|
Name |
Accession |
Description |
Interval |
E-value |
| HAT |
pfam02184 |
HAT (Half-A-TPR) repeat; The HAT (Half A TPR) repeat is found in several RNA processing ... |
196-227 |
2.20e-10 |
|
HAT (Half-A-TPR) repeat; The HAT (Half A TPR) repeat is found in several RNA processing proteins.
Pssm-ID: 111114 [Multi-domain] Cd Length: 32 Bit Score: 56.03 E-value: 2.20e-10
10 20 30
....*....|....*....|....*....|..
gi 520975432 196 KEVDRARTIYERFVLVHPDVKNWIKYARFEEK 227
Cdd:pfam02184 1 KEIDRARGIYERFVHVHPEVQNWIKWARFEEE 32
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
92-281 |
1.03e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 53.96 E-value: 1.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 92 ESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQV 171
Cdd:COG2956 53 RRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEV 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 172 FERWMEWQPEE-QAWHSYINFELRYKEVDRARTIYERFVLVHPD-VKNWIKYARFEEKHAYFAHARKVYERAVEffgDEH 249
Cdd:COG2956 133 LERLLKLGPENaHAYCELAELYLEQGDYDEAIEALEKALKLDPDcARALLLLAELYLEQGDYEEAIAALERALE---QDP 209
|
170 180 190
....*....|....*....|....*....|..
gi 520975432 250 MDEHLYVAFAKFEENQKEFERVRVIYKYALDR 281
Cdd:COG2956 210 DYLPALPRLAELYEKLGDPEEALELLRKALEL 241
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
319-563 |
2.33e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 49.73 E-value: 2.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 319 YEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIAnvppiqekRHWKRYIYLwinYALYEE-LEAKDPERTRQVY 397
Cdd:COG2956 31 LEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLE--------RDPDRAEAL---LELAQDyLKAGLLDRAEELL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 398 QASLELIPHKkftfAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKNKLFKVYI-ELELQLREFDRCRKLYEKFLEFGP 476
Cdd:COG2956 100 EKLLELDPDD----AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELaELYLEQGDYDEAIEALEKALKLDP 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 477 ENCTSWIKFAELETILGDIDRARAIYELAISQpRLDMPEVLwKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQ 556
Cdd:COG2956 176 DCARALLLLAELYLEQGDYEEAIAALERALEQ-DPDYLPAL-PRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAD 253
|
....*..
gi 520975432 557 FELSSGK 563
Cdd:COG2956 254 LLERKEG 260
|
|
| RNA14 |
COG5107 |
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and ... |
72-525 |
1.83e-05 |
|
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification];
Pssm-ID: 227438 [Multi-domain] Cd Length: 660 Bit Score: 48.09 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 72 DNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNqF 151
Cdd:COG5107 33 ERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLD-L 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 152 WYKY-TYMEEMLGNVAGAR-----QVFERWMEWQPEEQA----WHSYINFELRYKE---------VDRARTIYERFVLV- 211
Cdd:COG5107 112 WMLYlEYIRRVNNLITGQKrfkiyEAYEFVLGCAIFEPQsenyWDEYGLFLEYIEElgkweeqqrIDKIRNGYMRALQTp 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 212 -HPDVKNWIKYARFEEKHAYFAHARKVYERAVEFFGdehmdehlyvAFAKFEENQKEFERVRVIYKYALDRISK--QDAQ 288
Cdd:COG5107 192 mGNLEKLWKDYENFELELNKITARKFVGETSPIYMS----------ARQRYQEIQNLTRGLSVKNPINLRTANKaaRTSD 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 289 ELFKNYTIFEKKFGDRRGiEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEK-- 366
Cdd:COG5107 262 SNWLNWIKWEMENGLKLG-GRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFls 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 367 RHWK--------RYIYLWINYAL---YEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARral 435
Cdd:COG5107 341 EYYElvndeeavYGCFDKCTQDLkrkYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAAR--- 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 436 gTSIGKCPKNKLF--KVYIELELQLREFDRCRKLYEKFLEFG----PENCTSWIKFAELETILGDIDRARAIYELAISQP 509
Cdd:COG5107 418 -KLFIKLRKEGIVghHVYIYCAFIEYYATGDRATAYNIFELGllkfPDSTLYKEKYLLFLIRINDEENARALFETSVERL 496
|
490
....*....|....*.
