|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
208-406 |
2.10e-26 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 108.17 E-value: 2.10e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestl 287
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 288 grdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtdhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIy 367
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139
|
170 180 190
....*....|....*....|....*....|....*....
gi 1268743662 368 esqlgpdNPNVARTKNNLASCYLKQGKYSEAEALYKEIL 406
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLE 171
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
210-492 |
6.09e-22 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 100.76 E-value: 6.09e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 210 RLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRG--HPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTL 287
Cdd:NF040586 433 TLRLRFHLANALRSLGRYEEARELDEDTLERQRRVLGLGedHPHTLMTAGGLGADLRALGRFREALELDEETLERHRRVF 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 288 GRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIY 367
Cdd:NF040586 513 GEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERY 592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 368 ESQL-GPDNPNVARTKNNLASCYLKQGKYSEAEALYKEILTcAHVQEFGsvdDDHkPIWM----------HAEEREEMSR 436
Cdd:NF040586 593 REVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYE-RYRRRFG---PDH-PDTLaaalslandlRALGDADEAR 667
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 437 SRPRDSSAPYAEYGG----WYKACRVssptvnttlkNLGALYRRQGKLEAAETLEECALR 492
Cdd:NF040586 668 ELAREVLDRYRRVLGedhpFTLACRN----------NLAVLLRALGDPEEARELAEAALE 717
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
208-401 |
3.36e-21 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 98.45 E-value: 3.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDAL-SIREST 286
Cdd:NF040586 517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALeRYREVL 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 287 LGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAI 366
Cdd:NF040586 597 GGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDR 676
|
170 180 190
....*....|....*....|....*....|....*
gi 1268743662 367 YESQLGPDNPNVARTKNNLASCYLKQGKYSEAEAL 401
Cdd:NF040586 677 YRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
223-419 |
7.20e-20 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 94.22 E-value: 7.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 223 AQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSI--RESTLGRDHPAVAATLNN 300
Cdd:NF040586 404 LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERqrRVLGLGEDHPHTLMTAGG 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 301 LAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYESQLGPDNPNVAR 380
Cdd:NF040586 484 LGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLL 563
|
170 180 190
....*....|....*....|....*....|....*....
gi 1268743662 381 TKNNLASCYLKQGKYSEAEALYKEILTcAHVQEFGSVDD 419
Cdd:NF040586 564 SANNLARDLRELGRYAEALDLLEEALE-RYREVLGGPDH 601
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
208-398 |
2.91e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 89.21 E-value: 2.91e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERT-SGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIREST 286
Cdd:NF040586 559 PRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRR 638
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 287 LGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAI 366
Cdd:NF040586 639 FGPDHPDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEG 718
|
170 180 190
....*....|....*....|....*....|..
gi 1268743662 367 YESQLGPDNPNVARTKNNLASCYLKQGKYSEA 398
Cdd:NF040586 719 LRERLGPDHPYTLAAAVNLANDLAALGDLDAA 750
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
208-406 |
9.02e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 87.28 E-value: 9.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPD-VATMLNiLALVYRDQNKYKEAAHLLNDALSIREST 286
Cdd:NF040586 602 PDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARELAREVLDRYRRV 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 287 LGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHP---DVAKQL-NNLALLCQNQGKYEAVERYYQR 362
Cdd:NF040586 681 LGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPytlAAAVNLaNDLAALGDLDAALGEEALERLR 760
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1268743662 363 ALAIYESQLGPDNPNVARTKNNLASCYLKQGKYSEAEALYKEIL 406
Cdd:NF040586 761 RLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADTL 804
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
294-369 |
2.00e-17 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 77.04 E-value: 2.00e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1268743662 294 VAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYES 369
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
208-378 |
1.56e-16 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 83.43 E-value: 1.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTL 287
Cdd:NF040586 644 PDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERL 723
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 288 GRDHPAVAATLNNLAVLYGKRGKYKEAEPLC----QRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRA 363
Cdd:NF040586 724 GPDHPYTLAAAVNLANDLAALGDLDAALGEEalerLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADT 803
|
170
....*....|....*
gi 1268743662 364 LAIYESQLGPDNPNV 378
Cdd:NF040586 804 LARLRRVLGPDHPDT 818
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
209-403 |
1.74e-09 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 58.50 E-value: 1.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 209 ARLRTlhNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlg 288
Cdd:TIGR02521 31 AKIRV--QLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 289 rdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEirekvlGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIye 368
Cdd:TIGR02521 95 --NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-- 164
|
170 180 190
....*....|....*....|....*....|....*
gi 1268743662 369 sqlgpdNPNVARTKNNLASCYLKQGKYSEAEALYK 403
Cdd:TIGR02521 165 ------DPQRPESLLELAELYYLRGQYKDARAYLE 193
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
304-496 |
4.35e-06 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 49.92 E-value: 4.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 304 LYgKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVER------------------------- 358
Cdd:NF040586 402 LY-LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEAREldedtlerqrrvlglgedhphtlmt 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 359 ------------YYQRALAI-------YESQLGPDNPNVARTKNNLASCYLKQGKYSEAEALYKEILTcAHVQEFGsvdD 419
Cdd:NF040586 481 agglgadlralgRFREALELdeetlerHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLR-RRRRVLG---P 556
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 420 DHKPIW---------MHAEEREEMSRSRPRDSSAPYAEyggwykacRVSSPTVNTTL---KNLGALYRRQGKL-EAAETL 486
Cdd:NF040586 557 DHPRTLlsannlardLRELGRYAEALDLLEEALERYRE--------VLGGPDHPDTLraaKSLAVALRRAGRLeEALELA 628
|
250
....*....|
gi 1268743662 487 EECALRSRKQ 496
Cdd:NF040586 629 EDTYERYRRR 638
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
295-327 |
2.04e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.97 E-value: 2.04e-04
10 20 30
....*....|....*....|....*....|...
