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Conserved domains on  [gi|575501569|ref|NP_001276446|]
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anaphase-promoting complex subunit 5 isoform c [Mus musculus]

Protein Classification

Apc5_N and ANAPC5 domain-containing protein( domain architecture ID 10888568)

Apc5_N and ANAPC5 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Apc5_N cd16270
N-terminal domain of the anaphase-promoting complex subunit Apc5 (or Anapc5); The N-terminal ...
 20-153 1.44e-41

N-terminal domain of the anaphase-promoting complex subunit Apc5 (or Anapc5); The N-terminal domain of Apc5 interacts with subunits Apc4, Apc15, and CDC23. Apc5 is a subunit of the eukaryotic anaphase-promoting complex/cyclosome (APC/C) which is a multi-subunit ubiquitin ligase that mediates the proteolysis of cell cycle proteins in mitosis and G1. Although Apc5 does not contain a classical RNA binding domain, it binds the poly(A) binding protein (PABP), which directly binds the internal ribosome entry site (IRES) of growth factor 2 mRNA. PABP was found to enhance IRES-mediated translation, whereas Apc5 over-expression counteracted this effect. In addition to its association with the APC/C complex, Apc5 binds much heavier complexes and co-sediments with the ribosomal fraction. The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC.


:

Pssm-ID: 293878  Cd Length: 143  Bit Score: 148.16  E-value: 1.44e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575501569  20 PYKIAVLVLLNEMGRTGEGA--VSLVERRKLNQLLLPLLQGPDITLSKLYKLIEESC--PQLANSVQIRIKLMAEGELKD 95
Cdd:cd16270    1 PHKIAVLVLIKEYCRLKDSAwtLSPKERRDFCILLLKLIQGPDMTLKELIKLIEEVCylPQLLDSFLERLKLIAEEGIDD 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 575501569  96 MEQFFDDLSDSFSGTEPE-----VHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQQYFQNG 153
Cdd:cd16270   81 LLDFFDSLERLLSGSEEEvepalLHKSSVLGLFLRRMLLAFNKLSFSQVVKLYKSFQQYYESG 143
ANAPC5 pfam12862
Anaphase-promoting complex subunit 5; Apc5 is a subunit of the anaphase-promoting complex ...
 239-339 9.56e-35

Anaphase-promoting complex subunit 5; Apc5 is a subunit of the anaphase-promoting complex/cyclosome (APC/C) which is a multi-subunit ubiquitin ligase that mediates the proteolysis of cell cycle proteins in mitosis and G1. Apc5, although it does not harbour a classical RNA binding domain, Apc5 binds the poly(A) binding protein (PABP), which directly binds the internal ribosome entry site (IRES) of growth factor 2 mRNA. PABP was found to enhance IRES-mediated translation, whereas Apc5 over-expression counteracted this effect. In addition to its association with the APC/C complex, Apc5 binds much heavier complexes and co-sediments with the ribosomal fraction. The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC. This region of the Apc5 member proteins carries a TPR-like motif.


:

Pssm-ID: 432838  Cd Length: 91  Bit Score: 126.95  E-value: 9.56e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575501569  239 HYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAEgksngeegygRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQE 318
Cdd:pfam12862   1 HYLSYLNALRVKDYQSALDSLHRYFDYMLTQNEE----------SFYQYALLNLASLHADFGHNEEAVAAIEEAIRLARE 70

                          90       100
                  ....*....|....*....|.
gi 575501569  319 SNDHVCLQHCLSWLYVLGQKR 339
Cdd:pfam12862  71 NKDTACLNHALSWLYNFLKAY 91
 
Name Accession Description Interval E-value
Apc5_N cd16270
N-terminal domain of the anaphase-promoting complex subunit Apc5 (or Anapc5); The N-terminal ...
 20-153 1.44e-41

N-terminal domain of the anaphase-promoting complex subunit Apc5 (or Anapc5); The N-terminal domain of Apc5 interacts with subunits Apc4, Apc15, and CDC23. Apc5 is a subunit of the eukaryotic anaphase-promoting complex/cyclosome (APC/C) which is a multi-subunit ubiquitin ligase that mediates the proteolysis of cell cycle proteins in mitosis and G1. Although Apc5 does not contain a classical RNA binding domain, it binds the poly(A) binding protein (PABP), which directly binds the internal ribosome entry site (IRES) of growth factor 2 mRNA. PABP was found to enhance IRES-mediated translation, whereas Apc5 over-expression counteracted this effect. In addition to its association with the APC/C complex, Apc5 binds much heavier complexes and co-sediments with the ribosomal fraction. The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC.


