaQ 1975
Cdd:pfam01576 633 EKETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKddvgknvhELERSKRALEQQVEEMKTQLEELEDELQ--A 710
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1976 TDNRKLWRQNDTQA---QLLRELEHRVTQDSVTRQQLdiiktsgmeklLKDVEQKEQKLqllteEAERaSKRGQL--QQK 2050
Cdd:pfam01576 711 TEDAKLRLEVNMQAlkaQFERDLQARDEQGEEKRRQL-----------VKQVRELEAEL-----EDER-KQRAQAvaAKK 773
|
330 340 350
....*....|....*....|....*....|....*...
gi 1284806176 2051 KMDRDLKQMRNRLAQERSVKLDAFQRVQELQSQLYDIQ 2088
Cdd:pfam01576 774 KLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQ 811
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1755-2079 |
8.92e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 8.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1755 LQHTRQKLSQKEQEVDLLrrsqvpsedcAGQVAELShdmiMEITALRAQLTDLEEEnlnlKIQIRKEVQEEYRELVQALf 1834
Cdd:TIGR02168 672 ILERRREIEELEEKIEEL----------EEKIAELE----KALAELRKELEELEEE----LEQLRKELEELSRQISALR- 732
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1835 lTCLRIKEKLDENQFNLIQKVCELIGEVRAEGIANVKQLKKTWGSARPDEETKEnTAKEQLCALEQDHSSTLAALLCKAR 1914
Cdd:TIGR02168 733 -KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE-ELEAQIEQLKEELKALREALDELRA 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1915 SLGRWRLAVQQAHLRGQLSRAEMESILSKKECL--RIKLMAEQEAALLHQqLLAARQALTKAQTDNRKLWRQNDTQAQLL 1992
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAATERRLEDLeeQIEELSEDIESLAAE-IEELEELIEELESELEALLNERASLEEAL 889
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1993 RELEHRVTQdsvtrqqldiiktsgMEKLLKDVEQKEQKLQLLTEEAERASKRGQLQQKKMDRDLKQMRNRLAQERSVKLD 2072
Cdd:TIGR02168 890 ALLRSELEE---------------LSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLE 954
|
....*..
gi 1284806176 2073 AFQRVQE 2079
Cdd:TIGR02168 955 EAEALEN 961
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1898-2088 |
3.58e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 3.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1898 LEQDHSSTLAALLCKARSLGRWRLAVQQAHLRgqlSRAEMESilskkeCLRIKLMAEQEAALLHQQLLAARQalTKAQTD 1977
Cdd:pfam17380 362 LERIRQEEIAMEISRMRELERLQMERQQKNER---VRQELEA------ARKVKILEEERQRKIQQQKVEMEQ--IRAEQE 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1978 NRKLWRQNDTQAQLLRELEhRVTQDSVTRQ-QLDIIKTsgmekllKDVEQKEQKLQLLTEEAERASKRgQLQQKKMDRDL 2056
Cdd:pfam17380 431 EARQREVRRLEEERAREME-RVRLEEQERQqQVERLRQ-------QEEERKRKKLELEKEKRDRKRAE-EQRRKILEKEL 501
|
170 180 190
....*....|....*....|....*....|..