gi 1268743662 295 AATLNNLAVLYGKRGKYKEAEPLCQRALEIREK 327
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
378-496 |
5.93e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.91 E-value: 5.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 378 VARTKNNLASCYLKQGKYSEAEALYKEILtcahvqefgsvdddhkpiwmhaeereEMSRSRPRDSSAPYAeyggwykacr 457
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKAL--------------------------EIARRLLGPDHPLTA---------- 45
|
90 100 110
....*....|....*....|....*....|....*....
gi 1268743662 458 vssptvnTTLKNLGALYRRQGKLEAAETLEECALRSRKQ 496
Cdd:pfam13424 46 -------TTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
216-296 |
5.98e-04 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 42.98 E-value: 5.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 216 NLVIQYAAQGRYEVAvpLCKQALEDLERTSGRG------HPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGR 289
Cdd:NF040586 736 NLANDLAALGDLDAA--LGEEALERLRRLLGEDlragpdHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGP 813
|
....*..
gi 1268743662 290 DHPAVAA 296
Cdd:NF040586 814 DHPDTVA 820
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
209-392 |
6.09e-04 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 43.15 E-value: 6.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 209 ARLRTLHNLviqyaAQGRYEVAVPLCKQALedlertsgRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLG 288
Cdd:PRK11447 272 ARAQGLAAV-----DSGQGGKAIPELQQAV--------RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 289 RDHPAVAATLNN--LAVLYG----KRGKYKEAEPLCQRALEIREK----VLGTDhpDVAkqlnnLAllcqnQGKYEAVER 358
Cdd:PRK11447 339 RDKWESLLKVNRywLLIQQGdaalKANNLAQAERLYQQARQVDNTdsyaVLGLG--DVA-----MA-----RKDYAAAER 406
|
170 180 190
....*....|....*....|....*....|....
gi 1268743662 359 YYQRALaiyesQLGPDNPNVARtknNLASCYLKQ 392
Cdd:PRK11447 407 YYQQAL-----RMDPGNTNAVR---GLANLYRQQ 432
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
264-404 |
1.67e-03 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 40.80 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 264 RDQNKYKEAAHLLNDA--LSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPdvAKQ-- 339
Cdd:cd24145 114 SELGKWELRERLLKKAveILLKLGELWMSPSEVGAFLEELATAYDLYGRFCLALPLYMQALSLKGQILLSQAN--CHSlv 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 340 -LNNLAL-LCQNQGK---------------------YEAVERYYQRALAIYESQLGPD-----NPNVARTKNNLASCYLK 391
Cdd:cd24145 192 lMNNEAAeLALHALRkplsstlieasrlpqksrdqlLEAALKWAQKALDVAKSIKPKDrdpecDQACALALYNLGVIAEM 271
|
170
....*....|...
gi 1268743662 392 QGKYSEAEALYKE 404
Cdd:cd24145 272 LGNLDEARKLYKE 284
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
33-148 |
2.81e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.81 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 33 LEALHSEHQAVLQSLSHTIECLQQGGHEEGLVHEKARQLRRSMENIELGLSEAQ-VMLALASHLSTVESEKQKLRAQVRR 111
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkELYALANEISRLEQQKQILRERLAN 313
|
90 100 110
....*....|....*....|....*....|....*..
gi 1268743662 112 LCQENQWLRDELAGTQQRLQRSEQAVAQLEEEKKHLE 148
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
60-178 |
6.19e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 39.23 E-value: 6.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 60 EEGLVHEKARQLRRSMENIElglSEAQVMLALASHLSTV-ESEKQKLRAQVRRLCQENQWLRDELAGTQQRLQRSEQAVA 138
Cdd:smart00787 166 ELELLNSIKPKLRDRKDALE---EELRQLKQLEDELEDCdPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIE 242
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1268743662 139 QLEEEKKHLEF-LRQLRQYDEDGHGMEEKEGEATKDSLDDL 178
Cdd:smart00787 243 DLTNKKSELNTeIAEAEKKLEQCRGFTFKEIEKLKEQLKLL 283
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
208-406 |
2.10e-26 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 108.17 E-value: 2.10e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestl 287
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 288 grdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtdhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIy 367
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139
|
170 180 190
....*....|....*....|....*....|....*....
