NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1184495015|ref|NP_001337688|]
View 

AFG2-interacting ribosome maturation factor isoform 2 [Homo sapiens]

Protein Classification

CK2S domain-containing protein( domain architecture ID 10633225)

CK2S domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CK2S pfam15011
Casein Kinase 2 substrate; It is suggested that CK2S (C10orf109) is important in the ...
 75-236 4.35e-66

Casein Kinase 2 substrate; It is suggested that CK2S (C10orf109) is important in the regulation of cancer cell proliferation. Studies have indicated that CK2S is the downstream target of a protein kinase, casein kinase 2 (CK2), which is upregulated in cancer cells. CK2S has been found to be upregulated in cancer cells. The precise mechanism of CK2 targetting CK2S is not well characterized. It is found to be localized in the nucleus and cytoplasm. This family of proteins is found in eukaryotes. Proteins in this family are typically between 160 and 221 amino acids in length. There is a single completely conserved residue P that may be functionally important.


:

Pssm-ID: 464443  Cd Length: 161  Bit Score: 202.90  E-value: 4.35e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184495015  75 ALKKCFPVVEEQQGLWQSALRDCQPLLSSLSNLAEQLQAAQNLRFEDVPaLRAFPDLKERLRRKQLVAGDIVLDKLGERL 154
Cdd:pfam15011   1 KLRKKFRKVEEQMDRWDSLLSRCLSLLSSLSNLAEQLQALQNVKLYGTP-LRCFPDLQERLRGKQMEALETVLLKLREKL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184495015 155 AILLKVRDMVSSHVERVFQIYEQHADTVGIDAVLQPSAVSPSVADMLEWLQDIERHYRKSYLKRKYLLSSIQWGDLANIQ 234
Cdd:pfam15011  80 EEFQKVRDSLSKQVRDVFQLYEQHADELGLKALQQRSGVSPSLADMLEWLQDIERMYRSEYLLKKSLLSTLTYSDLSDLQ 159


                  ..
gi 1184495015 235 AL 236
Cdd:pfam15011 160 AL 161
 
Name Accession Description Interval E-value
CK2S pfam15011
Casein Kinase 2 substrate; It is suggested that CK2S (C10orf109) is important in the ...
 75-236 4.35e-66

Casein Kinase 2 substrate; It is suggested that CK2S (C10orf109) is important in the regulation of cancer cell proliferation. Studies have indicated that CK2S is the downstream target of a protein kinase, casein kinase 2 (CK2), which is upregulated in cancer cells. CK2S has been found to be upregulated in cancer cells. The precise mechanism of CK2 targetting CK2S is not well characterized. It is found to be localized in the nucleus and cytoplasm. This family of proteins is found in eukaryotes. Proteins in this family are typically between 160 and 221 amino acids in length. There is a single completely conserved residue P that may be functionally important.


Pssm-ID: 464443  Cd Length: 161  Bit Score: 202.90  E-value: 4.35e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184495015  75 ALKKCFPVVEEQQGLWQSALRDCQPLLSSLSNLAEQLQAAQNLRFEDVPaLRAFPDLKERLRRKQLVAGDIVLDKLGERL 154
Cdd:pfam15011   1 KLRKKFRKVEEQMDRWDSLLSRCLSLLSSLSNLAEQLQALQNVKLYGTP-LRCFPDLQERLRGKQMEALETVLLKLREKL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184495015 155 AILLKVRDMVSSHVERVFQIYEQHADTVGIDAVLQPSAVSPSVADMLEWLQDIERHYRKSYLKRKYLLSSIQWGDLANIQ 234
Cdd:pfam15011  80 EEFQKVRDSLSKQVRDVFQLYEQHADELGLKALQQRSGVSPSLADMLEWLQDIERMYRSEYLLKKSLLSTLTYSDLSDLQ 159


                  ..
gi 1184495015 235 AL 236
Cdd:pfam15011 160 AL 161
 
Name Accession Description Interval E-value
CK2S pfam15011
Casein Kinase 2 substrate; It is suggested that CK2S (C10orf109) is important in the ...
 75-236 4.35e-66

Casein Kinase 2 substrate; It is suggested that CK2S (C10orf109) is important in the regulation of cancer cell proliferation. Studies have indicated that CK2S is the downstream target of a protein kinase, casein kinase 2 (CK2), which is upregulated in cancer cells. CK2S has been found to be upregulated in cancer cells. The precise mechanism of CK2 targetting CK2S is not well characterized. It is found to be localized in the nucleus and cytoplasm. This family of proteins is found in eukaryotes. Proteins in this family are typically between 160 and 221 amino acids in length. There is a single completely conserved residue P that may be functionally important.


Pssm-ID: 464443  Cd Length: 161  Bit Score: 202.90  E-value: 4.35e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184495015  75 ALKKCFPVVEEQQGLWQSALRDCQPLLSSLSNLAEQLQAAQNLRFEDVPaLRAFPDLKERLRRKQLVAGDIVLDKLGERL 154
Cdd:pfam15011   1 KLRKKFRKVEEQMDRWDSLLSRCLSLLSSLSNLAEQLQALQNVKLYGTP-LRCFPDLQERLRGKQMEALETVLLKLREKL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184495015 155 AILLKVRDMVSSHVERVFQIYEQHADTVGIDAVLQPSAVSPSVADMLEWLQDIERHYRKSYLKRKYLLSSIQWGDLANIQ 234
Cdd:pfam15011  80 EEFQKVRDSLSKQVRDVFQLYEQHADELGLKALQQRSGVSPSLADMLEWLQDIERMYRSEYLLKKSLLSTLTYSDLSDLQ 159


                  ..
gi 1184495015 235 AL 236
Cdd:pfam15011 160 AL 161
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH