|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
175-339 |
6.33e-32 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 124.73 E-value: 6.33e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 175 IQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYK 253
Cdd:COG0457 1 LELDPDdAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 254 SLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQF 333
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
....*.
gi 1270111361 334 YEGIKA 339
Cdd:COG0457 161 EEALEL 166
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
157-383 |
2.31e-31 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 123.19 E-value: 2.31e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 157 ILSPLGRINEAVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAI 235
Cdd:COG0457 17 AYRRLGRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEAL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 236 EAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPY 315
Cdd:COG0457 97 EDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALA 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1270111361 316 NEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLRVKYLREYSRYLHAHLDTPLTEYN 383
Cdd:COG0457 177 ALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
208-348 |
6.78e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 104.32 E-value: 6.78e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 208 LELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQ 287
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1270111361 288 LRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDP 348
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
181-314 |
3.00e-24 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 99.11 E-value: 3.00e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 181 ARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYR 260
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1270111361 261 ELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEP 314
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
155-374 |
5.74e-24 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 107.39 E-value: 5.74e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 155 LQILSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKE 233
Cdd:COG3914 85 ALLLQALGRYEEALALYRRALALNPdNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEE 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 234 AIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLE 313
Cdd:COG3914 165 AIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALA 244
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1270111361 314 PYNEVC-----QYMKGLS-------HVAMGQFYE-GIKAQTKVMLNDPLPGQKaspeyLRVKYLreySRYLHAH 374
Cdd:COG3914 245 RGPSELspfalLYLPDDDpaellalARAWAQLVAaAAAPELPPPPNPRDPDRK-----LRIGYV---SADFRRH 310
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
131-348 |
7.14e-24 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 102.11 E-value: 7.14e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 131 ELAIAYVLvgSGLYDEAIRHFSTMLQI----------LSPL----GRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISE 195
Cdd:COG2956 13 FKGLNYLL--NGQPDKAIDLLEEALELdpetveahlaLGNLyrrrGEYDRAIRIHQKLLERDPdRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 196 DYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKA 275
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1270111361 276 LLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDP 348
Cdd:COG2956 171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
122-318 |
1.33e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 98.26 E-value: 1.33e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 122 ATDNDSTNEE--LAIAYVLVGSGLYDEAIRHFSTML-------QILSPLGRINEAVNDLTKAIQL--------QPSARLY 184
Cdd:COG2956 34 ALELDPETVEahLALGNLYRRRGEYDRAIRIHQKLLerdpdraEALLELAQDYLKAGLLDRAEELleklleldPDDAEAL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 185 RHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGN 264
Cdd:COG2956 114 RLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGD 193
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1270111361 265 FDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEV 318
Cdd:COG2956 194 YEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
174-348 |
2.50e-22 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 102.38 E-value: 2.50e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 174 AIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYK 253
Cdd:COG3914 71 AAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 254 SLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEV--CQYMKGLSHVAMG 331
Cdd:COG3914 151 NLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADahSNLLFALRQACDW 230
|
170
....*....|....*..
gi 1270111361 332 QFYEGIKAQTKVMLNDP 348
Cdd:COG3914 231 EVYDRFEELLAALARGP 247
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
165-311 |
1.08e-20 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 91.52 E-value: 1.08e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 165 NEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQ 244
Cdd:COG4785 57 ALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALEL 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 245 KVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRG-------------------MMLY-HHGSLQEALK 304
Cdd:COG4785 137 DPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYlaerkldpekalallledwATAYlLQGDTEEARE 216
|
....*..
gi 1270111361 305 NFKRCLQ 311
Cdd:COG4785 217 LFKLALA 223
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
124-311 |
1.26e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 92.48 E-value: 1.26e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 124 DNDSTNEELAIAYVLvgSGLYDEAIRHFSTMLQI-------LSPLGRI-------NEAVNDLTKAIQLQP-SARLYRHRG 188
Cdd:COG2956 74 DRAEALLELAQDYLK--AGLLDRAEELLEKLLELdpddaeaLRLLAEIyeqegdwEKAIEVLERLLKLGPeNAHAYCELA 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 189 TLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAA 268
Cdd:COG2956 152 ELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEA 231
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1270111361 269 TESFQKALLLNQNHVQTLQLrGMMLYHHGSLQEALKNFKRCLQ 311
Cdd:COG2956 232 LELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQLR 273
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
156-282 |
2.65e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 87.55 E-value: 2.65e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 156 QILSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEA 234
Cdd:COG4783 12 QALLLAGDYDEAEALLEKALELDPdNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEA 91
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1270111361 235 IEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNH 282
Cdd:COG4783 92 LALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
187-365 |
3.27e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 91.33 E-value: 3.27e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 187 RGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFD 266
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 267 AATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMln 346
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL-- 171
|
170
....*....|....*....