gi 1268743662 368 esqlgpdNPNVARTKNNLASCYLKQGKYSEAEALYKEIL 406
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLE 171
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
210-492 |
6.09e-22 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 100.76 E-value: 6.09e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 210 RLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRG--HPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTL 287
Cdd:NF040586 433 TLRLRFHLANALRSLGRYEEARELDEDTLERQRRVLGLGedHPHTLMTAGGLGADLRALGRFREALELDEETLERHRRVF 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 288 GRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIY 367
Cdd:NF040586 513 GEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERY 592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 368 ESQL-GPDNPNVARTKNNLASCYLKQGKYSEAEALYKEILTcAHVQEFGsvdDDHkPIWM----------HAEEREEMSR 436
Cdd:NF040586 593 REVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYE-RYRRRFG---PDH-PDTLaaalslandlRALGDADEAR 667
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 437 SRPRDSSAPYAEYGG----WYKACRVssptvnttlkNLGALYRRQGKLEAAETLEECALR 492
Cdd:NF040586 668 ELAREVLDRYRRVLGedhpFTLACRN----------NLAVLLRALGDPEEARELAEAALE 717
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
208-401 |
3.36e-21 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 98.45 E-value: 3.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDAL-SIREST 286
Cdd:NF040586 517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALeRYREVL 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 287 LGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAI 366
Cdd:NF040586 597 GGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDR 676
|
170 180 190
....*....|....*....|....*....|....*
gi 1268743662 367 YESQLGPDNPNVARTKNNLASCYLKQGKYSEAEAL 401
Cdd:NF040586 677 YRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
223-419 |
7.20e-20 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 94.22 E-value: 7.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 223 AQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSI--RESTLGRDHPAVAATLNN 300
Cdd:NF040586 404 LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERqrRVLGLGEDHPHTLMTAGG 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 301 LAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYESQLGPDNPNVAR 380
Cdd:NF040586 484 LGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLL 563
|
170 180 190
....*....|....*....|....*....|....*....
gi 1268743662 381 TKNNLASCYLKQGKYSEAEALYKEILTcAHVQEFGSVDD 419
Cdd:NF040586 564 SANNLARDLRELGRYAEALDLLEEALE-RYREVLGGPDH 601
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
127-405 |
1.46e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 92.75 E-value: 1.46e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 127 QQRLQRSEQAVAQLEEEKKHLEFLRQLRQYDEdghgmEEKEGEATKDSLDDLFPNEEEEDSGNDLSRGQGAAAAQQGGYE 206
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAEL-----EAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 207 IPARLRTLHNLviQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrest 286
Cdd:COG3914 76 LLAALLELAAL--LLQALGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALAL---- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 287 lgrdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtdhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAI 366
Cdd:COG3914 142 ----NPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD--------PDNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
|
250 260 270
....*....|....*....|....*....|....*....
gi 1268743662 367 yesqlgpdNPNVARTKNNLASCYLKQGKYSEAEALYKEI 405
Cdd:COG3914 210 --------DPDNADAHSNLLFALRQACDWEVYDRFEELL 240
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
182-407 |
1.66e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 92.75 E-value: 1.66e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 182 EEEEDSGNDLSRGQGAAAAQQGGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRghPDVATMLNILAL 261
Cdd:COG3914 9 LAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAAL--LLLAALLELAAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 262 VYRDQNKYKEAAHLLNDALSIrestlgrdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtdHPDVAKQLN 341
Cdd:COG3914 87 LLQALGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALAL--------NPDFAEAYL 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1268743662 342 NLALLCQNQGKYEAVERYYQRALAIyesqlgpdNPNVARTKNNLASCYLKQGKYSEAEALYKEILT 407
Cdd:COG3914 151 NLGEALRRLGRLEEAIAALRRALEL--------DPDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
208-398 |
2.91e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 89.21 E-value: 2.91e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERT-SGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIREST 286
Cdd:NF040586 559 PRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRR 638
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 287 LGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAI 366
Cdd:NF040586 639 FGPDHPDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEG 718
|
170 180 190
....*....|....*....|....*....|..
gi 1268743662 367 YESQLGPDNPNVARTKNNLASCYLKQGKYSEA 398
Cdd:NF040586 719 LRERLGPDHPYTLAAAVNLANDLAALGDLDAA 750
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
208-406 |
9.02e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 87.28 E-value: 9.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPD-VATMLNiLALVYRDQNKYKEAAHLLNDALSIREST 286
Cdd:NF040586 602 PDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARELAREVLDRYRRV 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 287 LGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHP---DVAKQL-NNLALLCQNQGKYEAVERYYQR 362
Cdd:NF040586 681 LGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPytlAAAVNLaNDLAALGDLDAALGEEALERLR 760
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1268743662 363 ALAIYESQLGPDNPNVARTKNNLASCYLKQGKYSEAEALYKEIL 406
Cdd:NF040586 761 RLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADTL 804
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
208-406 |
1.89e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 82.36 E-value: 1.89e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestl 287
Cdd:COG0457 39 PDDAEALYNLGLAYLRLGRYEEALADYEQALEL--------DPDDAEALNNLGLALQALGRYEEALEDYDKALELD---- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 288 grdhPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtdhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIY 367
Cdd:COG0457 107 ----PDDAEALYNLGLALLELGRYDEAIEAYERALELD--------PDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
170 180 190
....*....|....*....|....*....|....*....
