|
Name |
Accession |
Description |
Interval |
E-value |
| HAT |
pfam02184 |
HAT (Half-A-TPR) repeat; The HAT (Half A TPR) repeat is found in several RNA processing ... |
345-376 |
4.51e-11 |
|
HAT (Half-A-TPR) repeat; The HAT (Half A TPR) repeat is found in several RNA processing proteins.
Pssm-ID: 111114 [Multi-domain] Cd Length: 32 Bit Score: 57.96 E-value: 4.51e-11
10 20 30
....*....|....*....|....*....|..
gi 520975422 345 KEVDRARTIYERFVLVHPDVKNWIKYARFEEK 376
Cdd:pfam02184 1 KEIDRARGIYERFVHVHPEVQNWIKWARFEEE 32
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
241-430 |
1.18e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 57.05 E-value: 1.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 241 ESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQV 320
Cdd:COG2956 53 RRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEV 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 321 FERWMEWQPEE-QAWHSYINFELRYKEVDRARTIYERFVLVHPD-VKNWIKYARFEEKHAYFAHARKVYERAVEffgDEH 398
Cdd:COG2956 133 LERLLKLGPENaHAYCELAELYLEQGDYDEAIEALEKALKLDPDcARALLLLAELYLEQGDYEEAIAALERALE---QDP 209
|
170 180 190
....*....|....*....|....*....|..
gi 520975422 399 MDEHLYVAFAKFEENQKEFERVRVIYKYALDR 430
Cdd:COG2956 210 DYLPALPRLAELYEKLGDPEEALELLRKALEL 241
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
468-712 |
1.46e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 53.58 E-value: 1.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 468 YEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIAnvppiqekRHWKRYIYLwinYALYEE-LEAKDPERTRQVY 546
Cdd:COG2956 31 LEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLE--------RDPDRAEAL---LELAQDyLKAGLLDRAEELL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 547 QASLELIPHKkftfAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKNKLFKVYI-ELELQLREFDRCRKLYEKFLEFGP 625
Cdd:COG2956 100 EKLLELDPDD----AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELaELYLEQGDYDEAIEALEKALKLDP 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 626 ENCTSWIKFAELETILGDIDRARAIYELAISQpRLDMPEVLwKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQ 705
Cdd:COG2956 176 DCARALLLLAELYLEQGDYEEAIAALERALEQ-DPDYLPAL-PRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAD 253
|
....*..
gi 520975422 706 FELSSGK 712
Cdd:COG2956 254 LLERKEG 260
|
|
| RNA14 |
COG5107 |
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and ... |
221-674 |
1.68e-06 |
|
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification];
Pssm-ID: 227438 [Multi-domain] Cd Length: 660 Bit Score: 51.56 E-value: 1.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 221 DNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNqF 300
Cdd:COG5107 33 ERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLD-L 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 301 WYKY-TYMEEMLGNVAGAR-----QVFERWMEWQPEEQA----WHSYINFELRYKE---------VDRARTIYERFVLV- 360
Cdd:COG5107 112 WMLYlEYIRRVNNLITGQKrfkiyEAYEFVLGCAIFEPQsenyWDEYGLFLEYIEElgkweeqqrIDKIRNGYMRALQTp 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 361 -HPDVKNWIKYARFEEKHAYFAHARKVYERAVEFFGdehmdehlyvAFAKFEENQKEFERVRVIYKYALDRISK--QDAQ 437
Cdd:COG5107 192 mGNLEKLWKDYENFELELNKITARKFVGETSPIYMS----------ARQRYQEIQNLTRGLSVKNPINLRTANKaaRTSD 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 438 ELFKNYTIFEKKFGDRRGiEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEK-- 515
Cdd:COG5107 262 SNWLNWIKWEMENGLKLG-GRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFls 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 516 RHWK--------RYIYLWINYAL---YEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARral 584
Cdd:COG5107 341 EYYElvndeeavYGCFDKCTQDLkrkYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAAR--- 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 585 gTSIGKCPKNKLF--KVYIELELQLREFDRCRKLYEKFLEFGP---ENCTSWI-KFAELETILGDIDRARAIYELAISQP 658
Cdd:COG5107 418 -KLFIKLRKEGIVghHVYIYCAFIEYYATGDRATAYNIFELGLlkfPDSTLYKeKYLLFLIRINDEENARALFETSVERL 496
|
490
....*....|....*.