gi 1270111361 347 dplpgqKASPEYLRVKYLR 365
Cdd:COG2956 172 ------KLDPDCARALLLL 184
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
200-314 |
3.69e-19 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 84.29 E-value: 3.69e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 200 AHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLN 279
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110
....*....|....*....|....*....|....*
gi 1270111361 280 QNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEP 314
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
166-292 |
1.49e-18 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 82.36 E-value: 1.49e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 166 EAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQ 244
Cdd:COG4235 1 EAIARLRQALAANPnDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1270111361 245 KVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMM 292
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
233-339 |
4.86e-18 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 80.82 E-value: 4.86e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 233 EAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQL 312
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|....*..
gi 1270111361 313 EPYNEVCQYMKGLSHVAMGQFYEGIKA 339
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAA 107
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
146-339 |
5.28e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 88.51 E-value: 5.28e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 146 EAIRHFSTMLQILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTF 225
Cdd:COG3914 9 LAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 226 FHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKN 305
Cdd:COG3914 89 QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAA 168
|
170 180 190
....*....|....*....|....*....|....
gi 1270111361 306 FKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKA 339
Cdd:COG3914 169 LRRALELDPDNAEALNNLGNALQDLGRLEEAIAA 202
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
219-348 |
1.01e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 84.01 E-value: 1.01e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 219 LYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGS 298
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1270111361 299 LQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDP 348
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGP 141
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
217-348 |
1.04e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 80.24 E-value: 1.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 217 AMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHH 296
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1270111361 297 GSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDP 348
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
104-350 |
3.88e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 79.74 E-value: 3.88e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 104 EKILSQAKSIAEQkrfpfatdndSTNEELAIAYVLVGSGLYDEAIRHFSTMLQI--------------LSPLGRINEAVN 169
Cdd:TIGR02917 145 QKSYEQALAIDPR----------SLYAKLGLAQLALAENRFDEARALIDEVLTAdpgnvdalllkgdlLLSLGNIELALA 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 170 DLTKAIQLQP-----------------------------SARLYRHRGTLY------FISEDYATAHEDFQQSLELNRNQ 214
Cdd:TIGR02917 215 AYRKAIALRPnniavllalatilieagefeeaekhadalLKKAPNSPLAHYlkalvdFQKKNYEDARETLQDALKSAPEY 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 215 PTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLY 294
Cdd:TIGR02917 295 LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYL 374
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1270111361 295 HHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKA-QTKVMLNDPLP 350
Cdd:TIGR02917 375 ALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADlETAAQLDPELG 431
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
225-314 |
4.56e-15 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 71.35 E-value: 4.56e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 225 FFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAAtESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALK 304
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 1270111361 305 NFKRCLQLEP 314
Cdd:COG3063 81 YLERALELDP 90
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
222-314 |
5.30e-15 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 74.95 E-value: 5.30e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 222 GLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQE 301
Cdd:COG4785 80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159
|
90
....*....|...
gi 1270111361 302 ALKNFKRCLQLEP 314
Cdd:COG4785 160 AIADLEKALELDP 172
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
133-281 |
6.60e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 75.04 E-value: 6.60e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 133 AIAYVLVGSGLYDEAIRHFSTMLQI--------------LSPLGRINEAVNDLTKAIQLQPS-ARLYRHRGTLYFISEDY 197
Cdd:COG0457 47 NLGLAYLRLGRYEEALADYEQALELdpddaealnnlglaLQALGRYEEALEDYDKALELDPDdAEALYNLGLALLELGRY 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 198 ATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALL 277
Cdd:COG0457 127 DEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQA 206
|
....