Pssm-ID: 293878  Cd Length: 143  Bit Score: 148.16  E-value: 1.44e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575501569  20 PYKIAVLVLLNEMGRTGEGA--VSLVERRKLNQLLLPLLQGPDITLSKLYKLIEESC--PQLANSVQIRIKLMAEGELKD 95
Cdd:cd16270    1 PHKIAVLVLIKEYCRLKDSAwtLSPKERRDFCILLLKLIQGPDMTLKELIKLIEEVCylPQLLDSFLERLKLIAEEGIDD 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 575501569  96 MEQFFDDLSDSFSGTEPE-----VHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQQYFQNG 153
Cdd:cd16270   81 LLDFFDSLERLLSGSEEEvepalLHKSSVLGLFLRRMLLAFNKLSFSQVVKLYKSFQQYYESG 143
ANAPC5 pfam12862
Anaphase-promoting complex subunit 5; Apc5 is a subunit of the anaphase-promoting complex ...
 239-339 9.56e-35

Anaphase-promoting complex subunit 5; Apc5 is a subunit of the anaphase-promoting complex/cyclosome (APC/C) which is a multi-subunit ubiquitin ligase that mediates the proteolysis of cell cycle proteins in mitosis and G1. Apc5, although it does not harbour a classical RNA binding domain, Apc5 binds the poly(A) binding protein (PABP), which directly binds the internal ribosome entry site (IRES) of growth factor 2 mRNA. PABP was found to enhance IRES-mediated translation, whereas Apc5 over-expression counteracted this effect. In addition to its association with the APC/C complex, Apc5 binds much heavier complexes and co-sediments with the ribosomal fraction. The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC. This region of the Apc5 member proteins carries a TPR-like motif.


Pssm-ID: 432838  Cd Length: 91  Bit Score: 126.95  E-value: 9.56e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575501569  239 HYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAEgksngeegygRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQE 318
Cdd:pfam12862   1 HYLSYLNALRVKDYQSALDSLHRYFDYMLTQNEE----------SFYQYALLNLASLHADFGHNEEAVAAIEEAIRLARE 70

                          90       100
                  ....*....|....*....|.
gi 575501569  319 SNDHVCLQHCLSWLYVLGQKR 339
Cdd:pfam12862  71 NKDTACLNHALSWLYNFLKAY 91
 
Name Accession Description Interval E-value
Apc5_N cd16270
N-terminal domain of the anaphase-promoting complex subunit Apc5 (or Anapc5); The N-terminal ...
 20-153 1.44e-41

N-terminal domain of the anaphase-promoting complex subunit Apc5 (or Anapc5); The N-terminal domain of Apc5 interacts with subunits Apc4, Apc15, and CDC23. Apc5 is a subunit of the eukaryotic anaphase-promoting complex/cyclosome (APC/C) which is a multi-subunit ubiquitin ligase that mediates the proteolysis of cell cycle proteins in mitosis and G1. Although Apc5 does not contain a classical RNA binding domain, it binds the poly(A) binding protein (PABP), which directly binds the internal ribosome entry site (IRES) of growth factor 2 mRNA. PABP was found to enhance IRES-mediated translation, whereas Apc5 over-expression counteracted this effect. In addition to its association with the APC/C complex, Apc5 binds much heavier complexes and co-sediments with the ribosomal fraction. The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC.


Pssm-ID: 293878  Cd Length: 143  Bit Score: 148.16  E-value: 1.44e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575501569  20 PYKIAVLVLLNEMGRTGEGA--VSLVERRKLNQLLLPLLQGPDITLSKLYKLIEESC--PQLANSVQIRIKLMAEGELKD 95
Cdd:cd16270    1 PHKIAVLVLIKEYCRLKDSAwtLSPKERRDFCILLLKLIQGPDMTLKELIKLIEEVCylPQLLDSFLERLKLIAEEGIDD 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 575501569  96 MEQFFDDLSDSFSGTEPE-----VHKTSVVGLFLRHMILAYSKLSFSQVFKLYTALQQYFQNG 153
Cdd:cd16270   81 LLDFFDSLERLLSGSEEEvepalLHKSSVLGLFLRRMLLAFNKLSFSQVVKLYKSFQQYYESG 143
ANAPC5 pfam12862
Anaphase-promoting complex subunit 5; Apc5 is a subunit of the anaphase-promoting complex ...
 239-339 9.56e-35

Anaphase-promoting complex subunit 5; Apc5 is a subunit of the anaphase-promoting complex/cyclosome (APC/C) which is a multi-subunit ubiquitin ligase that mediates the proteolysis of cell cycle proteins in mitosis and G1. Apc5, although it does not harbour a classical RNA binding domain, Apc5 binds the poly(A) binding protein (PABP), which directly binds the internal ribosome entry site (IRES) of growth factor 2 mRNA. PABP was found to enhance IRES-mediated translation, whereas Apc5 over-expression counteracted this effect. In addition to its association with the APC/C complex, Apc5 binds much heavier complexes and co-sediments with the ribosomal fraction. The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC. This region of the Apc5 member proteins carries a TPR-like motif.


Pssm-ID: 432838  Cd Length: 91  Bit Score: 126.95  E-value: 9.56e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575501569  239 HYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAEgksngeegygRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQE 318
Cdd:pfam12862   1 HYLSYLNALRVKDYQSALDSLHRYFDYMLTQNEE----------SFYQYALLNLASLHADFGHNEEAVAAIEEAIRLARE 70

                          90       100
                  ....*....|....*....|.
gi 575501569  319 SNDHVCLQHCLSWLYVLGQKR 339
Cdd:pfam12862  71 NKDTACLNHALSWLYNFLKAY 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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