gi 520975422 659 RLDMPEVLWKSYIDFE 674
Cdd:COG5107 497 EKTQLKRIYDKMIEYE 512
|
|
| HAT |
smart00386 |
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ... |
244-276 |
1.42e-04 |
|
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Pssm-ID: 214642 [Multi-domain] Cd Length: 33 Bit Score: 39.45 E-value: 1.42e-04
10 20 30
....*....|....*....|....*....|...
gi 520975422 244 KEIQRARSIYERALDVDYRNITLWLKYAEMEMK 276
Cdd:smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEER 33
|
|
| HAT |
smart00386 |
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ... |
345-376 |
2.17e-04 |
|
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Pssm-ID: 214642 [Multi-domain] Cd Length: 33 Bit Score: 39.07 E-value: 2.17e-04
10 20 30
....*....|....*....|....*....|...
gi 520975422 345 KEVDRARTIYERFVLVHP-DVKNWIKYARFEEK 376
Cdd:smart00386 1 GDIERARKIYERALEKFPkSVELWLKYAEFEER 33
|
|
| HAT |
smart00386 |
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ... |
642-676 |
1.94e-03 |
|
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Pssm-ID: 214642 [Multi-domain] Cd Length: 33 Bit Score: 36.37 E-value: 1.94e-03
10 20 30
....*....|....*....|....*....|....*
gi 520975422 642 GDIDRARAIYELAISQPRLDMPevLWKSYIDFEIE 676
Cdd:smart00386 1 GDIERARKIYERALEKFPKSVE--LWLKYAEFEER 33
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
244-649 |
6.65e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 40.07 E-value: 6.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 244 KEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFER 323
Cdd:TIGR02917 479 GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEK 558
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 324 WMEWQPEEQAWH-SYINFELRYKEVDRARTIYERFVLVHPDVKN-WIKYARFEEKHAYFAHARKVYERAVEFFGDeHMDE 401
Cdd:TIGR02917 559 AAELNPQEIEPAlALAQYYLGKGQLKKALAILNEAADAAPDSPEaWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALA 637
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 402 HLYVAFAkfEENQKEFERVRVIYKYALDRISKQD-AQELFKNYTIFEKKFgdrrgiEDIIVSKRRFQYEEEVKANPHNYD 480
Cdd:TIGR02917 638 LLLLADA--YAVMKNYAKAITSLKRALELKPDNTeAQIGLAQLLLAAKRT------ESAKKIAKSLQKQHPKAALGFELE 709
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 481 AWFdYLRLVESDAEAEAVREVYERAIANVPPIQEKR----------------HW--KRYIYLWINYALYEELEA-KDPER 541
Cdd:TIGR02917 710 GDL-YLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRallasgntaeavktleAWlkTHPNDAVLRTALAELYLAqKDYDK 788
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 542 TRQVYQASLELIPHKKFTFAKMWILYAQFEiRQKNLSLARRALGTSIGKCPknkLFKVYIELELQLREFDRCRKLYEKFL 621
Cdd:TIGR02917 789 AIKHYQTVVKKAPDNAVVLNNLAWLYLELK-DPRALEYAERALKLAPNIPA---ILDTLGWLLVEKGEADRALPLLRKAV 864
|
410 420
....*....|....*....|....*...
gi 520975422 622 EFGPENCTSWIKFAELETILGDIDRARA 649
Cdd:TIGR02917 865 NIAPEAAAIRYHLALALLATGRKAEARK 892
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| HAT |
pfam02184 |
HAT (Half-A-TPR) repeat; The HAT (Half A TPR) repeat is found in several RNA processing ... |
345-376 |
4.51e-11 |
|
HAT (Half-A-TPR) repeat; The HAT (Half A TPR) repeat is found in several RNA processing proteins.
