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Conserved domains on  [gi|556695480|ref|NP_001273341|]
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ETS-related transcription factor Elf-1 isoform 2 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ETS smart00413
erythroblast transformation specific domain; variation of the helix-turn-helix motif
 170-252 1.07e-44

erythroblast transformation specific domain; variation of the helix-turn-helix motif


:

Pssm-ID: 197710  Cd Length: 87  Bit Score: 153.19  E-value: 1.07e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695480   170 TIYLWEFLLALLQDKATcPKYIKWTQREKGIFKLVDSKAVSRLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLV 249
Cdd:smart00413   1 GIQLWQFLLDLLLDPEN-SDIIKWTDRDEGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYYKKNILEKVPGKRLV 79


                   ...
gi 556695480   250 YQF 252
Cdd:smart00413  80 YKF 82
Elf-1_N pfam12310
Transcription factor protein N terminal; This domain family is found in eukaryotes, and is ...
 2-127 1.35e-30

Transcription factor protein N terminal; This domain family is found in eukaryotes, and is approximately 110 amino acids in length. The family is found in association with pfam00178. There is a conserved PAVIVE sequence motif. Elf-1 is an immune cell specific transcription factor. It is found in T cells, B cells, megakaryocytes,and mast cells and is involved in the control of transcription for various immune proteins. These include IL-2, GM-CSF, IL-5, IL-2 receptor alpha chain, and CD4 in T cells, IgH, blk, and lyn in B cells, TdT in T and B cells, IL-3 in megakaryocytes, and SCL and Fc-epsilon-RI alpha chain in mast cells.


:

Pssm-ID: 463529  Cd Length: 109  Bit Score: 115.25  E-value: 1.35e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695480    2 AAVVQQNDLVFEFASNGMEDEQQLGDPAIFPAVIVEHVPGADILNSYAGLA-CVEEPNDMITESSLDVAeeeiidddddd 80
Cdd:pfam12310   1 AAVVQQGGLVFEFASNGMEDEQQLGDPSVFPAVIVEEVPGADLEQGYSGLVlVYDDETDLMQDFSLDVA----------- 69

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 556695480   81 itltDNNIFsssEDDIVApiTHVSVTLDGIPEVMETQQVQET--NADSP 127
Cdd:pfam12310  70 ----EEQEI---ETEDVT--LTVEASVHGTVECMDTIEAAEAllNMDSP 109
 
Name Accession Description Interval E-value
ETS smart00413
erythroblast transformation specific domain; variation of the helix-turn-helix motif
 170-252 1.07e-44

erythroblast transformation specific domain; variation of the helix-turn-helix motif


Pssm-ID: 197710  Cd Length: 87  Bit Score: 153.19  E-value: 1.07e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695480   170 TIYLWEFLLALLQDKATcPKYIKWTQREKGIFKLVDSKAVSRLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLV 249
Cdd:smart00413   1 GIQLWQFLLDLLLDPEN-SDIIKWTDRDEGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYYKKNILEKVPGKRLV 79


                   ...
gi 556695480   250 YQF 252
Cdd:smart00413  80 YKF 82
Ets pfam00178
Ets-domain;
172-252 1.76e-43

Ets-domain;


Pssm-ID: 459700  Cd Length: 80  Bit Score: 149.57  E-value: 1.76e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695480  172 YLWEFLLALLQDKaTCPKYIKWTQREKGIFKLVDSKAVSRLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQ 251
Cdd:pfam00178   1 QLWQFLLDLLTDP-EYSDIIKWTDKEEGEFRLVDPEAVARLWGKRKGNPKMTYEKLSRALRYYYKKGILEKVPGKRLTYR 79


                  .
gi 556695480  252 F 252
Cdd:pfam00178  80 F 80
Elf-1_N pfam12310
Transcription factor protein N terminal; This domain family is found in eukaryotes, and is ...
 2-127 1.35e-30

Transcription factor protein N terminal; This domain family is found in eukaryotes, and is approximately 110 amino acids in length. The family is found in association with pfam00178. There is a conserved PAVIVE sequence motif. Elf-1 is an immune cell specific transcription factor. It is found in T cells, B cells, megakaryocytes,and mast cells and is involved in the control of transcription for various immune proteins. These include IL-2, GM-CSF, IL-5, IL-2 receptor alpha chain, and CD4 in T cells, IgH, blk, and lyn in B cells, TdT in T and B cells, IL-3 in megakaryocytes, and SCL and Fc-epsilon-RI alpha chain in mast cells.