gi 1284806176 2057 KQMRNRLAQERSVKLDAFQRVQELQSQLYDIQ 2088
Cdd:pfam17380 502 EERKQAMIEEERKRKLLEKEMEERQKAIYEEE 533
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1590-2085 |
3.87e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 3.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1590 SELYEAEILYPSMKALArqmgkeDEFEELMLRSQSILPPKGAseIEIKTQQLQKLLESLEIHMiqEVLRKVNREMTLfLS 1669
Cdd:PRK03918 221 EELEKLEKEVKELEELK------EEIEELEKELESLEGSKRK--LEEKIRELEERIEELKKEI--EELEEKVKELKE-LK 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1670 EKSKEESTLPTDRWKHQVMKENFSVMRPQIVERF--VQRLMEDSQDDGPKITFRREHLEAcilslgcdvMARERSNFETY 1747
Cdd:PRK03918 290 EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEIngIEERIKELEEKEERLEELKKKLKE---------LEKRLEELEER 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1748 SMCYEHIlqhtRQKLSQKEQEVDllRRSQVPSEDCAGQVAELS------HDMIMEITALRAQLtDLEEENLNLKI----- 1816
Cdd:PRK03918 361 HELYEEA----KAKKEELERLKK--RLTGLTPEKLEKELEELEkakeeiEEEISKITARIGEL-KKEIKELKKAIeelkk 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1817 --------------QIRKEVQEEYRELVQALFLTCLRIKEKL---------------DENQFNLIQKVCELIGEVRAE-G 1866
Cdd:PRK03918 434 akgkcpvcgrelteEHRKELLEEYTAELKRIEKELKEIEEKErklrkelrelekvlkKESELIKLKELAEQLKELEEKlK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1867 IANVKQLKKTWgsaRPDEETKE--NTAKEQLCALEQDHS------STLAALLCKARSLGRwrlavQQAHLRGQLSRAEME 1938
Cdd:PRK03918 514 KYNLEELEKKA---EEYEKLKEklIKLKGEIKSLKKELEkleelkKKLAELEKKLDELEE-----ELAELLKELEELGFE 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1939 SILSKKECLR---------IKLMA--------EQEAALLHQQLLAARQALTKAQTDNRKLWRQNDTQAQLLRELEHRVTQ 2001
Cdd:PRK03918 586 SVEELEERLKelepfyneyLELKDaekelereEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELR 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 2002 DSVTRQQLDII-KTSGMEKLLKDVEQKEQKLQLLTEE-AERASKRGQLQQ-KKMDRDLKQMRNRLAQER-SVKLDAFQRV 2077
Cdd:PRK03918 666 EEYLELSRELAgLRAELEELEKRREEIKKTLEKLKEElEEREKAKKELEKlEKALERVEELREKVKKYKaLLKERALSKV 745
|
....*...
gi 1284806176 2078 QELQSQLY 2085
Cdd:PRK03918 746 GEIASEIF 753
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1918-2094 |
3.90e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 45.27 E-value: 3.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1918 RWRLAVQQAHLRGQLSRAEMESILSKKEclRIKLMAEQ-EAALLHQQLLAARQALTKAQTDNRklwrqndtqaQLLRELE 1996
Cdd:pfam07888 68 REQWERQRRELESRVAELKEELRQSREK--HEELEEKYkELSASSEELSEEKDALLAQRAAHE----------ARIRELE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1997 hrvtQDSVTRQQLDIIKTSGMEKLlKDvEQKEQKLQLLTEEAERASKRGQLQQ-----KKMDRDLKQMRNRLAQERSVKL 2071
Cdd:pfam07888 136 ----EDIKTLTQRVLERETELERM-KE-RAKKAGAQRKEEEAERKQLQAKLQQteeelRSLSKEFQELRNSLAQRDTQVL 209
|
170 180
....*....|....*....|...
gi 1284806176 2072 DAFQRVQELQSQLYDIQWPSVQM 2094
Cdd:pfam07888 210 QLQDTITTLTQKLTTAHRKEAEN 232
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1740-2089 |
5.07e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 5.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1740 ERSNFETYSMCYEHILQHTRQKLSQKEQEVDLLRRSQVPSEDCAGQVAELSHDM--IM----EITALRAqlTDLEEENLN 1813
Cdd:TIGR00606 208 ELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLskIMkldnEIKALKS--RKKQMEKDN 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1814 LKI-QIRKEV---------------QEEYRELVQALfLTCLRIKEKLDENQFNLIQKVCELIGEVraeGIANVKQLKKTW 1877
Cdd:TIGR00606 286 SELeLKMEKVfqgtdeqlndlyhnhQRTVREKEREL-VDCQRELEKLNKERRLLNQEKTELLVEQ---GRLQLQADRHQE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1878 GSARPDEETKENTAKEQLCALEQDHSSTL----AALLCKARSLGRWRLAVQ-------------------QAHLRGQLSR 1934