Pssm-ID: 111114 [Multi-domain] Cd Length: 32 Bit Score: 57.96 E-value: 4.51e-11
10 20 30
....*....|....*....|....*....|..
gi 520975422 345 KEVDRARTIYERFVLVHPDVKNWIKYARFEEK 376
Cdd:pfam02184 1 KEIDRARGIYERFVHVHPEVQNWIKWARFEEE 32
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
241-430 |
1.18e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 57.05 E-value: 1.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 241 ESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQV 320
Cdd:COG2956 53 RRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEV 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 321 FERWMEWQPEE-QAWHSYINFELRYKEVDRARTIYERFVLVHPD-VKNWIKYARFEEKHAYFAHARKVYERAVEffgDEH 398
Cdd:COG2956 133 LERLLKLGPENaHAYCELAELYLEQGDYDEAIEALEKALKLDPDcARALLLLAELYLEQGDYEEAIAALERALE---QDP 209
|
170 180 190
....*....|....*....|....*....|..
gi 520975422 399 MDEHLYVAFAKFEENQKEFERVRVIYKYALDR 430
Cdd:COG2956 210 DYLPALPRLAELYEKLGDPEEALELLRKALEL 241
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
468-712 |
1.46e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 53.58 E-value: 1.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 468 YEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIAnvppiqekRHWKRYIYLwinYALYEE-LEAKDPERTRQVY 546
Cdd:COG2956 31 LEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLE--------RDPDRAEAL---LELAQDyLKAGLLDRAEELL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 547 QASLELIPHKkftfAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKNKLFKVYI-ELELQLREFDRCRKLYEKFLEFGP 625
Cdd:COG2956 100 EKLLELDPDD----AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELaELYLEQGDYDEAIEALEKALKLDP 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 626 ENCTSWIKFAELETILGDIDRARAIYELAISQpRLDMPEVLwKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQ 705
Cdd:COG2956 176 DCARALLLLAELYLEQGDYEEAIAALERALEQ-DPDYLPAL-PRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAD 253
|
....*..
gi 520975422 706 FELSSGK 712
Cdd:COG2956 254 LLERKEG 260
|
|
| RNA14 |
COG5107 |
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and ... |
467-676 |
4.74e-07 |
|
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification];
Pssm-ID: 227438 [Multi-domain] Cd Length: 660 Bit Score: 53.48 E-value: 4.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 467 QYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERaIANVPPIQEkRHWKRYIYLWINYALYEELEAKDPERTRQVY 546
Cdd:COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQ-LSSPFPIME-HAWRLYMSGELARKDFRSVESLFGRCLKKSL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 547 QASLeliphkkftfakmWILYAQFeIRQKNLSLARRAlgtsigkcpKNKLFKVYiELELQLREFDRCRK----LYEKFLE 622
Cdd:COG5107 108 NLDL-------------WMLYLEY-IRRVNNLITGQK---------RFKIYEAY-EFVLGCAIFEPQSEnywdEYGLFLE 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 520975422 623 FGPENCTsWikfaELETilgDIDRARAIYELAISQPrLDMPEVLWKSYIDFEIE 676
Cdd:COG5107 164 YIEELGK-W----EEQQ---RIDKIRNGYMRALQTP-MGNLEKLWKDYENFELE 208
|
|
| RNA14 |
COG5107 |
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and ... |
221-674 |
1.68e-06 |
|
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification];
Pssm-ID: 227438 [Multi-domain] Cd Length: 660 Bit Score: 51.56 E-value: 1.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 221 DNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNqF 300
Cdd:COG5107 33 ERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLD-L 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 301 WYKY-TYMEEMLGNVAGAR-----QVFERWMEWQPEEQA----WHSYINFELRYKE---------VDRARTIYERFVLV- 360
Cdd:COG5107 112 WMLYlEYIRRVNNLITGQKrfkiyEAYEFVLGCAIFEPQsenyWDEYGLFLEYIEElgkweeqqrIDKIRNGYMRALQTp 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 361 -HPDVKNWIKYARFEEKHAYFAHARKVYERAVEFFGdehmdehlyvAFAKFEENQKEFERVRVIYKYALDRISK--QDAQ 437
