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Conserved domains on  [gi|1264203775|ref|NP_001343996.1|]
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lysosomal acid phosphatase isoform 1x precursor [Mus musculus]

Protein Classification

histidine phosphatase family protein( domain architecture ID 10162533)

histidine phosphatase family protein contains a conserved His residue that is transiently phosphorylated during the catalytic cycle

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
HP_HAP_like cd07061
Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His ...
33-330 1.13e-47

Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction; Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been shown in mouse models to suppress pain by functioning as an ecto-5prime-nucleotidase. In vivo it dephosphorylates extracellular adenosine monophosphate (AMP) generating adenosine,and leading to the activation of A1-adenosine receptors in dorsal spinal cord.


:

Pssm-ID: 132717 [Multi-domain]  Cd Length: 242  Bit Score: 163.70  E-value: 1.13e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775  33 LRFVTLLYRHGDRSPvktypkdpyqeekwpqgfGQLTKEGMLQHWELGQALRQRY-HGFLNTSYHRQEVYVRSTDFDRTL 111
Cdd:cd07061     2 LEQVQVLSRHGDRYP------------------GELTPFGRQQAFELGRYFRQRYgELLLLHSYNRSDLYIRSSDSQRTL 63
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775 112 MSAEANLAGLFPPNEvqhfnpnisWQPIPVHTVPITEDRllkfplgpcpryeqlqnetrqtpeyqnrsiqnaqflnmvan 191
Cdd:cd07061    64 QSAQAFLAGLFPPDG---------WQPIAVHTIPEEEDD----------------------------------------- 93
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775 192 etgltnvtletIWNVYDTLFCEQTHGLLLPPWA---SPQTVQRLSQLKDFSFLFLFGIHEQVqkARLQGGVLLAQILKNL 268
Cdd:cd07061    94 -----------VSNLFDLCAYETVAKGYSAPFCdlfTEEEWVKLEYLNDLKFYYGYGPGNPL--ARAQGSPLLNELLARL 160
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775 269 TLMATTSQ-FP---KLLVYSAHDTTLVALQMALNVYN---------------GKQAPYASCHIFELYQ-EDNGNFSVEMY 328
Cdd:cd07061   161 TNGPSGSQtFPldrKLYLYFSHDTTILPLLTALGLFDfaeplppdflrgfseSDYPPFAARLVFELWRcPGDGESYVRVL 240

                  ..
gi 1264203775 329 FR 330
Cdd:cd07061   241 VN 242
 
Name Accession Description Interval E-value
HP_HAP_like cd07061
Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His ...
33-330 1.13e-47

Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction; Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been shown in mouse models to suppress pain by functioning as an ecto-5prime-nucleotidase. In vivo it dephosphorylates extracellular adenosine monophosphate (AMP) generating adenosine,and leading to the activation of A1-adenosine receptors in dorsal spinal cord.


Pssm-ID: 132717 [Multi-domain]  Cd Length: 242  Bit Score: 163.70  E-value: 1.13e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775  33 LRFVTLLYRHGDRSPvktypkdpyqeekwpqgfGQLTKEGMLQHWELGQALRQRY-HGFLNTSYHRQEVYVRSTDFDRTL 111
Cdd:cd07061     2 LEQVQVLSRHGDRYP------------------GELTPFGRQQAFELGRYFRQRYgELLLLHSYNRSDLYIRSSDSQRTL 63
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775 112 MSAEANLAGLFPPNEvqhfnpnisWQPIPVHTVPITEDRllkfplgpcpryeqlqnetrqtpeyqnrsiqnaqflnmvan 191
Cdd:cd07061    64 QSAQAFLAGLFPPDG---------WQPIAVHTIPEEEDD----------------------------------------- 93
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775 192 etgltnvtletIWNVYDTLFCEQTHGLLLPPWA---SPQTVQRLSQLKDFSFLFLFGIHEQVqkARLQGGVLLAQILKNL 268
Cdd:cd07061    94 -----------VSNLFDLCAYETVAKGYSAPFCdlfTEEEWVKLEYLNDLKFYYGYGPGNPL--ARAQGSPLLNELLARL 160
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775 269 TLMATTSQ-FP---KLLVYSAHDTTLVALQMALNVYN---------------GKQAPYASCHIFELYQ-EDNGNFSVEMY 328
Cdd:cd07061   161 TNGPSGSQtFPldrKLYLYFSHDTTILPLLTALGLFDfaeplppdflrgfseSDYPPFAARLVFELWRcPGDGESYVRVL 240