gi 520975432 510 RLDMPEVLWKSYIDFE 525
Cdd:COG5107 497 EKTQLKRIYDKMIEYE 512
|
|
| HAT |
smart00386 |
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ... |
95-127 |
4.68e-04 |
|
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Pssm-ID: 214642 [Multi-domain] Cd Length: 33 Bit Score: 37.91 E-value: 4.68e-04
10 20 30
....*....|....*....|....*....|...
gi 520975432 95 KEIQRARSIYERALDVDYRNITLWLKYAEMEMK 127
Cdd:smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEER 33
|
|
| HAT |
smart00386 |
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ... |
196-227 |
8.35e-04 |
|
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Pssm-ID: 214642 [Multi-domain] Cd Length: 33 Bit Score: 37.14 E-value: 8.35e-04
10 20 30
....*....|....*....|....*....|...
gi 520975432 196 KEVDRARTIYERFVLVHP-DVKNWIKYARFEEK 227
Cdd:smart00386 1 GDIERARKIYERALEKFPkSVELWLKYAEFEER 33
|
|
| HAT |
smart00386 |
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ... |
493-527 |
6.59e-03 |
|
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Pssm-ID: 214642 [Multi-domain] Cd Length: 33 Bit Score: 34.83 E-value: 6.59e-03
10 20 30
....*....|....*....|....*....|....*
gi 520975432 493 GDIDRARAIYELAISQPRLDMPevLWKSYIDFEIE 527
Cdd:smart00386 1 GDIERARKIYERALEKFPKSVE--LWLKYAEFEER 33
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| HAT |
pfam02184 |
HAT (Half-A-TPR) repeat; The HAT (Half A TPR) repeat is found in several RNA processing ... |
196-227 |
2.20e-10 |
|
HAT (Half-A-TPR) repeat; The HAT (Half A TPR) repeat is found in several RNA processing proteins.
Pssm-ID: 111114 [Multi-domain] Cd Length: 32 Bit Score: 56.03 E-value: 2.20e-10
10 20 30
....*....|....*....|....*....|..
gi 520975432 196 KEVDRARTIYERFVLVHPDVKNWIKYARFEEK 227
Cdd:pfam02184 1 KEIDRARGIYERFVHVHPEVQNWIKWARFEEE 32
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
92-281 |
1.03e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 53.96 E-value: 1.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 92 ESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQV 171
Cdd:COG2956 53 RRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEV 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 172 FERWMEWQPEE-QAWHSYINFELRYKEVDRARTIYERFVLVHPD-VKNWIKYARFEEKHAYFAHARKVYERAVEffgDEH 249
Cdd:COG2956 133 LERLLKLGPENaHAYCELAELYLEQGDYDEAIEALEKALKLDPDcARALLLLAELYLEQGDYEEAIAALERALE---QDP 209
|
170 180 190
....*....|....*....|....*....|..
gi 520975432 250 MDEHLYVAFAKFEENQKEFERVRVIYKYALDR 281
Cdd:COG2956 210 DYLPALPRLAELYEKLGDPEEALELLRKALEL 241
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
319-563 |
2.33e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 49.73 E-value: 2.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 319 YEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIAnvppiqekRHWKRYIYLwinYALYEE-LEAKDPERTRQVY 397
Cdd:COG2956 31 LEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLE--------RDPDRAEAL---LELAQDyLKAGLLDRAEELL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 398 QASLELIPHKkftfAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKNKLFKVYI-ELELQLREFDRCRKLYEKFLEFGP 476
Cdd:COG2956 100 EKLLELDPDD----AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELaELYLEQGDYDEAIEALEKALKLDP 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 477 ENCTSWIKFAELETILGDIDRARAIYELAISQpRLDMPEVLwKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQ 556
Cdd:COG2956 176 DCARALLLLAELYLEQGDYEEAIAALERALEQ-DPDYLPAL-PRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAD 253
|
....*..