Cdd:COG5107 192 mGNLEKLWKDYENFELELNKITARKFVGETSPIYMS----------ARQRYQEIQNLTRGLSVKNPINLRTANKaaRTSD 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 438 ELFKNYTIFEKKFGDRRGiEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEK-- 515
Cdd:COG5107 262 SNWLNWIKWEMENGLKLG-GRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFls 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 516 RHWK--------RYIYLWINYAL---YEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARral 584
Cdd:COG5107 341 EYYElvndeeavYGCFDKCTQDLkrkYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAAR--- 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 585 gTSIGKCPKNKLF--KVYIELELQLREFDRCRKLYEKFLEFGP---ENCTSWI-KFAELETILGDIDRARAIYELAISQP 658
Cdd:COG5107 418 -KLFIKLRKEGIVghHVYIYCAFIEYYATGDRATAYNIFELGLlkfPDSTLYKeKYLLFLIRINDEENARALFETSVERL 496
|
490
....*....|....*.
gi 520975422 659 RLDMPEVLWKSYIDFE 674
Cdd:COG5107 497 EKTQLKRIYDKMIEYE 512
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
237-430 |
2.93e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 49.73 E-value: 2.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 237 AQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAG 316
Cdd:COG2956 83 AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 317 ARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWI-KYARFEEKHAYFAHARKVYERAVEff 394
Cdd:COG2956 163 AIEALEKALKLDPDcARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALpRLAELYEKLGDPEEALELLRKALE-- 240
|
170 180 190
....*....|....*....|....*....|....*.
gi 520975422 395 gdEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDR 430
Cdd:COG2956 241 --LDPSDDLLLALADLLERKEGLEAALALLERQLRR 274
|
|
| COG5191 |
COG5191 |
Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function ... |
213-344 |
7.95e-06 |
|
Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only];
Pssm-ID: 227518 [Multi-domain] Cd Length: 435 Bit Score: 49.19 E-value: 7.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 213 LRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARS----------------------IYERALDVDYRNITLWLKY 270
Cdd:COG5191 34 VKTRRKFELRLQRREKKLNDFMRYIKYECNLEKLRAKRVkrkkvgkkasfsdmsipqkkifELYRSTNKFFNDPKIWSQY 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 520975422 271 AEMEMKNRQVNHARNIWDRAITTLPRVNQFW-YKYTYMEEMLGNVAGARQVFERWMEWQPE-EQAWHSYINFELRY 344
Cdd:COG5191 114 AAYVIKKKMYGEMKNIFAECLTKHPLNVDLWiYCCAFELFEIANIESSRAMFLKGLRMNSRsPRIWIEYFRMELMY 189
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
233-356 |
1.08e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.19 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 233 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 312
Cdd:COG2956 147 YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 520975422 313 NVAGARQVFERWMEWQPEEQAWHSYINFELRYKEVDRARTIYER 356
Cdd:COG2956 227 DPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLER 270
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
233-363 |
1.20e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.95 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 233 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 312
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 520975422 313 NVAGARQVFERWMEWQPEE-QAWHSYINFELRYKEVDRARTIYERFVLVHPD 363
Cdd:COG4783 87 DYDEALALLEKALKLDPEHpEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
245-507 |
2.56e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 47.03 E-value: 2.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 245 EIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERW 324
Cdd:COG2956 23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 325 MEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPD-VKNWIKYARFEEKHAYFAHARKVYERAVEFFGDehmDEH 402
Cdd:COG2956 103 LELDPDdAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEnAHAYCELAELYLEQGDYDEAIEALEKALKLDPD---CAR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 403 LYVAFAKFEENQKEFERVRVIYKYALdRISKQDAQELFKNYTIFEKKfGDRRGIEDIIvskrrfqyeEEVKANPHNYDAW 482
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERAL-EQDPDYLPALPRLAELYEKL-GDPEEALELL---------RKALELDPSDDLL 248
|
250 260
....*....|....*....|....*
gi 520975422 483 FDYLRLVESDAEAEAVREVYERAIA 507
Cdd:COG2956 249 LALADLLERKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
472-695 |
3.38e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 46.15 E-value: 3.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 472 VKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPpiqekrhwkRYIYLWINYAL-YEELeaKDPERTRQVYQASL 550
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDP---------DDAEALYNLGLaYLRL--GRYEEALADYEQAL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 551 ELIPHkkftFAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKN-KLFKVYIELELQLREFDRCRKLYEKFLEFGPENCT 629
Cdd:COG0457 70 ELDPD----DAEALNNLGLALQALGRYEEALEDYDKALELDPDDaEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 520975422 630 SWIKFAELETILGDIDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQ 695
Cdd:COG0457 146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKL 211
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
169-338 |
4.58e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 46.91 E-value: 4.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 169 NKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLrKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQR 248
Cdd:COG3914 52 AEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEE-ALALYRRALALNPDNAEALFNLGNLLLALGRLEE 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 249 ARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQ 328
Cdd:COG3914 131 ALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
170
....*....|
gi 520975422 329 PEEQAWHSYI 338
Cdd:COG3914 211 PDNADAHSNL 220
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
233-334 |
1.13e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.69 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 233 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 312
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99
|
90 100
....*....|....*....|..
gi 520975422 313 NVAGARQVFERWMEWQPEEQAW 334
Cdd:COG4235 100 DYAEAIAAWQKLLALLPADAPA 121
|
|
| HAT |
smart00386 |
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ... |
244-276 |
1.42e-04 |
|
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Pssm-ID: 214642 [Multi-domain] Cd Length: 33 Bit Score: 39.45 E-value: 1.42e-04
10 20 30
....*....|....*....|....*....|...
gi 520975422 244 KEIQRARSIYERALDVDYRNITLWLKYAEMEMK 276
Cdd:smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEER 33
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
233-331 |
1.77e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.49 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 233 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 312
Cdd:COG4783 41 FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120
|
90
....*....|....*....
gi 520975422 313 NVAGARQVFERWMEWQPEE 331
Cdd:COG4783 121 RPDEAIAALEKALELDPDD 139
|
|
| HAT |
smart00386 |
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ... |
345-376 |
2.17e-04 |
|
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Pssm-ID: 214642 [Multi-domain] Cd Length: 33 Bit Score: 39.07 E-value: 2.17e-04
10 20 30
....*....|....*....|....*....|...
gi 520975422 345 KEVDRARTIYERFVLVHP-DVKNWIKYARFEEK 376
Cdd:smart00386 1 GDIERARKIYERALEKFPkSVELWLKYAEFEER 33
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
170-363 |
3.01e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 44.21 E-value: 3.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 170 KAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRA 249
Cdd:COG3914 18 LAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 250 RSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQP 329
Cdd:COG3914 98 LALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP 177
|
170 180 190
....*....|....*....|....*....|....*
gi 520975422 330 EE-QAWHSYINFELRYKEVDRARTIYERFVLVHPD 363
Cdd:COG3914 178 DNaEALNNLGNALQDLGRLEEAIAAYRRALELDPD 212
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
492-692 |
5.76e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 43.44 E-value: 5.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 492 DAEAEAVREVYERAIANVPPIQEKR--HWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQ 569
Cdd:COG3914 7 LALAALAAAALLAAAAAAELALAAEleAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 570 FEIRQKNLSLARRALGTSIGKCPKNKLFKVYI-ELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRAR 648
Cdd:COG3914 87 LLQALGRYEEALALYRRALALNPDNAEALFNLgNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAI 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 520975422 649 AIYELAIS-QPrlDMPEVlWKSYIDFEIEQEETERTRNLYRRLLQ 692
Cdd:COG3914 167 AALRRALElDP--DNAEA-LNNLGNALQDLGRLEEAIAAYRRALE 208
|
|
| HAT |
smart00386 |
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ... |
642-676 |
1.94e-03 |
|
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Pssm-ID: 214642 [Multi-domain] Cd Length: 33 Bit Score: 36.37 E-value: 1.94e-03
10 20 30
....*....|....*....|....*....|....*
gi 520975422 642 GDIDRARAIYELAISQPRLDMPevLWKSYIDFEIE 676
Cdd:smart00386 1 GDIERARKIYERALEKFPKSVE--LWLKYAEFEER 33
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
217-385 |
2.00e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 40.76 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 217 KTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPR 296
Cdd:COG0457 29 EDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPD 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 297 VNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEE 375
Cdd:COG0457 109 DAEALYNLGLALLELGRYDEAIEAYERALELDPDdADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAAL 188
|
170
....*....|
gi 520975422 376 KHAYFAHARK 385
Cdd:COG0457 189 ALAAAEVLLA 198
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
253-367 |
2.65e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.83 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 253 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQ 332
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
90 100 110
....*....|....*....|....*....|....*.
gi 520975422 333 AWHSYI-NFELRYKEVDRARTIYERFVLVHPDVKNW 367
Cdd:COG4235 86 EALYLLgLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
241-330 |
2.69e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 241 ESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNiWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQV 320
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81
|
90
....*....|
gi 520975422 321 FERWMEWQPE 330
Cdd:COG3063 82 LERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
243-329 |
4.99e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.40 E-value: 4.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 243 LKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFE 322
Cdd:COG5010 67 LGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146
|
....*..
gi 520975422 323 RWMEWQP 329
Cdd:COG5010 147 RALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
244-649 |
6.65e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 40.07 E-value: 6.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 244 KEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFER 323
Cdd:TIGR02917 479 GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEK 558
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 324 WMEWQPEEQAWH-SYINFELRYKEVDRARTIYERFVLVHPDVKN-WIKYARFEEKHAYFAHARKVYERAVEFFGDeHMDE 401
Cdd:TIGR02917 559 AAELNPQEIEPAlALAQYYLGKGQLKKALAILNEAADAAPDSPEaWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALA 637
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 402 HLYVAFAkfEENQKEFERVRVIYKYALDRISKQD-AQELFKNYTIFEKKFgdrrgiEDIIVSKRRFQYEEEVKANPHNYD 480
Cdd:TIGR02917 638 LLLLADA--YAVMKNYAKAITSLKRALELKPDNTeAQIGLAQLLLAAKRT------ESAKKIAKSLQKQHPKAALGFELE 709
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 481 AWFdYLRLVESDAEAEAVREVYERAIANVPPIQEKR----------------HW--KRYIYLWINYALYEELEA-KDPER 541
Cdd:TIGR02917 710 GDL-YLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRallasgntaeavktleAWlkTHPNDAVLRTALAELYLAqKDYDK 788
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520975422 542 TRQVYQASLELIPHKKFTFAKMWILYAQFEiRQKNLSLARRALGTSIGKCPknkLFKVYIELELQLREFDRCRKLYEKFL 621
Cdd:TIGR02917 789 AIKHYQTVVKKAPDNAVVLNNLAWLYLELK-DPRALEYAERALKLAPNIPA---ILDTLGWLLVEKGEADRALPLLRKAV 864
|
410 420
....*....|....*....|....*...
gi 520975422 622 EFGPENCTSWIKFAELETILGDIDRARA 649
Cdd:TIGR02917 865 NIAPEAAAIRYHLALALLATGRKAEARK 892
|
|
| |
