NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|576067787|ref|NP_001276582|]
View 

protein kinase C-binding protein NELL2 precursor [Mus musculus]

Protein Classification

LamG and EGF_CA domain-containing protein( domain architecture ID 11259343)

protein containing domains LamG, EGF_CA, and VWC

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TSPN smart00210
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ...
 32-217 3.35e-52

Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin


:

Pssm-ID: 214560  Cd Length: 184  Bit Score: 179.86  E-value: 3.35e-52
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067787    32 QIDVLTELELGESTDGVRQVPGLHNGTKAFLFQesprSIKASTATAERFFQKlRNKHEFTILVTLKQIHLNSGVILSIHH 111
Cdd:smart00210   1 GQDLLQVFDLPSLSFAIRQVVGPEPGSPAYRLG----DPALVPQPTRDLFPS-GLPEDFSLLTTFRQTPKSRGVLFAIYD 75

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067787   112 -LDHRYLELESSGHRNEIRLHYRSGTHRPHTEVFP-YILADAKWHKLSLAFSASHLILHIDCNKIYERVVEMPS--TDLP 187
Cdd:smart00210  76 aQNVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFRnLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPGqpPIDT 155

                          170       180       190
                   ....*....|....*....|....*....|
gi 576067787   188 LGTTFWLGQRNNaHGYFKGIMQDVHVLVMP 217
Cdd:smart00210 156 DGIEVRGAQAAD-RKPFQGDLQQLKIVCDP 184
EGF_3 pfam12947
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes ...
 489-524 4.36e-10

EGF domain; This family includes a variety of EGF-like domain homologs. This family includes the C-terminal domain of the malaria parasite MSP1 protein.


:

Pssm-ID: 463759 [Multi-domain]  Cd Length: 36  Bit Score: 55.30  E-value: 4.36e-10
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 576067787  489 CLTNQHNCDENALCFNTVGGHNCVCKPGYTGNGTTC 524
Cdd:pfam12947   1 CSDNNGGCHPNATCTNTGGSFTCTCNDGYTGDGVTC 36
EGF_CA pfam07645
Calcium-binding EGF domain;
605-636 2.07e-08

Calcium-binding EGF domain;


:

Pssm-ID: 429571  Cd Length: 32  Bit Score: 50.31  E-value: 2.07e-08
                          10        20        30
                  ....*....|....*....|....*....|..
gi 576067787  605 DIDECGTGRHSCTNDTICFNLDGGYDCRCPHG 636
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECRCPDG 32
VWC super family cl17735
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ...
 277-333 4.42e-07

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.


The actual alignment was detected with superfamily member pfam00093:

Pssm-ID: 450195  Cd Length: 57  Bit Score: 47.42  E-value: 4.42e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 576067787  277 CTVKGTTYRESESWT-DGCKNCTCLNGTIQCETLVCPAPDCPPKSApAYVDGKCCKEC 333
Cdd:pfam00093   1 CVQNGVVYENGETWKpDLCTICTCDDGKVLCDKIICPPLDCPNPRL-EIPPGECCPVC 57
EGF_CA pfam07645
Calcium-binding EGF domain;
443-474 1.54e-06

Calcium-binding EGF domain;


:

Pssm-ID: 429571  Cd Length: 32  Bit Score: 45.31  E-value: 1.54e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 576067787  443 DIDECAEGRHYCRENTMCVNTPGSFMCICKTG 474
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECRCPDG 32
VWC super family cl17735
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ...
 708-758 6.51e-06

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.


The actual alignment was detected with superfamily member pfam00093:

Pssm-ID: 450195  Cd Length: 57  Bit Score: 43.95  E-value: 6.51e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 576067787  708 GETVYNSGDTWVQD-CRQCRCLQGEVDCWPLACPEVECE--FSVLPENECCPRC 758
Cdd:pfam00093   4 NGVVYENGETWKPDlCTICTCDDGKVLCDKIICPPLDCPnpRLEIPPGECCPVC 57
EGF_CA smart00179
Calcium-binding EGF-like domain;
558-592 4.27e-05

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 41.08  E-value: 4.27e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 576067787   558 DIDECSEGFVqCDSRANCINLPGWYHCECRDGYHD 592
Cdd:smart00179   1 DIDECASGNP-CQNGGTCVNTVGSYRCECPPGYTD 34
 
Name Accession Description Interval E-value
TSPN smart00210
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ...
 32-217 3.35e-52

Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin


Pssm-ID: 214560  Cd Length: 184  Bit Score: 179.86  E-value: 3.35e-52
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067787    32 QIDVLTELELGESTDGVRQVPGLHNGTKAFLFQesprSIKASTATAERFFQKlRNKHEFTILVTLKQIHLNSGVILSIHH 111
Cdd:smart00210   1 GQDLLQVFDLPSLSFAIRQVVGPEPGSPAYRLG----DPALVPQPTRDLFPS-GLPEDFSLLTTFRQTPKSRGVLFAIYD 75

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067787   112 -LDHRYLELESSGHRNEIRLHYRSGTHRPHTEVFP-YILADAKWHKLSLAFSASHLILHIDCNKIYERVVEMPS--TDLP 187
Cdd:smart00210  76 aQNVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFRnLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPGqpPIDT 155

                          170       180       190
                   ....*....|....*....|....*....|
gi 576067787   188 LGTTFWLGQRNNaHGYFKGIMQDVHVLVMP 217
Cdd:smart00210 156 DGIEVRGAQAAD-RKPFQGDLQQLKIVCDP 184
EGF_3 pfam12947
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes ...
 489-524 4.36e-10

EGF domain; This family includes a variety of EGF-like domain homologs. This family includes the C-terminal domain of the malaria parasite MSP1 protein.


Pssm-ID: 463759 [Multi-domain]  Cd Length: 36  Bit Score: 55.30  E-value: 4.36e-10
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 576067787  489 CLTNQHNCDENALCFNTVGGHNCVCKPGYTGNGTTC 524
Cdd:pfam12947   1 CSDNNGGCHPNATCTNTGGSFTCTCNDGYTGDGVTC 36
LamG cd00110
Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have ...
 103-213 1.74e-09

Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.


Pssm-ID: 238058 [Multi-domain]  Cd Length: 151  Bit Score: 57.04  E-value: 1.74e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067787 103 SGVILSIHHLD-HRYLELE-SSGHrneIRLHYRSGTHRPHTEVfPYILADAKWHKLSLAFSASHLILHIDCNKIYERVVE 180
Cdd:cd00110   34 NGLLLYAGSQNgGDFLALElEDGR---LVLRYDLGSGSLVLSS-KTPLNDGQWHSVSVERNGRSVTLSVDGERVVESGSP 109

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 576067787 181 MPSTDLPLGTTFWLGQRNNAHG--------YFKGIMQDVHV 213
Cdd:cd00110  110 GGSALLNLDGPLYLGGLPEDLKspglpvspGFVGCIRDLKV 150
EGF_CA pfam07645
Calcium-binding EGF domain;
605-636 2.07e-08

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 50.31  E-value: 2.07e-08
                          10        20        30
                  ....*....|....*....|....*....|..
gi 576067787  605 DIDECGTGRHSCTNDTICFNLDGGYDCRCPHG 636
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECRCPDG 32
Laminin_G_2 pfam02210
Laminin G domain; This family includes the Thrombospondin N-terminal-like domain, a Laminin G ...
 103-213 5.16e-08

Laminin G domain; This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily.


Pssm-ID: 460494 [Multi-domain]  Cd Length: 126  Bit Score: 52.04  E-value: 5.16e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067787  103 SGVILSIHHLDHRYLELE-SSGHrneIRLHYRSGTHRPHTEVFPYILADAKWHKLSLAFSASHLILHIDCNKIYERVVEM 181
Cdd:pfam02210   7 NGLLLYAGGGGSDFLALElVNGR---LVLRYDLGSGPESLLSSGKNLNDGQWHSVRVERNGNTLTLSVDGQTVVSSLPPG 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 576067787  182 PSTDLPLGTTFWLG--------QRNNAHGYFKGIMQDVHV 213
Cdd:pfam02210  84 ESLLLNLNGPLYLGglppllllPALPVRAGFVGCIRDVRV 123
VWC pfam00093
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ...
 277-333 4.42e-07

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.


Pssm-ID: 278520  Cd Length: 57  Bit Score: 47.42  E-value: 4.42e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 576067787  277 CTVKGTTYRESESWT-DGCKNCTCLNGTIQCETLVCPAPDCPPKSApAYVDGKCCKEC 333
Cdd:pfam00093   1 CVQNGVVYENGETWKpDLCTICTCDDGKVLCDKIICPPLDCPNPRL-EIPPGECCPVC 57
EGF_CA pfam07645
Calcium-binding EGF domain;
443-474 1.54e-06

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 45.31  E-value: 1.54e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 576067787  443 DIDECAEGRHYCRENTMCVNTPGSFMCICKTG 474
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECRCPDG 32
VWC pfam00093
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ...
 708-758 6.51e-06

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.


Pssm-ID: 278520  Cd Length: 57  Bit Score: 43.95  E-value: 6.51e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 576067787  708 GETVYNSGDTWVQD-CRQCRCLQGEVDCWPLACPEVECE--FSVLPENECCPRC 758
Cdd:pfam00093   4 NGVVYENGETWKPDlCTICTCDDGKVLCDKIICPPLDCPnpRLEIPPGECCPVC 57
VWC smart00214
von Willebrand factor (vWF) type C domain;
710-758 1.06e-05

von Willebrand factor (vWF) type C domain;


Pssm-ID: 214564  Cd Length: 59  Bit Score: 43.66  E-value: 1.06e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 576067787   710 TVYNSGDTWVQD-CRQCRCLQGE-VDCWPLACPEV-ECE--FSVLPENECCPRC 758
Cdd:smart00214   6 RVYNDGETWKPDpCQICTCLDGTtVLCDPVECPPPpDCPnpERVKPPGECCPRC 59
EGF_CA smart00179
Calcium-binding EGF-like domain;
443-475 1.51e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 42.62  E-value: 1.51e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 576067787   443 DIDECAEGrHYCRENTMCVNTPGSFMCICKTGY 475
Cdd:smart00179   1 DIDECASG-NPCQNGGTCVNTVGSYRCECPPGY 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
558-592 4.27e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 41.08  E-value: 4.27e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 576067787   558 DIDECSEGFVqCDSRANCINLPGWYHCECRDGYHD 592
Cdd:smart00179   1 DIDECASGNP-CQNGGTCVNTVGSYRCECPPGYTD 34
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 438-480 4.68e-05

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 45.45  E-value: 4.68e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 576067787 438 NAYCEDIDECAEGRHYCREntMCVNTPGSFMCICKTGYIRIDD 480
Cdd:cd01475  181 GKICVVPDLCATLSHVCQQ--VCISTPGSYLCACTEGYALLED 221
EGF_CA smart00179
Calcium-binding EGF-like domain;
487-525 1.61e-04

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 39.54  E-value: 1.61e-04
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 576067787   487 DECLTNqHNCDENALCFNTVGGHNCVCKPGYTgNGTTCK 525
Cdd:smart00179   3 DECASG-NPCQNGGTCVNTVGSYRCECPPGYT-DGRNCE 39
VWC smart00214
von Willebrand factor (vWF) type C domain;
277-333 3.76e-04

von Willebrand factor (vWF) type C domain;


Pssm-ID: 214564  Cd Length: 59  Bit Score: 39.04  E-value: 3.76e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067787   277 CTVKGTTYRESESWTDGCKN-CTCLNG-TIQCETLVCP-APDCPPKSaPAYVDGKCCKEC 333
Cdd:smart00214   1 CVHNGRVYNDGETWKPDPCQiCTCLDGtTVLCDPVECPpPPDCPNPE-RVKPPGECCPRC 59
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 558-591 3.76e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 38.39  E-value: 3.76e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 576067787 558 DIDECSEGFVqCDSRANCINLPGWYHCECRDGYH 591
Cdd:cd00054    1 DIDECASGNP-CQNGGTCVNTVGSYRCSCPPGYT 33
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 487-519 5.01e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 38.39  E-value: 5.01e-04
                         10        20        30
                 ....*....|....*....|....*....|...
gi 576067787 487 DECLTNqHNCDENALCFNTVGGHNCVCKPGYTG 519
Cdd:cd00054    3 DECASG-NPCQNGGTCVNTVGSYRCSCPPGYTG 34
EGF_CA smart00179
Calcium-binding EGF-like domain;
605-644 2.16e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 36.46  E-value: 2.16e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 576067787   605 DIDECGTGrHSCTNDTICFNLDGGYDCRCPHGKNCTGDCV 644
Cdd:smart00179   1 DIDECASG-NPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 605-636 7.89e-03

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 34.92  E-value: 7.89e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 576067787 605 DIDECGTGrHSCTNDTICFNLDGGYDCRCPHG 636
Cdd:cd00054    1 DIDECASG-NPCQNGGTCVNTVGSYRCSCPPG 31
 
Name Accession Description Interval E-value
TSPN smart00210
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ...
 32-217 3.35e-52

Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin


Pssm-ID: 214560  Cd Length: 184  Bit Score: 179.86  E-value: 3.35e-52
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067787    32 QIDVLTELELGESTDGVRQVPGLHNGTKAFLFQesprSIKASTATAERFFQKlRNKHEFTILVTLKQIHLNSGVILSIHH 111
Cdd:smart00210   1 GQDLLQVFDLPSLSFAIRQVVGPEPGSPAYRLG----DPALVPQPTRDLFPS-GLPEDFSLLTTFRQTPKSRGVLFAIYD 75

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067787   112 -LDHRYLELESSGHRNEIRLHYRSGTHRPHTEVFP-YILADAKWHKLSLAFSASHLILHIDCNKIYERVVEMPS--TDLP 187
Cdd:smart00210  76 aQNVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFRnLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPGqpPIDT 155

                          170       180       190
                   ....*....|....*....|....*....|
gi 576067787   188 LGTTFWLGQRNNaHGYFKGIMQDVHVLVMP 217
Cdd:smart00210 156 DGIEVRGAQAAD-RKPFQGDLQQLKIVCDP 184
LamG smart00282
Laminin G domain;
103-213 2.58e-11

Laminin G domain;


Pssm-ID: 214598 [Multi-domain]  Cd Length: 132  Bit Score: 61.97  E-value: 2.58e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067787   103 SGVILSIHHLD-HRYLELESS-GHrneIRLHYRSGTHRPHTEVFPYILADAKWHKLSLAFSASHLILHID-CNKIYERVV 179
Cdd:smart00282  12 NGLLLYAGSKGgGDYLALELRdGR---LVLRYDLGSGPARLTSDPTPLNDGQWHRVAVERNGRSVTLSVDgGNRVSGESP 88

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 576067787   180 EmPSTDLPLGTTFWLGQRNNAHG--------YFKGIMQDVHV 213
Cdd:smart00282  89 G-GLTILNLDGPLYLGGLPEDLKlpplpvtpGFRGCIRNLKV 129
EGF_3 pfam12947
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes ...
 489-524 4.36e-10

EGF domain; This family includes a variety of EGF-like domain homologs. This family includes the C-terminal domain of the malaria parasite MSP1 protein.


Pssm-ID: 463759 [Multi-domain]  Cd Length: 36  Bit Score: 55.30  E-value: 4.36e-10
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 576067787  489 CLTNQHNCDENALCFNTVGGHNCVCKPGYTGNGTTC 524
Cdd:pfam12947   1 CSDNNGGCHPNATCTNTGGSFTCTCNDGYTGDGVTC 36
LamG cd00110
Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have ...
 103-213 1.74e-09

Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.


Pssm-ID: 238058 [Multi-domain]  Cd Length: 151  Bit Score: 57.04  E-value: 1.74e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067787 103 SGVILSIHHLD-HRYLELE-SSGHrneIRLHYRSGTHRPHTEVfPYILADAKWHKLSLAFSASHLILHIDCNKIYERVVE 180
Cdd:cd00110   34 NGLLLYAGSQNgGDFLALElEDGR---LVLRYDLGSGSLVLSS-KTPLNDGQWHSVSVERNGRSVTLSVDGERVVESGSP 109

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 576067787 181 MPSTDLPLGTTFWLGQRNNAHG--------YFKGIMQDVHV 213
Cdd:cd00110  110 GGSALLNLDGPLYLGGLPEDLKspglpvspGFVGCIRDLKV 150
EGF_CA pfam07645
Calcium-binding EGF domain;
605-636 2.07e-08

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 50.31  E-value: 2.07e-08
                          10        20        30
                  ....*....|....*....|....*....|..
gi 576067787  605 DIDECGTGRHSCTNDTICFNLDGGYDCRCPHG 636
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECRCPDG 32
Laminin_G_2 pfam02210
Laminin G domain; This family includes the Thrombospondin N-terminal-like domain, a Laminin G ...
 103-213 5.16e-08

Laminin G domain; This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily.


Pssm-ID: 460494 [Multi-domain]  Cd Length: 126  Bit Score: 52.04  E-value: 5.16e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067787  103 SGVILSIHHLDHRYLELE-SSGHrneIRLHYRSGTHRPHTEVFPYILADAKWHKLSLAFSASHLILHIDCNKIYERVVEM 181
Cdd:pfam02210   7 NGLLLYAGGGGSDFLALElVNGR---LVLRYDLGSGPESLLSSGKNLNDGQWHSVRVERNGNTLTLSVDGQTVVSSLPPG 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 576067787  182 PSTDLPLGTTFWLG--------QRNNAHGYFKGIMQDVHV 213
Cdd:pfam02210  84 ESLLLNLNGPLYLGglppllllPALPVRAGFVGCIRDVRV 123
VWC pfam00093
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ...
 277-333 4.42e-07

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.