                  ..
gi 1264203775 329 FR 330
Cdd:cd07061   241 VN 242
His_Phos_2 pfam00328
Histidine phosphatase superfamily (branch 2); The histidine phosphatase superfamily is so ...
33-330 1.49e-47

Histidine phosphatase superfamily (branch 2); The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches.The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated.


Pssm-ID: 395259 [Multi-domain]  Cd Length: 356  Bit Score: 166.81  E-value: 1.49e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775  33 LRFVTLLYRHGDRSPVKTYPKD-------------------------PYQEEKWPQGFGQLTKEGMLQHWELGQALRQRY 87
Cdd:pfam00328   2 LEQVQVVSRHGDRTPTQKFKKSyeslifkilslagslegklsfpgdyRYFKLQYTLGWGGLTPSGRVQAENLGRYFRQRY 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775  88 H-GFLNTSYHRQEVYVRSTDFDRTLMSAEANLAGLFPPNEVQHFNPNISWQPIPVHTVP---ITEDRLLKFPLGPCPRYE 163
Cdd:pfam00328  82 VgGLLRDGYNAKDIYIRASSEGRVIASAQAFAEGLFGPEGEDVDKDLLDDSNVAKVTIDedkKALANNLTAGYCSCPAFE 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775 164 Q-LQNETRQTPEYqnrSIQNAQFLNMVANE-----TGLTNVTLETIWNVYDTLFCEQ--THGLLLPPWASPQTVQRLSQL 235
Cdd:pfam00328 162 WpLQLLKQVDEAL---DYYLPVFLEPIAKRleqlcPGETNLTADDVWALLFLCFFETnkADLSPFCDLFTEEDALHNEYL 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775 236 KDFSFLF-LFGIHEQVqkARLQGGVLLAQILKNLTL------MATTSQFPKLLVYSAHDTTLVALQMALNVYNG------ 302
Cdd:pfam00328 239 LDLEEYYgLAGIGNEL--KKTIGGPLLNELLARLTNdlvctqEATFPLDAKLYLYFTHDTTIYSLLSALGLFDDlpplss 316
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1264203775 303 ----------KQAPYASCHIFELYQ--EDNGNFSVEMYFR 330
Cdd:pfam00328 317 lrvldgysasGEVPYGARLVFELYEcsSEKDSRYVRLLLN 356
PRK10172 PRK10172
AppA family phytase/histidine-type acid phosphatase;
8-354 1.43e-06

AppA family phytase/histidine-type acid phosphatase;


Pssm-ID: 182283  Cd Length: 436  Bit Score: 50.13  E-value: 1.43e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775   8 WSQAALLQFLLGMCLTVMPPIQA--RSLRFVTLLYRHGDRSPVKTYP----KDPYQEEKWPQGFGQLTKEGMLQHWELGQ 81
Cdd:PRK10172    7 AILIPFLSLLIPLTPQSAFAQSEpeLKLESVVIVSRHGVRAPTKATQlmqdVTPDAWPQWPVKLGWLTPRGGELVTLLGH 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775  82 ALRQRY--HGFLNTSY--HRQEVYVRsTDFD-RTLMSAEANLAGLFPPNEVQ-HFNPNISwQPIPV-HTV---------P 145
Cdd:PRK10172   87 YQRQRLvaDGLLAAKGcpQPGQVAAI-ADVDqRTRKTGEAFLAGLAPDCAITvHTQADTS-KPDPLfNPLktgvcqldnA 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775 146 ITEDRLLKFPLGPCPRYEQlQNET-----------RQTPEYQNRSIQN--AQFLNMVANETGLT--NVTLETIWNVYDTL 210
Cdd:PRK10172  165 NVTDAILSRAGGSIADFTQ-RYQTafrelervlnfAQSPLCLSREKQDksCSLTQALPSELKVSadNVSLSGAVSLASML 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775 211 ----FCEQTHGLLLPPW---ASPQTVQRLSQLKDFSFLFLfgiheqvQK----ARLQGGVLLAQILKNLTLMATTSQFP- 278
Cdd:PRK10172  244 teifLLQQAQGMPEPAWgriTDSHQWNTLLSLHNAQFYLL-------QRtpevARHRATPLLDLIMTALTPHPPQKQAYg 316
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775 279 -----KLLVYSAHDTTLVALQMALNVY-----NGKQAPYASCHIFELYQEDNGN---FSVEMYF------RNDSK---KA 336
Cdd:PRK10172  317 itlptSVLFIAGHDTNLANLGGALELNwtlpgQPDNTPPGGELVFERWRRLSDNsqwIQVSLVYqtlqqmRDKTPlslNT 396
                         410       420
                  ....*....|....*....|....*.
gi 1264203775 337 P---WPLILPGCPHR-----CPLQDF 354
Cdd:PRK10172  397 PpgeVKLTLAGCEERnaqgmCSLAGF 422
 
Name Accession Description Interval E-value
HP_HAP_like cd07061
Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His ...
33-330 1.13e-47

Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction; Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been shown in mouse models to suppress pain by functioning as an ecto-5prime-nucleotidase. In vivo it dephosphorylates extracellular adenosine monophosphate (AMP) generating adenosine,and leading to the activation of A1-adenosine receptors in dorsal spinal cord.


Pssm-ID: 132717 [Multi-domain]  Cd Length: 242  Bit Score: 163.70  E-value: 1.13e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775  33 LRFVTLLYRHGDRSPvktypkdpyqeekwpqgfGQLTKEGMLQHWELGQALRQRY-HGFLNTSYHRQEVYVRSTDFDRTL 111
Cdd:cd07061     2 LEQVQVLSRHGDRYP------------------GELTPFGRQQAFELGRYFRQRYgELLLLHSYNRSDLYIRSSDSQRTL 63
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775 112 MSAEANLAGLFPPNEvqhfnpnisWQPIPVHTVPITEDRllkfplgpcpryeqlqnetrqtpeyqnrsiqnaqflnmvan 191
Cdd:cd07061    64 QSAQAFLAGLFPPDG---------WQPIAVHTIPEEEDD----------------------------------------- 93
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775 192 etgltnvtletIWNVYDTLFCEQTHGLLLPPWA---SPQTVQRLSQLKDFSFLFLFGIHEQVqkARLQGGVLLAQILKNL 268
Cdd:cd07061    94 -----------VSNLFDLCAYETVAKGYSAPFCdlfTEEEWVKLEYLNDLKFYYGYGPGNPL--ARAQGSPLLNELLARL 160
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775 269 TLMATTSQ-FP---KLLVYSAHDTTLVALQMALNVYN---------------GKQAPYASCHIFELYQ-EDNGNFSVEMY 328
Cdd:cd07061   161 TNGPSGSQtFPldrKLYLYFSHDTTILPLLTALGLFDfaeplppdflrgfseSDYPPFAARLVFELWRcPGDGESYVRVL 240

                  ..
gi 1264203775 329 FR 330
Cdd:cd07061   241 VN 242
His_Phos_2 pfam00328
Histidine phosphatase superfamily (branch 2); The histidine phosphatase superfamily is so ...
33-330 1.49e-47

Histidine phosphatase superfamily (branch 2); The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches.The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated.