Cdd:TIGR00606 362 HIRARDSLIQSLATRLELDGFERGPFSERqiknFHTLVIERQEDEAKTAAQlcadlqskerlkqeqadeiRDEKKGLGRT 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1935 AEMES-ILSKK-ECLRIKLMAEQEAALLHQQLLAARQALTKAQTDNRKLWRQNDTQAQLLRELehrvtqdSVTRQQLDII 2012
Cdd:TIGR00606 442 IELKKeILEKKqEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVK-------SLQNEKADLD 514
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1284806176 2013 KtsgmeKLLKDVEQKEQKlqllTEEAERASKRGQLQQKKMDRDLKQMRNRlaqersvkldaFQRVQELQSQLYDIQW 2089
Cdd:TIGR00606 515 R-----KLRKLDQEMEQL----NHHTTTRTQMEMLTKDKMDKDEQIRKIK-----------SRHSDELTSLLGYFPN 571
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1931-2088 |
7.81e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.78 E-value: 7.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1931 QLSRAEMESILSKKEcLRIKLMAEQ------EAALLHQQLLAARQALTKAQTDNRKLWRQNDTQAQLLRELEHRVTQDSV 2004
Cdd:pfam01576 123 QLEKVTTEAKIKKLE-EDILLLEDQnsklskERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEK 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 2005 TRQQLDIIKTSgMEKLLKDVEQKEQKLQLLTEEAeraskRGQLQQKkmDRDLKQMRNRLAQERSVKLDAFQRVQELQSQL 2084
Cdd:pfam01576 202 GRQELEKAKRK-LEGESTDLQEQIAELQAQIAEL-----RAQLAKK--EEELQAALARLEEETAQKNNALKKIRELEAQI 273
|
....
gi 1284806176 2085 YDIQ 2088
Cdd:pfam01576 274 SELQ 277
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1953-2088 |
1.82e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1953 AEQEAALLHQQLLAARQALTKAQTDNRKLWRQNDTQAQLLRELEHRVTQDSVtrQQLDIIKT--SGMEKLLKDVEQKEQK 2030
Cdd:COG4913 286 AQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGG--DRLEQLEReiERLERELEERERRRAR 363
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1284806176 2031 LQLL---------TEEAERASKRGQLQQKKmdRDLKQMRNRLAQERSvklDAFQRVQELQSQLYDIQ 2088
Cdd:COG4913 364 LEALlaalglplpASAEEFAALRAEAAALL--EALEEELEALEEALA---EAEAALRDLRRELRELE 425
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1590-2084 |
2.90e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1590 SELYEAEILYPS-MKALARQMGKEDEFEELMLrsqsILPPKGASEIEIKTQQLQKLlesleihmiQEVLRKVNREMTLFL 1668
Cdd:TIGR00606 698 SDLQSKLRLAPDkLKSTESELKKKEKRRDEML----GLAPGRQSIIDLKEKEIPEL---------RNKLQKVNRDIQRLK 764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1669 SEKSKEESTLPTdrwkhqVMKENFSVMRPQIVERFVQRLMEDSQDDGPKITFRREHLEACILSLGCDVMARERsnfetys 1748
Cdd:TIGR00606 765 NDIEEQETLLGT------IMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEK------- 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1749 mcyehilQHTRQKLSQKEQEVDLLRRsqvpsedcagqvaeLSHDMIMEITALRAQLTDLEEENLNLKiqirkevqeeyre 1828
Cdd:TIGR00606 832 -------QEKQHELDTVVSKIELNRK--------------LIQDQQEQIQHLKSKTNELKSEKLQIG------------- 877
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1829 lvqalflTCLRIKEKLDENQFNLIQKVCELIGEvraegianVKQLKKtwgSARPDEETKENTAKEQLCALEQDHSSTLAA 1908
Cdd:TIGR00606 878 -------TNLQRRQQFEEQLVELSTEVQSLIRE--------IKDAKE---QDSPLETFLEKDQQEKEELISSKETSNKKA 939
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1909 LLckarSLGRWRLAVQQAHlrgqlsrAEMESILSKKE--CLRIKLMAEQEAALLHQQLLAARQALTKAQTDNRKLWRQND 1986
Cdd:TIGR00606 940 QD----KVNDIKEKVKNIH-------GYMKDIENKIQdgKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDID 1008
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1987 TQAQllrelEHRVTQDSVTRQQLdiiktsgmEKLLKDVEQkeqklqlltEEAERASKRGQLQQKKMDRDLKQMRNRLAQE 2066
Cdd:TIGR00606 1009 TQKI-----QERWLQDNLTLRKR--------ENELKEVEE---------ELKQHLKEMGQMQVLQMKQEHQKLEENIDLI 1066
|
490
....*....|....*...