gi 1270111361 278 LNQN 281
Cdd:COG0457 207 LRKK 210
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
132-279 |
1.30e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 71.92 E-value: 1.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 132 LAIAYVLVGSGLYDEAIRHFSTMLQILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELN 211
Cdd:COG5010 5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1270111361 212 RNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLN 279
Cdd:COG5010 85 PNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
163-314 |
5.25e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 70.37 E-value: 5.25e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 163 RINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEAL 242
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1270111361 243 KQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEP 314
Cdd:COG5010 82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
190-279 |
5.39e-13 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 65.19 E-value: 5.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 190 LYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIeAFKEALKQKVDFIDAYKSLGQAYRELGNFDAAT 269
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|
gi 1270111361 270 ESFQKALLLN 279
Cdd:COG3063 80 AYLERALELD 89
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
161-244 |
1.31e-12 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 65.41 E-value: 1.31e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 161 LGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFK 239
Cdd:COG4235 30 LGRYDEALAAYEKALRLDPdNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQ 109
|
....*
gi 1270111361 240 EALKQ 244
Cdd:COG4235 110 KLLAL 114
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
196-349 |
2.27e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 65.75 E-value: 2.27e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 196 DYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKA 275
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1270111361 276 LLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPL 349
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPL 154
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
184-311 |
8.10e-12 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 68.86 E-value: 8.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 184 YRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELG 263
Cdd:TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG 413
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1270111361 264 NFDAATESFQKALLLNQNHV-QTLQLrGMMLYHHGSLQEALKNFKRCLQ 311
Cdd:TIGR00990 414 EFAQAGKDYQKSIDLDPDFIfSHIQL-GVTQYKEGSIASSMATFRRCKK 461
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
122-364 |
1.30e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 68.19 E-value: 1.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 122 ATDNDSTNEELAIAYVLVGSGLYDEAIRHFSTMLQ--------------ILSPLGRINEAVNDLTKAIQLQPS------- 180
Cdd:TIGR02917 16 ACGDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQkdpndaearfllgkIYLALGDYAAAEKELRKALSLGYPknqvlpl 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 181 -----------------------------ARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLL 231
Cdd:TIGR02917 96 larayllqgkfqqvldelpgktllddegaAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRF 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 232 KEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQ 311
Cdd:TIGR02917 176 DEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK 255
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1270111361 312 LEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMlndplpgqKASPEYLRVKYL 364
Cdd:TIGR02917 256 KAPNSPLAHYLKALVDFQKKNYEDARETLQDAL--------KSAPEYLPALLL 300
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
129-243 |
3.99e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.90 E-value: 3.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 129 NEELAIAYVLVGSGLYDEAIRHFSTMLQILSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQS 207
Cdd:COG5010 35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPnNPELYYNLALLYSRSGDKDEAKEYYEKA 114
|
90 100 110
....*....|....*....|....*....|....*.
gi 1270111361 208 LELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALK 243
Cdd:COG5010 115 LALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
250-348 |
1.53e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.82 E-value: 1.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 250 DAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVA 329
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90
....*....|....*....
gi 1270111361 330 MGQFYEGIKAQTKVMLNDP 348
Cdd:COG4783 85 AGDYDEALALLEKALKLDP 103
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
258-348 |
1.85e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 58.26 E-value: 1.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 258 AYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKnFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGI 337
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 1270111361 338 KAQTKVMLNDP 348
Cdd:COG3063 80 AYLERALELDP 90
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
109-362 |
2.15e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 64.33 E-value: 2.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 109 QAKSIAEQKRFPFATDNDSTNEELAiAYVLVGSGLYDEAIRHFSTMlQILSP---------------LGRINEAVNDLTK 173
Cdd:TIGR02917 345 VDEAIATLSPALGLDPDDPAALSLL-GEAYLALGDFEKAAEYLAKA-TELDPenaaartqlgisklsQGDPSEAIADLET 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 174 AIQLQPS---ARLyrhrgtlyFISEDYATAHE-----DFQQSLELNR-NQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQ 244
Cdd:TIGR02917 423 AAQLDPElgrADL--------LLILSYLRSGQfdkalAAAKKLEKKQpDNASLHNLLGAIYLGKGDLAKAREAFEKALSI 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 245 KVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVcqymkg 324
Cdd:TIGR02917 495 EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE------ 568
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1270111361 325 lSHVAMGQFYEGIK--AQTKVMLNDPLPGQKASPEYLRVK 362
Cdd:TIGR02917 569 -PALALAQYYLGKGqlKKALAILNEAADAAPDSPEAWLML 607