gi 520975432 557 FELSSGK 563
Cdd:COG2956 254 LLERKEG 260
|
|
| RNA14 |
COG5107 |
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and ... |
318-527 |
3.15e-06 |
|
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification];
Pssm-ID: 227438 [Multi-domain] Cd Length: 660 Bit Score: 50.40 E-value: 3.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 318 QYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERaIANVPPIQEkRHWKRYIYLWINYALYEELEAKDPERTRQVY 397
Cdd:COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQ-LSSPFPIME-HAWRLYMSGELARKDFRSVESLFGRCLKKSL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 398 QASLeliphkkftfakmWILYAQFeIRQKNLSLARRAlgtsigkcpKNKLFKVYiELELQLREFDRCRK----LYEKFLE 473
Cdd:COG5107 108 NLDL-------------WMLYLEY-IRRVNNLITGQK---------RFKIYEAY-EFVLGCAIFEPQSEnywdEYGLFLE 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 520975432 474 FGPENCTsWikfaELETilgDIDRARAIYELAISQPrLDMPEVLWKSYIDFEIE 527
Cdd:COG5107 164 YIEELGK-W----EEQQ---RIDKIRNGYMRALQTP-MGNLEKLWKDYENFELE 208
|
|
| RNA14 |
COG5107 |
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and ... |
72-525 |
1.83e-05 |
|
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification];
Pssm-ID: 227438 [Multi-domain] Cd Length: 660 Bit Score: 48.09 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 72 DNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNqF 151
Cdd:COG5107 33 ERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLD-L 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 152 WYKY-TYMEEMLGNVAGAR-----QVFERWMEWQPEEQA----WHSYINFELRYKE---------VDRARTIYERFVLV- 211
Cdd:COG5107 112 WMLYlEYIRRVNNLITGQKrfkiyEAYEFVLGCAIFEPQsenyWDEYGLFLEYIEElgkweeqqrIDKIRNGYMRALQTp 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 212 -HPDVKNWIKYARFEEKHAYFAHARKVYERAVEFFGdehmdehlyvAFAKFEENQKEFERVRVIYKYALDRISK--QDAQ 288
Cdd:COG5107 192 mGNLEKLWKDYENFELELNKITARKFVGETSPIYMS----------ARQRYQEIQNLTRGLSVKNPINLRTANKaaRTSD 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 289 ELFKNYTIFEKKFGDRRGiEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEK-- 366
Cdd:COG5107 262 SNWLNWIKWEMENGLKLG-GRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFls 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 367 RHWK--------RYIYLWINYAL---YEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARral 435
Cdd:COG5107 341 EYYElvndeeavYGCFDKCTQDLkrkYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAAR--- 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 436 gTSIGKCPKNKLF--KVYIELELQLREFDRCRKLYEKFLEFG----PENCTSWIKFAELETILGDIDRARAIYELAISQP 509
Cdd:COG5107 418 -KLFIKLRKEGIVghHVYIYCAFIEYYATGDRATAYNIFELGllkfPDSTLYKEKYLLFLIRINDEENARALFETSVERL 496
|
490
....*....|....*.
gi 520975432 510 RLDMPEVLWKSYIDFE 525
Cdd:COG5107 497 EKTQLKRIYDKMIEYE 512
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
88-281 |
1.95e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 47.03 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 88 AQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAG 167
Cdd:COG2956 83 AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 168 ARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWI-KYARFEEKHAYFAHARKVYERAVEff 245
Cdd:COG2956 163 AIEALEKALKLDPDcARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALpRLAELYEKLGDPEEALELLRKALE-- 240
|
170 180 190
....*....|....*....|....*....|....*.