Pssm-ID: 278520  Cd Length: 57  Bit Score: 47.42  E-value: 4.42e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 576067787  277 CTVKGTTYRESESWT-DGCKNCTCLNGTIQCETLVCPAPDCPPKSApAYVDGKCCKEC 333
Cdd:pfam00093   1 CVQNGVVYENGETWKpDLCTICTCDDGKVLCDKIICPPLDCPNPRL-EIPPGECCPVC 57
EGF_CA pfam07645
Calcium-binding EGF domain;
443-474 1.54e-06

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 45.31  E-value: 1.54e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 576067787  443 DIDECAEGRHYCRENTMCVNTPGSFMCICKTG 474
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECRCPDG 32
EGF_CA pfam07645
Calcium-binding EGF domain;
487-516 2.54e-06

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 44.54  E-value: 2.54e-06
                          10        20        30
                  ....*....|....*....|....*....|
gi 576067787  487 DECLTNQHNCDENALCFNTVGGHNCVCKPG 516
Cdd:pfam07645   3 DECATGTHNCPANTVCVNTIGSFECRCPDG 32
Laminin_G_1 pfam00054
Laminin G domain;
103-219 4.49e-06

Laminin G domain;


Pssm-ID: 395008 [Multi-domain]  Cd Length: 131  Bit Score: 46.93  E-value: 4.49e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067787  103 SGVILSIHHLDHR-YLELESsgHRNEIRLHYRSGTHRPHTeVFPYILADAKWHKLSLAFSASHLILHIDcnKIYERVVEM 181
Cdd:pfam00054   7 SGLLLYNGTQTERdFLALEL--RDGRLEVSYDLGSGAAVV-RSGDKLNDGKWHSVELERNGRSGTLSVD--GEARPTGES 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 576067787  182 PS---TDLPLGTTFWLG--------QRNNAHG-YFKGIMQDVHVLVMPQG 219
Cdd:pfam00054  82 PLgatTDLDVDGPLYVGglpslgvkKRRLAISpSFDGCIRDVIVNGKPLD 131
VWC pfam00093
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ...
 708-758 6.51e-06

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.


Pssm-ID: 278520  Cd Length: 57  Bit Score: 43.95  E-value: 6.51e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 576067787  708 GETVYNSGDTWVQD-CRQCRCLQGEVDCWPLACPEVECE--FSVLPENECCPRC 758
Cdd:pfam00093   4 NGVVYENGETWKPDlCTICTCDDGKVLCDKIICPPLDCPnpRLEIPPGECCPVC 57
VWC smart00214
von Willebrand factor (vWF) type C domain;
710-758 1.06e-05

von Willebrand factor (vWF) type C domain;


Pssm-ID: 214564  Cd Length: 59  Bit Score: 43.66  E-value: 1.06e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 576067787   710 TVYNSGDTWVQD-CRQCRCLQGE-VDCWPLACPEV-ECE--FSVLPENECCPRC 758
Cdd:smart00214   6 RVYNDGETWKPDpCQICTCLDGTtVLCDPVECPPPpDCPnpERVKPPGECCPRC 59
EGF_CA smart00179
Calcium-binding EGF-like domain;
443-475 1.51e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 42.62  E-value: 1.51e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 576067787   443 DIDECAEGrHYCRENTMCVNTPGSFMCICKTGY 475
Cdd:smart00179   1 DIDECASG-NPCQNGGTCVNTVGSYRCECPPGY 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
558-592 4.27e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 41.08  E-value: 4.27e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 576067787   558 DIDECSEGFVqCDSRANCINLPGWYHCECRDGYHD 592
Cdd:smart00179   1 DIDECASGNP-CQNGGTCVNTVGSYRCECPPGYTD 34
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 438-480 4.68e-05