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
119-355 |
6.97e-10 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 62.31 E-value: 6.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 119 FPFATDNDSTNEELAIAYVLVGS-----GLYDEAIRHFST--------------MLQILSPLGRINEAVNDLTKAIQLQP 179
Cdd:TIGR00990 317 FEKALDLGKLGEKEAIALNLRGTfkclkGKHLEALADLSKsieldprvtqsyikRASMNLELGDPDKAEEDFDKALKLNS 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 180 S-ARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQA 258
Cdd:TIGR00990 397 EdPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGEL 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 259 YRELGNFDAATESFQ---------------------KALLL---NQNHVQTLQL---------------RGM--MLYHHG 297
Cdd:TIGR00990 477 LLDQNKFDEAIEKFDtaieleketkpmymnvlplinKALALfqwKQDFIEAENLcekaliidpecdiavATMaqLLLQQG 556
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1270111361 298 SLQEALKNFKRCLQLEPYNEvcQYMKGLShvamgqFYEGIKAQTKVMLNDPLPGQKAS 355
Cdd:TIGR00990 557 DVDEALKLFERAAELARTEG--ELVQAIS------YAEATRTQIQVQEDYPVLASKLQ 606
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
179-360 |
3.00e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 58.00 E-value: 3.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 179 PSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALkQKVDFIDAYKSLGQA 258
Cdd:COG4785 4 LALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAL-ALPDLAQLYYERGVA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 259 YRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIK 338
Cdd:COG4785 83 YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIA 162
|
170 180
....*....|....*....|..
gi 1270111361 339 AQTKVMLNDPLPGQKASPEYLR 360
Cdd:COG4785 163 DLEKALELDPNDPERALWLYLA 184
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
174-339 |
3.28e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.39 E-value: 3.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 174 AIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYK 253
Cdd:COG3914 3 AAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 254 SLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQF 333
Cdd:COG3914 83 LAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRL 162
|
....*.
gi 1270111361 334 YEGIKA 339
Cdd:COG3914 163 EEAIAA 168
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
191-276 |
4.03e-09 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 55.00 E-value: 4.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 191 YFISEDYATAHEDFQQSLELNRN---QPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFI---DAYKSLGQAYRELGN 264
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGD 82
|
90
....*....|..
gi 1270111361 265 FDAATESFQKAL 276
Cdd:COG1729 83 YDKARATLEELI 94
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
135-316 |
6.54e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 59.71 E-value: 6.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 135 AYVLVGSGLYDEAIRHFSTML-------QILSPLGRINEAVNDLTKAI-------QLQP-SARLYRHRGTLYFISEDYAT 199
Cdd:TIGR02917 336 ASIQLRLGRVDEAIATLSPALgldpddpAALSLLGEAYLALGDFEKAAeylakatELDPeNAAARTQLGISKLSQGDPSE 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 200 AHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLN 279
Cdd:TIGR02917 416 AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495
|
170 180 190
....*....|....*....|....*....|....*..
gi 1270111361 280 QNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYN 316
Cdd:TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN 532
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
250-336 |
1.38e-08 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 57.25 E-value: 1.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 250 DAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKglshva 329
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEKYLY------ 74
|
....*..
gi 1270111361 330 MGQFYEG 336
Cdd:cd24142 75 LGQLSGG 81
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
161-314 |
1.61e-07 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 53.74 E-value: 1.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 161 LGRINE--AVNDLTKAIQlqpsARLYRHRGTLYfiseD----YATAHEDFQQSLELNRNQPtamlykgltffhrgllkea 234
Cdd:PRK11189 46 LARLNQilASRDLTDEER----AQLHYERGVLY----DslglRALARNDFSQALALRPDMA------------------- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 235 ieafkealkqkvdfiDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEP 314
Cdd:PRK11189 99 ---------------DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP 163
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
142-348 |
3.86e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 53.93 E-value: 3.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 142 GLYDEAIRHFSTMLQILSPLGRINEAVNDLTKAIQL-------QP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNRN 213
Cdd:TIGR02917 554 AWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIlneaadaAPdSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD 633
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 214 QPTAmlYKGLTFFHRGL--LKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGM 291
Cdd:TIGR02917 634 SALA--LLLLADAYAVMknYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGD 711
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1270111361 292 MLYHHGSLQEALKNFKRCLQLEPYNEVCQYMkGLSHVAMGQFYEGIKAQTKVMLNDP 348
Cdd:TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSSQNAIKL-HRALLASGNTAEAVKTLEAWLKTHP 767
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
104-342 |
4.32e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 53.55 E-value: 4.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 104 EKILSQAKSIaEQKRFPFAT-----DNDSTNEELAIAYvlvgsglYDEAIR----HFSTMLQiLSPL----GRINEAVND 170
Cdd:TIGR02917 485 REAFEKALSI-EPDFFPAAAnlariDIQEGNPDDAIQR-------FEKVLTidpkNLRAILA-LAGLylrtGNEEEAVAW 555
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 171 LTKAIQLQPSA-RLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFI 249
Cdd:TIGR02917 556 LEKAAELNPQEiEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA 635
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 250 DAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVA 329
Cdd:TIGR02917 636 LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLR 715
|
250
....*....|...
gi 1270111361 330 MGQFYEGIKAQTK 342
Cdd:TIGR02917 716 QKDYPAAIQAYRK 728
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
161-278 |
5.07e-07 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 52.22 E-value: 5.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 161 LGRINEAVNDLTKAIQLQPSARLYRHRGTLyfISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKE 240
Cdd:COG3071 206 LGDHDEAERLLREALKRQWDPRLVRLYGRL--QGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEA 283
|
90 100 110
....*....|....*....|....*....|....*...
gi 1270111361 241 ALKQKVDfIDAYKSLGQAYRELGNFDAATESFQKALLL 278
Cdd:COG3071 284 ALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALAL 320
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
249-282 |
1.33e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 45.49 E-value: 1.33e-06
10 20 30
....*....|....*....|....*....|....
gi 1270111361 249 IDAYKSLGQAYRELGNFDAATESFQKALLLNQNH 282
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
249-282 |
2.44e-06 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 44.74 E-value: 2.44e-06
10 20 30
....*....|....*....|....*....|....
gi 1270111361 249 IDAYKSLGQAYRELGNFDAATESFQKALLLNQNH 282
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
193-338 |
2.78e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 50.75 E-value: 2.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 193 ISEDYATAHEDFQQSLELNRNQPtamlYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAY-------RELGNF 265
Cdd:TIGR00990 306 ADESYEEAARAFEKALDLGKLGE----KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYikrasmnLELGDP 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 266 DAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYN-------EVCQYMKGLSHVAMGQFYEGIK 338
Cdd:TIGR00990 382 DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFifshiqlGVTQYKEGSIASSMATFRRCKK 461
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
187-244 |
9.04e-06 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 43.86 E-value: 9.04e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1270111361 187 RGTLYFISEDYATAHEDFQQSLELNRNQP---TAMLYKGLTFFHRGLLKEAIEAFKEALKQ 244
Cdd:pfam13432 3 LARAALRAGDYDDAAAALEAALARFPESPdaaAALLLLGLAALRQGRLAEAAAAYRAALRA 63
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
225-314 |
1.25e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.98 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 225 FFHRGLLKEAIEAFKEALKQKVD---FIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQT---LQLRGMMLYHHGS 298
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGD 82
|
90
....*....|....*.
gi 1270111361 299 LQEALKNFKRCLQLEP 314
Cdd:COG1729 83 YDKARATLEELIKKYP 98
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
216-276 |
1.74e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.53 E-value: 1.74e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1270111361 216 TAMLYKGLTFFHRGLLKEAIEAFKEALK--QKVDFID------AYKSLGQAYRELGNFDAATESFQKAL 276
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEiaRRLLGPDhpltatTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
135-243 |
2.41e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 46.45 E-value: 2.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 135 AYVLVGSGLYDEAIRHFSTMLQiLSP---------------LGRINEAVNDLTKAIQLQPSARlYRHrgtlyfISEDYAT 199
Cdd:COG4785 114 GLAYLLLGDYDAALEDFDRALE-LDPdyayaylnrgialyyLGRYELAIADLEKALELDPNDP-ERA------LWLYLAE 185
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1270111361 200 AHEDFQQSLE-LNRNQPTAMLYKGLTffhrgllKEAIEAFKEALK 243
Cdd:COG4785 186 RKLDPEKALAlLLEDWATAYLLQGDT-------EEARELFKLALA 223
|
|
| PRK09782 |
PRK09782 |
bacteriophage N4 receptor, outer membrane subunit; Provisional |
162-308 |
2.68e-05 |
|
bacteriophage N4 receptor, outer membrane subunit; Provisional
Pssm-ID: 236624 [Multi-domain] Cd Length: 987 Bit Score: 47.99 E-value: 2.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 162 GRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEA 241
Cdd:PRK09782 590 GQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 242 LKqkvDFIDAY---KSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLrgmmlyhHGSLQEALKNFKR 308
Cdd:PRK09782 670 HK---GLPDDPaliRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPL-------TPEQNQQRFNFRR 729
|
|
| tol_pal_ybgF |
TIGR02795 |
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ... |
182-274 |
2.99e-05 |
|
tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Pssm-ID: 188247 [Multi-domain] Cd Length: 117 Bit Score: 43.81 E-value: 2.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 182 RLYRHRGTLYFISEDYATAHEDFQQSLELNRN---QPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFI---DAYKSL 255
Cdd:TIGR02795 1 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKstyAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPkapDALLKL 80
|
90
....*....|....*....