gi 1268743662 368 ESQLGPDNPNVARTKNNLASCYLKQGKYSEAEALYKEIL 406
Cdd:COG0457 175 LAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAI 213
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
294-369 |
2.00e-17 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 77.04 E-value: 2.00e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1268743662 294 VAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYES 369
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
208-378 |
1.56e-16 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 83.43 E-value: 1.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTL 287
Cdd:NF040586 644 PDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERL 723
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 288 GRDHPAVAATLNNLAVLYGKRGKYKEAEPLC----QRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRA 363
Cdd:NF040586 724 GPDHPYTLAAAVNLANDLAALGDLDAALGEEalerLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADT 803
|
170
....*....|....*
gi 1268743662 364 LAIYESQLGPDNPNV 378
Cdd:NF040586 804 LARLRRVLGPDHPDT 818
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
221-406 |
1.78e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 77.08 E-value: 1.78e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 221 YAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgrdhPAVAATLNN 300
Cdd:COG2956 52 YRRRGEYDRAIRIHQKLLER--------DPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD--------PDDAEALRL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 301 LAVLYGKRGKYKEAEPLCQRALEIrekvlgtdHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyesqlgpdNPNVAR 380
Cdd:COG2956 116 LAEIYEQEGDWEKAIEVLERLLKL--------GPENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCAR 179
|
170 180
....*....|....*....|....*.
gi 1268743662 381 TKNNLASCYLKQGKYSEAEALYKEIL 406
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERAL 205
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
251-327 |
2.54e-15 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 70.88 E-value: 2.54e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1268743662 251 DVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREK 327
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
335-406 |
1.01e-13 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 66.64 E-value: 1.01e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1268743662 335 DVAKQLNNLALLCQNQGKYEAVERYYQRALAIYESQLGPDNPNVARTKNNLASCYLKQGKYSEAEALYKEIL 406
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
220-521 |
1.41e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 71.30 E-value: 1.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 220 QYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlgrdHPAVAATLN 299
Cdd:COG2956 17 NYLLNGQPDKAIDLLEEALEL--------DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER--------DPDRAEALL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 300 NLAVLYGKRGKYKEAEPLCQRALEIRekvlgtdhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyesqlgpdNPNVA 379
Cdd:COG2956 81 ELAQDYLKAGLLDRAEELLEKLLELD--------PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL--------GPENA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 380 RTKNNLASCYLKQGKYSEAEALYKEILtcahvqefgSVDDDHKPIWMHAEEREEMSRSrprdssapYAEYGGWYKACRVS 459
Cdd:COG2956 145 HAYCELAELYLEQGDYDEAIEALEKAL---------KLDPDCARALLLLAELYLEQGD--------YEEAIAALERALEQ 207
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1268743662 460 SPTVNTTLKNLGALYRRQGKLEAAETLEECALRsrkQGTDPISQTKVAELLGEGDGRKAIQE 521
Cdd:COG2956 208 DPDYLPALPRLAELYEKLGDPEEALELLRKALE---LDPSDDLLLALADLLERKEGLEAALA 266
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
294-335 |
4.40e-13 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 63.68 E-value: 4.40e-13
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1268743662 294 VAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPD 335
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
259-406 |
1.23e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 65.60 E-value: 1.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 259 LALVYRDQNKYKEAAHLLNDALsirestlgRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtdHPDVAK 338
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKAL--------ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL--------DPDEPE 73
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1268743662 339 QLNNLALLCQNQGKYEAVERYYQRALAIYesqlgPDNPNVARtknNLASCYLKQGKYSEAEALYKEIL 406
Cdd:COG4783 74 ARLNLGLALLKAGDYDEALALLEKALKLD-----PEHPEAYL---RLARAYRALGRPDEAIAALEKAL 133
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
209-367 |
2.67e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.44 E-value: 2.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 209 ARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlg 288
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL------ 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1268743662 289 rdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEirekvLGTDHPDVakqLNNLALLCQNQGKYEAVERYYQRALAIY 367
Cdd:COG4783 68 --DPDEPEARLNLGLALLKAGDYDEALALLEKALK-----LDPEHPEA---YLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
210-285 |
3.43e-12 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 62.02 E-value: 3.43e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1268743662 210 RLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRES 285
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
258-406 |
1.56e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 65.14 E-value: 1.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 258 ILALVYRDQNKYKEAAHLLNDALSIrestlgrdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtdHPDVA 337
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALEL--------DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER--------DPDRA 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1268743662 338 KQLNNLALLCQNQGKYEAVERYYQRALaiyesQLGPDNPNVARtknNLASCYLKQGKYSEAEALYKEIL 406
Cdd:COG2956 77 EALLELAQDYLKAGLLDRAEELLEKLL-----ELDPDDAEALR---LLAEIYEQEGDWEKAIEVLERLL 137
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
304-406 |
2.44e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 60.18 E-value: 2.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 304 LYGKRGKYKEAEPLCQRALEIrekvlgtdHPDVAKQLNNLALLCQNQGKYEAVERYyQRALAIyesqlgpdNPNVARTKN 383
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63
|
90 100
....*....|....*....|...