gi 520975432 246 gdEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDR 281
Cdd:COG2956 241 --LDPSDDLLLALADLLERKEGLEAALALLERQLRR 274
|
|
| COG5191 |
COG5191 |
Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function ... |
64-195 |
2.74e-05 |
|
Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only];
Pssm-ID: 227518 [Multi-domain] Cd Length: 435 Bit Score: 47.26 E-value: 2.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 64 LRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARS----------------------IYERALDVDYRNITLWLKY 121
Cdd:COG5191 34 VKTRRKFELRLQRREKKLNDFMRYIKYECNLEKLRAKRVkrkkvgkkasfsdmsipqkkifELYRSTNKFFNDPKIWSQY 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 520975432 122 AEMEMKNRQVNHARNIWDRAITTLPRVNQFW-YKYTYMEEMLGNVAGARQVFERWMEWQPE-EQAWHSYINFELRY 195
Cdd:COG5191 114 AAYVIKKKMYGEMKNIFAECLTKHPLNVDLWiYCCAFELFEIANIESSRAMFLKGLRMNSRsPRIWIEYFRMELMY 189
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
84-207 |
3.73e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 45.88 E-value: 3.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 84 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 163
Cdd:COG2956 147 YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 520975432 164 NVAGARQVFERWMEWQPEEQAWHSYINFELRYKEVDRARTIYER 207
Cdd:COG2956 227 DPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLER 270
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
20-189 |
3.73e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 46.91 E-value: 3.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 20 NKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLrKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQR 99
Cdd:COG3914 52 AEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEE-ALALYRRALALNPDNAEALFNLGNLLLALGRLEE 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 100 ARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQ 179
Cdd:COG3914 131 ALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
170
....*....|
gi 520975432 180 PEEQAWHSYI 189
Cdd:COG3914 211 PDNADAHSNL 220
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
84-214 |
5.36e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 43.64 E-value: 5.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 84 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 163
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 520975432 164 NVAGARQVFERWMEWQPEE-QAWHSYINFELRYKEVDRARTIYERFVLVHPD 214
Cdd:COG4783 87 DYDEALALLEKALKLDPEHpEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
84-185 |
2.44e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.53 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 84 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 163
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99
|
90 100
....*....|....*....|..
gi 520975432 164 NVAGARQVFERWMEWQPEEQAW 185
Cdd:COG4235 100 DYAEAIAAWQKLLALLPADAPA 121
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
96-358 |
2.65e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.56 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 96 EIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERW 175
Cdd:COG2956 23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 176 MEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPD-VKNWIKYARFEEKHAYFAHARKVYERAVEFFGDehmDEH 253
Cdd:COG2956 103 LELDPDdAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEnAHAYCELAELYLEQGDYDEAIEALEKALKLDPD---CAR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 254 LYVAFAKFEENQKEFERVRVIYKYALdRISKQDAQELFKNYTIFEKKfGDRRGIEDIIvskrrfqyeEEVKANPHNYDAW 333
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERAL-EQDPDYLPALPRLAELYEKL-GDPEEALELL---------RKALELDPSDDLL 248
|
250 260
....*....|....*....|....*
gi 520975432 334 FDYLRLVESDAEAEAVREVYERAIA 358
Cdd:COG2956 249 LALADLLERKEGLEAALALLERQLR 273
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
21-214 |
2.66e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 44.21 E-value: 2.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 21 KAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRA 100
Cdd:COG3914 18 LAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 101 RSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQP 180
Cdd:COG3914 98 LALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP 177
|
170 180 190
....*....|....*....|....*....|....*
gi 520975432 181 EE-QAWHSYINFELRYKEVDRARTIYERFVLVHPD 214
Cdd:COG3914 178 DNaEALNNLGNALQDLGRLEEAIAAYRRALELDPD 212
|
|
| HAT |
smart00386 |
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ... |
95-127 |
4.68e-04 |
|
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Pssm-ID: 214642 [Multi-domain] Cd Length: 33 Bit Score: 37.91 E-value: 4.68e-04
10 20 30
....*....|....*....|....*....|...