gi 1270111361 256 GQAYRELGNFDAATESFQK 274
Cdd:TIGR02795 81 GMSLQELGDKEKAKATLQQ 99
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
247-312 |
4.21e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 42.37 E-value: 4.21e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1270111361 247 DFIDAYKSLGQAYRELGNFDAATESFQKALLLNQ-----NHVQTLQLR---GMMLYHHGSLQEALKNFKRCLQL 312
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARrllgpDHPLTATTLlnlGRLYLELGRYEEALELLERALAL 74
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
97-349 |
4.57e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.00 E-value: 4.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 97 SLLSLNTEKILSQAKSIAEQKRF------------PFATDNDSTNEELAIAYVLVGSGLYDEAIRHFSTMLQ--ILSPLG 162
Cdd:TIGR02917 626 KLLALQPDSALALLLLADAYAVMknyakaitslkrALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKqhPKAALG 705
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 163 ---------RIN---EAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGL 230
Cdd:TIGR02917 706 felegdlylRQKdypAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD 785
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 231 LKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNfDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCL 310
Cdd:TIGR02917 786 YDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAV 864
|
250 260 270
....*....|....*....|....*....|....*....
gi 1270111361 311 QLEPYNEVCQYmkglsHVAMGQFYEGIKAQTKVMLNDPL 349
Cdd:TIGR02917 865 NIAPEAAAIRY-----HLALALLATGRKAEARKELDKLL 898
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
222-263 |
5.60e-05 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 40.92 E-value: 5.60e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1270111361 222 GLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELG 263
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
162-244 |
6.36e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.06 E-value: 6.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 162 GRINEAVNDLTKAIQLQPSARL----YRHRGTLYFISEDYATAHEDFQQSLEL---NRNQPTAMLYKGLTFFHRGLLKEA 234
Cdd:COG1729 7 GDYDEAIAAFKAFLKRYPNSPLapdaLYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLELGDYDKA 86
|
90
....*....|
gi 1270111361 235 IEAFKEALKQ 244
Cdd:COG1729 87 RATLEELIKK 96
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
130-312 |
8.68e-05 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 46.39 E-value: 8.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 130 EELAIAYVLVG-----SGLYDEAIRHFSTMLQILSPlgrineavndltkAIQLQPSARLYRHRGTLYFISEDYATAHEDF 204
Cdd:COG3899 702 DRAARLLLRAArralaRGAYAEALRYLERALELLPP-------------DPEEEYRLALLLELAEALYLAGRFEEAEALL 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 205 QQSLElnrnqptAMLYKGLTFFHRGLLKEAIEafkealkqkvdfidAYKSLGQAYRelGNFDAATESFQKALLLNQNH-- 282
Cdd:COG3899 769 ERALA-------ARALAALAALRHGNPPASAR--------------AYANLGLLLL--GDYEEAYEFGELALALAERLgd 825
|
170 180 190
....*....|....*....|....*....|....