gi 1268743662 384 NLASCYLKQGKYSEAEALYKEIL 406
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERAL 86
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
253-406 |
5.89e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.13 E-value: 5.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 253 ATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtd 332
Cdd:COG5010 12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL-------- 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1268743662 333 HPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyesqlgpdNPNVARTKNNLASCYLKQGKYSEAEALYKEIL 406
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRAL 149
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
262-371 |
1.23e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 58.26 E-value: 1.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 262 VYRDQNKYKEAAHLLNDALSIrestlgrdHPAVAATLNNLAVLYGKRGKYKEAEPLcQRALEIrekvlgtdHPDVAKQLN 341
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63
|
90 100 110
....*....|....*....|....*....|
gi 1268743662 342 NLALLCQNQGKYEAVERYYQRALAIYESQL 371
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
208-371 |
1.23e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 61.95 E-value: 1.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEdlertsgrGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestl 287
Cdd:COG0457 73 PDDAEALNNLGLALQALGRYEEALEDYDKALE--------LDPDDAEALYNLGLALLELGRYDEAIEAYERALELD---- 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 288 grdhPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIY 367
Cdd:COG0457 141 ----PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
|
....
gi 1268743662 368 ESQL 371
Cdd:COG0457 217 AALA 220
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
293-406 |
7.81e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.51 E-value: 7.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 293 AVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtdHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYesqlg 372
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD----- 68
|
90 100 110
....*....|....*....|....*....|....
gi 1268743662 373 PDNPNVArtkNNLASCYLKQGKYSEAEALYKEIL 406
Cdd:COG4783 69 PDEPEAR---LNLGLALLKAGDYDEALALLEKAL 99
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
209-403 |
1.74e-09 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 58.50 E-value: 1.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 209 ARLRTlhNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlg 288
Cdd:TIGR02521 31 AKIRV--QLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 289 rdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEirekvlGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIye 368
Cdd:TIGR02521 95 --NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-- 164
|
170 180 190
....*....|....*....|....*....|....*
gi 1268743662 369 sqlgpdNPNVARTKNNLASCYLKQGKYSEAEALYK 403
Cdd:TIGR02521 165 ------DPQRPESLLELAELYYLRGQYKDARAYLE 193
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
216-403 |
2.08e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 58.00 E-value: 2.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 216 NLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgrdhPAVA 295
Cdd:COG4785 36 ALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD--------PDLA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 296 ATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtdhPDVAKQLNNLALLCQNQGKYEA----VERYYQ-------RAL 364
Cdd:COG4785 108 EAYNNRGLAYLLLGDYDAALEDFDRALELD--------PDYAYAYLNRGIALYYLGRYELaiadLEKALEldpndpeRAL 179
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1268743662 365 AIYESQLGPDNPN-VARTKNNLASCYLKQGKYSEAEALYK 403
Cdd:COG4785 180 WLYLAERKLDPEKaLALLLEDWATAYLLQGDTEEARELFK 219
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
208-366 |
2.80e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 56.12 E-value: 2.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestl 287
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL----- 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1268743662 288 grdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtdHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAI 366
Cdd:COG5010 84 ---DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
289-406 |
6.40e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.63 E-value: 6.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 289 RDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtdhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIye 368
Cdd:COG4235 11 AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALAL-- 80
|
90 100 110
....*....|....*....|....*....|....*...
gi 1268743662 369 sqlgpdNPNVARTKNNLASCYLKQGKYSEAEALYKEIL 406
Cdd:COG4235 81 ------DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLL 112
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
221-329 |
9.23e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.87 E-value: 9.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 221 YAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLlNDALSIrestlgrdHPAVAATLNN 300
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALLN 64
|
90 100
....*....|....*....|....*....
gi 1268743662 301 LAVLYGKRGKYKEAEPLCQRALEIREKVL 329
Cdd:COG3063 65 LAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
252-292 |
1.21e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 50.96 E-value: 1.21e-08
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1268743662 252 VATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGRDHP 292
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHP 41
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
236-386 |
6.20e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.55 E-value: 6.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 236 QALEDLERTSgRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgrdhPAVAATLNNLAVLYGKRGKYKEAE 315
Cdd:COG4235 1 EAIARLRQAL-AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAE 71
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1268743662 316 PLCQRALEIrekvlgtdHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAiyesqLGPDNPNVARTKNNLA 386
Cdd:COG4235 72 ELLERALAL--------DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLA-----LLPADAPARLLEASIA 129
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
307-406 |
6.76e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.15 E-value: 6.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 307 KRGKYKEAEPLCQRALEirekvlgtDHPD---VAKQLNNLALLCQNQGKYEAVERYYQRALAIYesqlgPDNPNVARTKN 383
Cdd:COG1729 5 KAGDYDEAIAAFKAFLK--------RYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY-----PDSPKAPDALL 71
|
90 100
....*....|....*....|...
gi 1268743662 384 NLASCYLKQGKYSEAEALYKEIL 406
Cdd:COG1729 72 KLGLSYLELGDYDKARATLEELI 94
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
221-398 |
1.31e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 54.70 E-value: 1.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 221 YAAQGRYEVAVPLCKQALEdLERTSGrghpdvATMLniLALVYRDQNKYKEAAHLLNDALsirestlgRDHPAVAATLNN 300
Cdd:TIGR02917 713 YLRQKDYPAAIQAYRKALK-RAPSSQ------NAIK--LHRALLASGNTAEAVKTLEAWL--------KTHPNDAVLRTA 775
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 301 LAVLYGKRGKYKEAEPLCQRALEIrekvlgtdHPDVAKQLNNLALLCQNQGKYEAVErYYQRALaiyesQLGPDNPNVAR 380
Cdd:TIGR02917 776 LAELYLAQKDYDKAIKHYQTVVKK--------APDNAVVLNNLAWLYLELKDPRALE-YAERAL-----KLAPNIPAILD 841
|
170
....*....|....*...