Pssm-ID: 463529  Cd Length: 109  Bit Score: 115.25  E-value: 1.35e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695480    2 AAVVQQNDLVFEFASNGMEDEQQLGDPAIFPAVIVEHVPGADILNSYAGLA-CVEEPNDMITESSLDVAeeeiidddddd 80
Cdd:pfam12310   1 AAVVQQGGLVFEFASNGMEDEQQLGDPSVFPAVIVEEVPGADLEQGYSGLVlVYDDETDLMQDFSLDVA----------- 69

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 556695480   81 itltDNNIFsssEDDIVApiTHVSVTLDGIPEVMETQQVQET--NADSP 127
Cdd:pfam12310  70 ----EEQEI---ETEDVT--LTVEASVHGTVECMDTIEAAEAllNMDSP 109
 
Name Accession Description Interval E-value
ETS smart00413
erythroblast transformation specific domain; variation of the helix-turn-helix motif
 170-252 1.07e-44

erythroblast transformation specific domain; variation of the helix-turn-helix motif


Pssm-ID: 197710  Cd Length: 87  Bit Score: 153.19  E-value: 1.07e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695480   170 TIYLWEFLLALLQDKATcPKYIKWTQREKGIFKLVDSKAVSRLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLV 249
Cdd:smart00413   1 GIQLWQFLLDLLLDPEN-SDIIKWTDRDEGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYYKKNILEKVPGKRLV 79


                   ...
gi 556695480   250 YQF 252
Cdd:smart00413  80 YKF 82
Ets pfam00178
Ets-domain;
172-252 1.76e-43

Ets-domain;


Pssm-ID: 459700  Cd Length: 80  Bit Score: 149.57  E-value: 1.76e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695480  172 YLWEFLLALLQDKaTCPKYIKWTQREKGIFKLVDSKAVSRLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQ 251
Cdd:pfam00178   1 QLWQFLLDLLTDP-EYSDIIKWTDKEEGEFRLVDPEAVARLWGKRKGNPKMTYEKLSRALRYYYKKGILEKVPGKRLTYR 79


                  .
gi 556695480  252 F 252
Cdd:pfam00178  80 F 80
Elf-1_N pfam12310
Transcription factor protein N terminal; This domain family is found in eukaryotes, and is ...
 2-127 1.35e-30

Transcription factor protein N terminal; This domain family is found in eukaryotes, and is approximately 110 amino acids in length. The family is found in association with pfam00178. There is a conserved PAVIVE sequence motif. Elf-1 is an immune cell specific transcription factor. It is found in T cells, B cells, megakaryocytes,and mast cells and is involved in the control of transcription for various immune proteins. These include IL-2, GM-CSF, IL-5, IL-2 receptor alpha chain, and CD4 in T cells, IgH, blk, and lyn in B cells, TdT in T and B cells, IL-3 in megakaryocytes, and SCL and Fc-epsilon-RI alpha chain in mast cells.


Pssm-ID: 463529  Cd Length: 109  Bit Score: 115.25  E-value: 1.35e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556695480    2 AAVVQQNDLVFEFASNGMEDEQQLGDPAIFPAVIVEHVPGADILNSYAGLA-CVEEPNDMITESSLDVAeeeiidddddd 80
Cdd:pfam12310   1 AAVVQQGGLVFEFASNGMEDEQQLGDPSVFPAVIVEEVPGADLEQGYSGLVlVYDDETDLMQDFSLDVA----------- 69

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 556695480   81 itltDNNIFsssEDDIVApiTHVSVTLDGIPEVMETQQVQET--NADSP 127
Cdd:pfam12310  70 ----EEQEI---ETEDVT--LTVEASVHGTVECMDTIEAAEAllNMDSP 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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