gi 1270111361 283 ----VQTLQLRGMMLYHHGSLQEALKNFKRCLQL 312
Cdd:COG3899 826 rrleARALFNLGFILHWLGPLREALELLREALEA 859
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
181-243 |
9.97e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.22 E-value: 9.97e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1270111361 181 ARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQP--------TAMLYKGLTFFHRGLLKEAIEAFKEALK 243
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLgpdhpltaTTLLNLGRLYLELGRYEEALELLERALA 73
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
131-223 |
1.15e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.69 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 131 ELAIAYVLvgSGLYDEAIRHFSTMLQiLSP---------------LGRINEAVNDLTKAIQLQPS-ARLYRHRGTLYFIS 194
Cdd:COG4235 22 LLGRAYLR--LGRYDEALAAYEKALR-LDPdnadalldlaeallaAGDTEEAEELLERALALDPDnPEALYLLGLAAFQQ 98
|
90 100 110
....*....|....*....|....*....|
gi 1270111361 195 EDYATAHEDFQQSLELN-RNQPTAMLYKGL 223
Cdd:COG4235 99 GDYAEAIAAWQKLLALLpADAPARLLEASI 128
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
250-281 |
3.92e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 38.27 E-value: 3.92e-04
10 20 30
....*....|....*....|....*....|..
gi 1270111361 250 DAYKSLGQAYRELGNFDAATESFQKALLLNQN 281
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
137-213 |
5.34e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.77 E-value: 5.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 137 VLVGSGLYDEAIRHFSTMLQI--------------LSPLGRINEAVnDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAH 201
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELdpdnadalnnlgllLLEQGRYDEAI-ALEKALKLDPNnAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 1270111361 202 EDFQQSLELNRN 213
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
231-289 |
8.12e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 38.33 E-value: 8.12e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1270111361 231 LKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLR 289
Cdd:pfam14559 4 YAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALL 62
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
162-312 |
1.24e-03 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 41.91 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 162 GRINEAVNDLTKAIQLQPSARLYrHR-------GTLYFISEDYATAHEDFQQSLELNR--NQPT----AMLYKGLTFFHR 228
Cdd:pfam17874 15 GDAERALELAEQALALLPEDDLL-ARglatfvlGEAYLCLGDLDAALQAMREAEALARraDSPHvtlwALLQQGEILRAQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 229 GLLKEAIEAFKEALK------QKVDFI--DAYKSLGQAYRELGNFDAATESFQKALLLNQNH--VQTLQLRGMMLYHH-- 296
Cdd:pfam17874 94 GRLHQALETYQQALQlardhgLQHLPLhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWepDAAVDAYVLLARIAla 173
|
170
....*....|....*..
gi 1270111361 297 -GSLQEALKNFKRCLQL 312
Cdd:pfam17874 174 qGELEEALTLLRRAELL 190
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
255-317 |
2.13e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 37.32 E-value: 2.13e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1270111361 255 LGQAYRELGNFDAATESFQKALLLNQNHVQTLQ---LRGMMLYHHGSLQEALKNFKRCLQLEPYNE 317
Cdd:pfam13432 3 LARAALRAGDYDDAAAALEAALARFPESPDAAAallLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
181-213 |
2.89e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.86 E-value: 2.89e-03
10 20 30
....*....|....*....|....*....|...
gi 1270111361 181 ARLYRHRGTLYFISEDYATAHEDFQQSLELNRN 213
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
232-282 |
2.93e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 40.69 E-value: 2.93e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1270111361 232 KEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNH 282
Cdd:cd24142 17 ELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
134-213 |
5.15e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.60 E-value: 5.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 134 IAYVLVGSGLYDEAIRHFSTMLQILSplgRINEAVNDLTkaiqlqpsARLYRHRGTLYFISEDYATAHEDFQQSLELNRN 213
Cdd:pfam13424 9 LAAVLRRLGRYDEALELLEKALEIAR---RLLGPDHPLT--------ATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
255-281 |
5.69e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 35.07 E-value: 5.69e-03
10 20
....*....|....*....|....*..
gi 1270111361 255 LGQAYRELGNFDAATESFQKALLLNQN 281
Cdd:pfam13181 7 LGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
181-213 |
7.51e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.81 E-value: 7.51e-03
10 20 30
....*....|....*....|....*....|...
gi 1270111361 181 ARLYRHRGTLYFISEDYATAHEDFQQSLELNRN 213
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
169-314 |
8.73e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 39.12 E-value: 8.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270111361 169 NDLTKAIQLQPS-----ARLYRHRGtlyfiseDYATAHEDFQQSLELNRNQPTAMLYKGLtffHRGLLKEAIEAFKEALK 243
Cdd:COG3071 183 KALPRAERRDPElaaayARALIALG-------DHDEAERLLREALKRQWDPRLVRLYGRL---QGGDPAKQLKRAEKWLK 252
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1270111361 244 QKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNhVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEP 314
Cdd:COG3071 253 KHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALAL 322
|
|
|