gi 1268743662 381 TknnLASCYLKQGKYSEA 398
Cdd:TIGR02917 842 T---LGWLLVEKGEADRA 856
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
247-407 |
1.92e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 54.32 E-value: 1.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 247 RGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlgrdHPAVAATLNNLAVLYGKRgKYKEAEPLCQRALEIRe 326
Cdd:TIGR02917 764 KTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK--------APDNAVVLNNLAWLYLEL-KDPRALEYAERALKLA- 833
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 327 kvlgtdhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyesqlgpdNPNVARTKNNLASCYLKQGKYSEAEALYKEIL 406
Cdd:TIGR02917 834 -------PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAAIRYHLALALLATGRKAEARKELDKLL 898
|
.
gi 1268743662 407 T 407
Cdd:TIGR02917 899 N 899
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
161-365 |
2.94e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 48.76 E-value: 2.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 161 HGMEEKEGEATKDSLDDLFPNEEEEDSGNDLSRGQGAAAAQQGGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALED 240
Cdd:COG4785 23 AILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALEL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 241 lertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgrdhPAVAATLNNLAVLYGKRGKYKEAEPLCQR 320
Cdd:COG4785 103 --------DPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD--------PDYAYAYLNRGIALYYLGRYELAIADLEK 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1268743662 321 ALEIREK----------VLGTDHPDVAKQL--NNLALLCQNQGKYEAVERYYQRALA 365
Cdd:COG4785 167 ALELDPNdperalwlylAERKLDPEKALALllEDWATAYLLQGDTEEARELFKLALA 223
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
304-496 |
4.35e-06 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 49.92 E-value: 4.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 304 LYgKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVER------------------------- 358
Cdd:NF040586 402 LY-LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEAREldedtlerqrrvlglgedhphtlmt 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 359 ------------YYQRALAI-------YESQLGPDNPNVARTKNNLASCYLKQGKYSEAEALYKEILTcAHVQEFGsvdD 419
Cdd:NF040586 481 agglgadlralgRFREALELdeetlerHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLR-RRRRVLG---P 556
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 420 DHKPIW---------MHAEEREEMSRSRPRDSSAPYAEyggwykacRVSSPTVNTTL---KNLGALYRRQGKL-EAAETL 486
Cdd:NF040586 557 DHPRTLlsannlardLRELGRYAEALDLLEEALERYRE--------VLGGPDHPDTLraaKSLAVALRRAGRLeEALELA 628
|
250
....*....|
gi 1268743662 487 EECALRSRKQ 496
Cdd:NF040586 629 EDTYERYRRR 638
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
336-377 |
6.97e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 43.26 E-value: 6.97e-06
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1268743662 336 VAKQLNNLALLCQNQGKYEAVERYYQRALAIYESQLGPDNPN 377
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
211-251 |
8.40e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 42.87 E-value: 8.40e-06
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1268743662 211 LRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPD 251
Cdd:pfam13374 2 ASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
208-324 |
9.17e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 9.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLertsgrghPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestl 287
Cdd:COG4235 14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALAL----- 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 1268743662 288 grdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEI 324
Cdd:COG4235 81 ---DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
208-324 |
1.83e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.80 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEdlertsgrGHPDVATMLNILALVYRDQNKYKEAAHLLNDALsirestl 287
Cdd:COG4783 35 PDNPEAFALLGEILLQLGDLDEAIVLLHEALE--------LDPDEPEARLNLGLALLKAGDYDEALALLEKAL------- 99
|
90 100 110
....*....|....*....|....*....|....*..
gi 1268743662 288 gRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEI 324
Cdd:COG4783 100 -KLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
295-327 |
3.80e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.87 E-value: 3.80e-05
10 20 30
....*....|....*....|....*....|...
gi 1268743662 295 AATLNNLAVLYGKRGKYKEAEPLCQRALEIREK 327
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
263-387 |
7.53e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 42.29 E-value: 7.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 263 YRDQNKYKEAAHLLNDALSirestLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEirekvLGTDHPDVAKQLNN 342
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLK-----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLK-----RYPDSPKAPDALLK 72
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1268743662 343 LALLCQNQGKYEAVERYYQRALAIYesqlgPDNPNVARTKNNLAS 387
Cdd:COG1729 73 LGLSYLELGDYDKARATLEELIKKY-----PDSEAAKEARARLAR 112
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
235-400 |
1.52e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 45.07 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 235 KQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgrdhPAVAATLNNLAVLYGKRGKYKEA 314
Cdd:TIGR02917 107 QQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID--------PRSLYAKLGLAQLALAENRFDEA 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 315 EPLCQRALEIrekvlgtdHPDVAKQLNNLALLCQNQGKYEAVERYYQRALaiyesQLGPDNPNVartKNNLASCYLKQGK 394
Cdd:TIGR02917 179 RALIDEVLTA--------DPGNVDALLLKGDLLLSLGNIELALAAYRKAI-----ALRPNNIAV---LLALATILIEAGE 242
|
....*.
gi 1268743662 395 YSEAEA 400
Cdd:TIGR02917 243 FEEAEK 248
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
295-327 |
2.04e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.97 E-value: 2.04e-04
10 20 30
....*....|....*....|....*....|...