gi 520975432 95 KEIQRARSIYERALDVDYRNITLWLKYAEMEMK 127
Cdd:smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEER 33
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
323-546 |
4.83e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 42.30 E-value: 4.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 323 VKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPpiqekrhwkRYIYLWINYAL-YEELeaKDPERTRQVYQASL 401
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDP---------DDAEALYNLGLaYLRL--GRYEEALADYEQAL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 402 ELIPHkkftFAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKN-KLFKVYIELELQLREFDRCRKLYEKFLEFGPENCT 480
Cdd:COG0457 70 ELDPD----DAEALNNLGLALQALGRYEEALEDYDKALELDPDDaEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 520975432 481 SWIKFAELETILGDIDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQ 546
Cdd:COG0457 146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKL 211
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
343-543 |
4.84e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 43.44 E-value: 4.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 343 DAEAEAVREVYERAIANVPPIQEKR--HWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQ 420
Cdd:COG3914 7 LALAALAAAALLAAAAAAELALAAEleAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 421 FEIRQKNLSLARRALGTSIGKCPKNKLFKVYI-ELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRAR 499
Cdd:COG3914 87 LLQALGRYEEALALYRRALALNPDNAEALFNLgNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAI 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 520975432 500 AIYELAIS-QPrlDMPEVlWKSYIDFEIEQEETERTRNLYRRLLQ 543
Cdd:COG3914 167 AALRRALElDP--DNAEA-LNNLGNALQDLGRLEEAIAAYRRALE 208
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
84-182 |
5.92e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.56 E-value: 5.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 84 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 163
Cdd:COG4783 41 FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120
|
90
....*....|....*....
gi 520975432 164 NVAGARQVFERWMEWQPEE 182
Cdd:COG4783 121 RPDEAIAALEKALELDPDD 139
|
|
| HAT |
smart00386 |
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ... |
196-227 |
8.35e-04 |
|
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Pssm-ID: 214642 [Multi-domain] Cd Length: 33 Bit Score: 37.14 E-value: 8.35e-04
10 20 30
....*....|....*....|....*....|...
gi 520975432 196 KEVDRARTIYERFVLVHP-DVKNWIKYARFEEK 227
Cdd:smart00386 1 GDIERARKIYERALEKFPkSVELWLKYAEFEER 33
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
104-218 |
5.68e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 37.68 E-value: 5.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 104 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQ 183
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
90 100 110
....*....|....*....|....*....|....*.
gi 520975432 184 AWHSYI-NFELRYKEVDRARTIYERFVLVHPDVKNW 218
Cdd:COG4235 86 EALYLLgLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| HAT |
smart00386 |
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ... |
493-527 |
6.59e-03 |
|
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Pssm-ID: 214642 [Multi-domain] Cd Length: 33 Bit Score: 34.83 E-value: 6.59e-03
10 20 30
....*....|....*....|....*....|....*
gi 520975432 493 GDIDRARAIYELAISQPRLDMPevLWKSYIDFEIE 527
Cdd:smart00386 1 GDIERARKIYERALEKFPKSVE--LWLKYAEFEER 33
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
68-236 |
8.81e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 38.45 E-value: 8.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 68 KTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPR 147
Cdd:COG0457 29 EDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPD 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 148 VNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEE 226
Cdd:COG0457 109 DAEALYNLGLALLELGRYDEAIEAYERALELDPDdADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAAL 188
|
170
....*....|
gi 520975432 227 KHAYFAHARK 236
Cdd:COG0457 189 ALAAAEVLLA 198
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
92-181 |
9.27e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 35.92 E-value: 9.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975432 92 ESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNiWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQV 171
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81
|
90
....*....|
gi 520975432 172 FERWMEWQPE 181
Cdd:COG3063 82 LERALELDPS 91
|
|
| |