Pssm-ID: 395259 [Multi-domain]  Cd Length: 356  Bit Score: 166.81  E-value: 1.49e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775  33 LRFVTLLYRHGDRSPVKTYPKD-------------------------PYQEEKWPQGFGQLTKEGMLQHWELGQALRQRY 87
Cdd:pfam00328   2 LEQVQVVSRHGDRTPTQKFKKSyeslifkilslagslegklsfpgdyRYFKLQYTLGWGGLTPSGRVQAENLGRYFRQRY 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775  88 H-GFLNTSYHRQEVYVRSTDFDRTLMSAEANLAGLFPPNEVQHFNPNISWQPIPVHTVP---ITEDRLLKFPLGPCPRYE 163
Cdd:pfam00328  82 VgGLLRDGYNAKDIYIRASSEGRVIASAQAFAEGLFGPEGEDVDKDLLDDSNVAKVTIDedkKALANNLTAGYCSCPAFE 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775 164 Q-LQNETRQTPEYqnrSIQNAQFLNMVANE-----TGLTNVTLETIWNVYDTLFCEQ--THGLLLPPWASPQTVQRLSQL 235
Cdd:pfam00328 162 WpLQLLKQVDEAL---DYYLPVFLEPIAKRleqlcPGETNLTADDVWALLFLCFFETnkADLSPFCDLFTEEDALHNEYL 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775 236 KDFSFLF-LFGIHEQVqkARLQGGVLLAQILKNLTL------MATTSQFPKLLVYSAHDTTLVALQMALNVYNG------ 302
Cdd:pfam00328 239 LDLEEYYgLAGIGNEL--KKTIGGPLLNELLARLTNdlvctqEATFPLDAKLYLYFTHDTTIYSLLSALGLFDDlpplss 316
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1264203775 303 ----------KQAPYASCHIFELYQ--EDNGNFSVEMYFR 330
Cdd:pfam00328 317 lrvldgysasGEVPYGARLVFELYEcsSEKDSRYVRLLLN 356
PRK10172 PRK10172
AppA family phytase/histidine-type acid phosphatase;
8-354 1.43e-06

AppA family phytase/histidine-type acid phosphatase;


Pssm-ID: 182283  Cd Length: 436  Bit Score: 50.13  E-value: 1.43e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775   8 WSQAALLQFLLGMCLTVMPPIQA--RSLRFVTLLYRHGDRSPVKTYP----KDPYQEEKWPQGFGQLTKEGMLQHWELGQ 81
Cdd:PRK10172    7 AILIPFLSLLIPLTPQSAFAQSEpeLKLESVVIVSRHGVRAPTKATQlmqdVTPDAWPQWPVKLGWLTPRGGELVTLLGH 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775  82 ALRQRY--HGFLNTSY--HRQEVYVRsTDFD-RTLMSAEANLAGLFPPNEVQ-HFNPNISwQPIPV-HTV---------P 145
Cdd:PRK10172   87 YQRQRLvaDGLLAAKGcpQPGQVAAI-ADVDqRTRKTGEAFLAGLAPDCAITvHTQADTS-KPDPLfNPLktgvcqldnA 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775 146 ITEDRLLKFPLGPCPRYEQlQNET-----------RQTPEYQNRSIQN--AQFLNMVANETGLT--NVTLETIWNVYDTL 210
Cdd:PRK10172  165 NVTDAILSRAGGSIADFTQ-RYQTafrelervlnfAQSPLCLSREKQDksCSLTQALPSELKVSadNVSLSGAVSLASML 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775 211 ----FCEQTHGLLLPPW---ASPQTVQRLSQLKDFSFLFLfgiheqvQK----ARLQGGVLLAQILKNLTLMATTSQFP- 278
Cdd:PRK10172  244 teifLLQQAQGMPEPAWgriTDSHQWNTLLSLHNAQFYLL-------QRtpevARHRATPLLDLIMTALTPHPPQKQAYg 316
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1264203775 279 -----KLLVYSAHDTTLVALQMALNVY-----NGKQAPYASCHIFELYQEDNGN---FSVEMYF------RNDSK---KA 336
Cdd:PRK10172  317 itlptSVLFIAGHDTNLANLGGALELNwtlpgQPDNTPPGGELVFERWRRLSDNsqwIQVSLVYqtlqqmRDKTPlslNT 396
                         410       420
                  ....*....|....*....|....*.
gi 1264203775 337 P---WPLILPGCPHR-----CPLQDF 354
Cdd:PRK10172  397 PpgeVKLTLAGCEERnaqgmCSLAGF 422
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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