gi 1268743662 295 AATLNNLAVLYGKRGKYKEAEPLCQRALEIREK 327
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
220-419 |
2.12e-04 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 43.84 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 220 QYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALsiresTLGRDHPAVAATLN 299
Cdd:pfam17874 89 ILRAQGRLHQALETYQQALQLARDHGLQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGI-----QLGRQWEPDAAVDA 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 300 NLAVLYGK--RGKYKEAEPLCQRALEI-REKVLGTDHPDVAKQLnnLALLCQNQGKYEAVEryyqRALAIYESQLGPDNP 376
Cdd:pfam17874 164 YVLLARIAlaQGELEEALTLLRRAELLaRQSFFHVDWLANAERV--RVRLWLARGDLRAAV----RWLRAAEPPSDADNH 237
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1268743662 377 NVARTKNNLASCYLKQGKYSEAEALYKEILTCAhvQEFGSVDD 419
Cdd:pfam17874 238 FLERELRNLARVLLALGRFDDALSLLERLQNLA--EQLGRVRS 278
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
337-369 |
4.47e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.79 E-value: 4.47e-04
10 20 30
....*....|....*....|....*....|...
gi 1268743662 337 AKQLNNLALLCQNQGKYEAVERYYQRALAIYES 369
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
271-406 |
4.53e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.21 E-value: 4.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 271 EAAHLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQ 350
Cdd:COG4785 7 ALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSL 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1268743662 351 GKYEAVERYYQRALAIyesqlgpdNPNVARTKNNLASCYLKQGKYSEAEALYKEIL 406
Cdd:COG4785 87 GDYDLAIADFDQALEL--------DPDLAEAYNNRGLAYLLLGDYDAALEDFDRAL 134
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
378-496 |
5.93e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.91 E-value: 5.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 378 VARTKNNLASCYLKQGKYSEAEALYKEILtcahvqefgsvdddhkpiwmhaeereEMSRSRPRDSSAPYAeyggwykacr 457
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKAL--------------------------EIARRLLGPDHPLTA---------- 45
|
90 100 110
....*....|....*....|....*....|....*....
gi 1268743662 458 vssptvnTTLKNLGALYRRQGKLEAAETLEECALRSRKQ 496
Cdd:pfam13424 46 -------TTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
216-296 |
5.98e-04 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 42.98 E-value: 5.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 216 NLVIQYAAQGRYEVAvpLCKQALEDLERTSGRG------HPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGR 289
Cdd:NF040586 736 NLANDLAALGDLDAA--LGEEALERLRRLLGEDlragpdHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGP 813
|
....*..
gi 1268743662 290 DHPAVAA 296
Cdd:NF040586 814 DHPDTVA 820
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
209-392 |
6.09e-04 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 43.15 E-value: 6.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 209 ARLRTLHNLviqyaAQGRYEVAVPLCKQALedlertsgRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLG 288
Cdd:PRK11447 272 ARAQGLAAV-----DSGQGGKAIPELQQAV--------RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 289 RDHPAVAATLNN--LAVLYG----KRGKYKEAEPLCQRALEIREK----VLGTDhpDVAkqlnnLAllcqnQGKYEAVER 358
Cdd:PRK11447 339 RDKWESLLKVNRywLLIQQGdaalKANNLAQAERLYQQARQVDNTdsyaVLGLG--DVA-----MA-----RKDYAAAER 406
|
170 180 190
....*....|....*....|....*....|....
gi 1268743662 359 YYQRALaiyesQLGPDNPNVARtknNLASCYLKQ 392
Cdd:PRK11447 407 YYQQAL-----RMDPGNTNAVR---GLANLYRQQ 432
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
349-407 |
9.34e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.20 E-value: 9.34e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1268743662 349 NQGKYEAVERYYQRALAIYesqlgPDNPNVARTKNNLASCYLKQGKYSEAEALYKEILT 407
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRY-----PNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLK 58
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
259-324 |
9.99e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.09 E-value: 9.99e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1268743662 259 LALVYRDQNKYKEAAHLLNDALsiresTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEI 324
Cdd:pfam13432 3 LARAALRAGDYDDAAAALEAAL-----ARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRA 63
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
342-409 |
1.05e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 37.70 E-value: 1.05e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1268743662 342 NLALLCQNQGKYEAVERYYQRALAiyesqLGPDNPNVARTKNNLASCYLKQGKYSEAEALYKEILTCA 409
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALA-----RFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAA 64
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
297-330 |
1.15e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 36.75 E-value: 1.15e-03
10 20 30
....*....|....*....|....*....|....
gi 1268743662 297 TLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLG 330
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYD 34
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
264-404 |
1.67e-03 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 40.80 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 264 RDQNKYKEAAHLLNDA--LSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPdvAKQ-- 339
Cdd:cd24145 114 SELGKWELRERLLKKAveILLKLGELWMSPSEVGAFLEELATAYDLYGRFCLALPLYMQALSLKGQILLSQAN--CHSlv 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 340 -LNNLAL-LCQNQGK---------------------YEAVERYYQRALAIYESQLGPD-----NPNVARTKNNLASCYLK 391
Cdd:cd24145 192 lMNNEAAeLALHALRkplsstlieasrlpqksrdqlLEAALKWAQKALDVAKSIKPKDrdpecDQACALALYNLGVIAEM 271
|
170
....*....|...
gi 1268743662 392 QGKYSEAEALYKE 404
Cdd:cd24145 272 LGNLDEARKLYKE 284
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
208-287 |
2.27e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 208 PARLRTLHNLVIQYAAQGRYEVAVPLcKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTL 287
Cdd:COG3063 23 PDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
379-406 |
2.65e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.86 E-value: 2.65e-03
10 20
....*....|....*....|....*...
gi 1268743662 379 ARTKNNLASCYLKQGKYSEAEALYKEIL 406
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
33-148 |
2.81e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.81 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 33 LEALHSEHQAVLQSLSHTIECLQQGGHEEGLVHEKARQLRRSMENIELGLSEAQ-VMLALASHLSTVESEKQKLRAQVRR 111
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkELYALANEISRLEQQKQILRERLAN 313
|
90 100 110
....*....|....*....|....*....|....*..
gi 1268743662 112 LCQENQWLRDELAGTQQRLQRSEQAVAQLEEEKKHLE 148
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
350-406 |
3.04e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.41 E-value: 3.04e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1268743662 350 QGKYEAVERYYQRALAIYesqlgPDNPNVartKNNLASCYLKQGKYSEAEALYKEIL 406
Cdd:pfam14559 1 EGDYAEALELLEQALAED-----PDNAEA---RLGLAEALLALGRLDEAEALLAALP 49
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
337-369 |
4.57e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 4.57e-03
10 20 30
....*....|....*....|....*....|...
gi 1268743662 337 AKQLNNLALLCQNQGKYEAVERYYQRALAIYES 369
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
379-407 |
5.40e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.73 E-value: 5.40e-03
10 20
....*....|....*....|....*....
gi 1268743662 379 ARTKNNLASCYLKQGKYSEAEALYKEILT 407
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALE 29
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
235-406 |
5.69e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 39.68 E-value: 5.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 235 KQALEDLERTSGRgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlgrdHPAVAATLNNLAVLYGKRGKYKEA 314
Cdd:TIGR02917 618 NKAVSSFKKLLAL-QPDSALALLLLADAYAVMKNYAKAITSLKRALEL--------KPDNTEAQIGLAQLLLAAKRTESA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 315 EPLCQRALEIREKvlgtdHPDVAKQLNNLALLcqnQGKYEAVERYYQRALAIYES-----QLG----------------- 372
Cdd:TIGR02917 689 KKIAKSLQKQHPK-----AALGFELEGDLYLR---QKDYPAAIQAYRKALKRAPSsqnaiKLHrallasgntaeavktle 760
|
170 180 190
....*....|....*....|....*....|....*..
gi 1268743662 373 ---PDNPNVARTKNNLASCYLKQGKYSEAEALYKEIL 406
Cdd:TIGR02917 761 awlKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVV 797
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
340-374 |
5.93e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 34.82 E-value: 5.93e-03
10 20 30
....*....|....*....|....*....|....*
gi 1268743662 340 LNNLALLCQNQGKYEAVERYYQRALAIYESQLGPD 374
Cdd:pfam13176 2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
60-178 |
6.19e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 39.23 E-value: 6.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 60 EEGLVHEKARQLRRSMENIElglSEAQVMLALASHLSTV-ESEKQKLRAQVRRLCQENQWLRDELAGTQQRLQRSEQAVA 138
Cdd:smart00787 166 ELELLNSIKPKLRDRKDALE---EELRQLKQLEDELEDCdPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIE 242
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1268743662 139 QLEEEKKHLEF-LRQLRQYDEDGHGMEEKEGEATKDSLDDL 178
Cdd:smart00787 243 DLTNKKSELNTeIAEAEKKLEQCRGFTFKEIEKLKEQLKLL 283
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
378-421 |
7.52e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 34.79 E-value: 7.52e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 1268743662 378 VARTKNNLASCYLKQGKYSEAEALYKEILTCaHVQEFGsvdDDH 421
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAI-RERVLG---PDH 40
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
221-280 |
8.28e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 35.39 E-value: 8.28e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 221 YAAQGRYEVAVPLCKQALEdlertSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDAL 280
Cdd:pfam13432 7 ALRAGDYDDAAAALEAALA-----RFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAAL 61
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
19-170 |
8.96e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 39.28 E-value: 8.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 19 QEEILGSTKVVSQGLEALHSEHQ---AVLQSLSHTIECLQQ--GGHEEGLVHEKARQLRRSME-------NIELGLSEAQ 86
Cdd:TIGR02169 739 LEELEEDLSSLEQEIENVKSELKeleARIEELEEDLHKLEEalNDLEARLSHSRIPEIQAELSkleeevsRIEARLREIE 818
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268743662 87 VML-ALASHLSTVESEKQKLRAQVRRL-------CQENQWLRDELAGTQQRLQRSEQAVAQLEEEKKHLEflRQLRQYDE 158
Cdd:TIGR02169 819 QKLnRLTLEKEYLEKEIQELQEQRIDLkeqiksiEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK--KERDELEA 896
|
170
....*....|..
gi 1268743662 159 DGHGMEEKEGEA 170
Cdd:TIGR02169 897 QLRELERKIEEL 908
|
|
| |