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 45.45  E-value: 4.68e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 576067787 438 NAYCEDIDECAEGRHYCREntMCVNTPGSFMCICKTGYIRIDD 480
Cdd:cd01475  181 GKICVVPDLCATLSHVCQQ--VCISTPGSYLCACTEGYALLED 221
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 443-476 1.52e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 39.54  E-value: 1.52e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 576067787 443 DIDECAEGrHYCRENTMCVNTPGSFMCICKTGYI 476
Cdd:cd00054    1 DIDECASG-NPCQNGGTCVNTVGSYRCSCPPGYT 33
EGF_CA smart00179
Calcium-binding EGF-like domain;
487-525 1.61e-04

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 39.54  E-value: 1.61e-04
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 576067787   487 DECLTNqHNCDENALCFNTVGGHNCVCKPGYTgNGTTCK 525
Cdd:smart00179   3 DECASG-NPCQNGGTCVNTVGSYRCECPPGYT-DGRNCE 39
Laminin_G_3 pfam13385
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin ...
 89-213 2.24e-04

Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.


Pssm-ID: 463865 [Multi-domain]  Cd Length: 151  Bit Score: 42.37  E-value: 2.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067787   89 EFTILVTLKQIHLNSG--VILSIHHLDHRYLELESSGHrneIRLHYRSGTHRPHTEVFPYILADAKWHKLSLAFSASHLI 166
Cdd:pfam13385  18 DFTVSAWVKPDSLPGWarAIISSSGGGGYSLGLDGDGR---LRFAVNGGNGGWDTVTSGASVPLGQWTHVAVTYDGGTLR 94

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 576067787  167 LHIDCNKIYERVVeMPSTDLPLGTTFWLGQRNNAHGYFKGIMQDVHV 213
Cdd:pfam13385  95 LYVNGVLVGSSTL-TGGPPPGTGGPLYIGRSPGGDDYFNGLIDEVRI 140
VWC smart00214
von Willebrand factor (vWF) type C domain;
277-333 3.76e-04

von Willebrand factor (vWF) type C domain;


Pssm-ID: 214564  Cd Length: 59  Bit Score: 39.04  E-value: 3.76e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067787   277 CTVKGTTYRESESWTDGCKN-CTCLNG-TIQCETLVCP-APDCPPKSaPAYVDGKCCKEC 333
Cdd:smart00214   1 CVHNGRVYNDGETWKPDPCQiCTCLDGtTVLCDPVECPpPPDCPNPE-RVKPPGECCPRC 59
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 558-591 3.76e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 38.39  E-value: 3.76e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 576067787 558 DIDECSEGFVqCDSRANCINLPGWYHCECRDGYH 591
Cdd:cd00054    1 DIDECASGNP-CQNGGTCVNTVGSYRCSCPPGYT 33
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 487-519 5.01e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 38.39  E-value: 5.01e-04
                         10        20        30
                 ....*....|....*....|....*....|...
gi 576067787 487 DECLTNqHNCDENALCFNTVGGHNCVCKPGYTG 519
Cdd:cd00054    3 DECASG-NPCQNGGTCVNTVGSYRCSCPPGYTG 34
VWC_out smart00215
von Willebrand factor (vWF) type C domain;
277-316 1.65e-03

von Willebrand factor (vWF) type C domain;


Pssm-ID: 214565  Cd Length: 67  Bit Score: 37.54  E-value: 1.65e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 576067787   277 CTVKGTTYRESESWTDGCKNCTCLNGTIQCETLVCPAPDC 316
Cdd:smart00215   1 CWNNGSYYPPGAKWDDDCNRCTCLNGRVSCTKVWCGPKPC 40
EGF_CA smart00179
Calcium-binding EGF-like domain;
605-644 2.16e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 36.46  E-value: 2.16e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 576067787   605 DIDECGTGrHSCTNDTICFNLDGGYDCRCPHGKNCTGDCV 644
Cdd:smart00179   1 DIDECASG-NPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39
VWC_out smart00215
von Willebrand factor (vWF) type C domain;
710-744 7.50e-03

von Willebrand factor (vWF) type C domain;


Pssm-ID: 214565  Cd Length: 67  Bit Score: 35.62  E-value: 7.50e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 576067787   710 TVYNSGDTWVQDCRQCRCLQGEVDCWPLACPEVEC 744
Cdd:smart00215   6 SYYPPGAKWDDDCNRCTCLNGRVSCTKVWCGPKPC 40
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 605-636 7.89e-03

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 34.92  E-value: 7.89e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 576067787 605 DIDECGTGrHSCTNDTICFNLDGGYDCRCPHG 636
Cdd:cd00054    1 DIDECASG-NPCQNGGTCVNTVGSYRCSCPPG 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH