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Conserved domains on  [gi|410991928|ref|NP_001258609|]
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cylicin-1 isoform 2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cylicin_N super family cl21100
Cylicin N-terminus; This is the N-terminus of cylicin proteins, which may play a role in ...
 7-57 2.89e-23

Cylicin N-terminus; This is the N-terminus of cylicin proteins, which may play a role in spermatid differentiation.


The actual alignment was detected with superfamily member pfam15241:

Pssm-ID: 464581  Cd Length: 107  Bit Score: 84.41  E-value: 2.89e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 410991928    7 KVNIRTYDNSIPISESSRKSWNQKHFALTFPKPLQRGTNDKSRPLKSQITV 57
Cdd:pfam15241   1 KVNIGTYDNYIPVSESSKKSWNQQHFSLTFPKPPRPGKKRRSRPSELQETV 51
 
Name Accession Description Interval E-value
Cylicin_N pfam15241
Cylicin N-terminus; This is the N-terminus of cylicin proteins, which may play a role in ...
 7-57 2.89e-23

Cylicin N-terminus; This is the N-terminus of cylicin proteins, which may play a role in spermatid differentiation.


Pssm-ID: 464581  Cd Length: 107  Bit Score: 84.41  E-value: 2.89e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 410991928    7 KVNIRTYDNSIPISESSRKSWNQKHFALTFPKPLQRGTNDKSRPLKSQITV 57
Cdd:pfam15241   1 KVNIGTYDNYIPVSESSKKSWNQQHFSLTFPKPPRPGKKRRSRPSELQETV 51
 
Name Accession Description Interval E-value
Cylicin_N pfam15241
Cylicin N-terminus; This is the N-terminus of cylicin proteins, which may play a role in ...
 7-57 2.89e-23

Cylicin N-terminus; This is the N-terminus of cylicin proteins, which may play a role in spermatid differentiation.


Pssm-ID: 464581  Cd Length: 107  Bit Score: 84.41  E-value: 2.89e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 410991928    7 KVNIRTYDNSIPISESSRKSWNQKHFALTFPKPLQRGTNDKSRPLKSQITV 57
Cdd:pfam15241   1 KVNIGTYDNYIPVSESSKKSWNQQHFSLTFPKPPRPGKKRRSRPSELQETV 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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