gi 1284806176 2067 RSVKLDAFQRVQELQSQL 2084
Cdd:TIGR00606 1067 KRNHVLALGRQKGYEKEI 1084
|
|
| HlpA |
COG2825 |
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope ... |
2017-2086 |
3.48e-03 |
|
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442073 [Multi-domain] Cd Length: 171 Bit Score: 40.59 E-value: 3.48e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1284806176 2017 MEKLLKDVEQKEQKLQ----LLTEEaERASKRGQLQQKkmDRDLKQMRNRLAQersvklDAFQRVQELQSQLYD 2086
Cdd:COG2825 59 LQKLEKELQALQEKLQkeaaTLSEE-ERQKKERELQKK--QQELQRKQQEAQQ------DLQKRQQELLQPILE 123
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1796-2081 |
4.88e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.81 E-value: 4.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1796 EITALRAQLTDLEEEnlnlKIQIRKEVQEEYRELvqalfltcLRIKEKLDENQFNLiQKVCELIGEVRAEgIANVKQLKK 1875
Cdd:COG4372 46 ELEQLREELEQAREE----LEQLEEELEQARSEL--------EQLEEELEELNEQL-QAAQAELAQAQEE-LESLQEEAE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1876 TWGSARPDEETKENTAKEQLCALEQDHSSTLAALLCKARSLGrwRLAVQQAHLRGQLSRAEMESILSKKECLRIKlmaeq 1955
Cdd:COG4372 112 ELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELK--ELEEQLESLQEELAALEQELQALSEAEAEQA----- 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1956 eaalLHQQLLAARQALTKAQTDNRKLWRQNDTQAQLLRELEHRVTQDSVTRQQLDIIKTSGMEKLLKDVEQKEQKLQLLT 2035
Cdd:COG4372 185 ----LDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEI 260
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1284806176 2036 EEAERASKRGQLQQKKMDRDLKQMRNRLAQERSVKLDAFQRVQELQ 2081
Cdd:COG4372 261 EELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAA 306
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1798-2091 |
9.53e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.48 E-value: 9.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1798 TALRAQ------LTDLEEENLNLKIQ--IRKEVQEEYRELVQALFLTCLRIKE----------KLDENQFNLIQKVCELI 1859
Cdd:COG3096 341 TALRQQekieryQEDLEELTERLEEQeeVVEEAAEQLAEAEARLEAAEEEVDSlksqladyqqALDVQQTRAIQYQQAVQ 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1860 GEVRAEGIANVKQLkkTWGSARPDEET---KENTAKEQLCALEQDHSSTLAA---------LLCK-------------AR 1914
Cdd:COG3096 421 ALEKARALCGLPDL--TPENAEDYLAAfraKEQQATEEVLELEQKLSVADAArrqfekayeLVCKiageversqawqtAR 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1915 S-LGRWR----LAVQQAHLRGQLSRAEmesilskkeclriKLMAEQEAA--LLHQQLLAARQALTKAQTDNRKLWRQNDT 1987
Cdd:COG3096 499 ElLRRYRsqqaLAQRLQQLRAQLAELE-------------QRLRQQQNAerLLEEFCQRIGQQLDAAEELEELLAELEAQ 565
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1284806176 1988 QAQLLRELEHRVTQDSVTRQQLDIIKTsgmekLLKDVEQKE-------QKLQLLTEE-AERASKRGQLQQkkmdrdlkQM 2059
Cdd:COG3096 566 LEELEEQAAEAVEQRSELRQQLEQLRA-----RIKELAARApawlaaqDALERLREQsGEALADSQEVTA--------AM 632
|
330 340 350
....*....|....*....|....*....|....*
gi 1284806176 2060 RNRLAQERSVKL---DAFQRVQELQSQLYDIQWPS 2091
Cdd:COG3096 633 QQLLEREREATVerdELAARKQALESQIERLSQPG 667
|
|
| |
