|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
14-357 |
6.44e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.70 E-value: 6.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 14 LEELRAQV--LQLVAEL-EETRELAGQHEDDSLELQGL----LEDERLASAQQAEVFTKQIQQLQGELQHLREEISLLEH 86
Cdd:TIGR02168 195 LNELERQLksLERQAEKaERYKELKAELRELELALLVLrleeLREELEELQEELKEAEEELEELTAELQELEEKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 87 EKEselkEMEQELHLAQAEIQNLRQAAAD---SATEHESDIASLQDDLCRLQNDLDDMERIRGDYEMEIASLRAEMELKT 163
Cdd:TIGR02168 275 EVS----ELEEEIEELQKELYALANEISRleqQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 164 SEPSNLSiSDFSGIQDELHHLRERYNLLNEEYQALRESNSSLTGQLAELESDRTRraterwLESHLLRSTMSSESQTSEL 243
Cdd:TIGR02168 351 EELESLE-AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER------LEARLERLEDRRERLQQEI 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 244 dfpepdpvmQLLRQQLlgAEEQMQDMQDKCKNLYCELEELQHHRRTSEEEQKRLQRELKCAQNEVLRFQTSHSTQHEELK 323
Cdd:TIGR02168 424 ---------EELLKKL--EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
|
330 340 350
....*....|....*....|....*....|....
gi 319655563 324 SrLCTLQQKYDASQDEHSELLKVQMQLETELQQL 357
Cdd:TIGR02168 493 S-LERLQENLEGFSEGVKALLKNQSGLSGILGVL 525
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
7-311 |
5.73e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 5.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 7 LSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERlasaQQAEVFTKQIQQLQGELQHLREEISLLE- 85
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE----AEVEQLEERIAQLSKELTELEAEIEELEe 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 86 --HEKESELKEMEQELHLAQAEIQNLRQAAADS----------ATEHESDIASLQDDLCRLQNDLDDMERIRGDYEMEIA 153
Cdd:TIGR02168 769 rlEEAEEELAEAEAEIEELEAQIEQLKEELKALrealdelraeLTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 154 SLRAEMELKTSEPSNLSISdFSGIQDELHHLRERYNLLNEEYQALRESNSSLTGQLAELESDRTRraterwlESHLLRST 233
Cdd:TIGR02168 849 ELSEDIESLAAEIEELEEL-IEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE-------LRRELEEL 920
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 319655563 234 MSSESQtseldfpepdpvmqlLRQQLLGAEEQMQDMQDKCKNLY-CELEELQHHRRTSEEEQKRLQRELKCAQNEVLRF 311
Cdd:TIGR02168 921 REKLAQ---------------LELRLEGLEVRIDNLQERLSEEYsLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
11-358 |
1.58e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 1.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 11 ETELEELRAQV------LQLVAELEETRELAGQHEDDSLELQ-GLLEDERLASAQQAEVFTKQIQQLQGELQHLREEIsl 83
Cdd:COG1196 199 ERQLEPLERQAekaeryRELKEELKELEAELLLLKLRELEAElEELEAELEELEAELEELEAELAELEAELEELRLEL-- 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 84 leHEKESELKEMEQELHLAQAEIQNLrqaaadsatehESDIASLQDDLCRLQNDLDDMERirgdyemEIASLRAEMELkt 163
Cdd:COG1196 277 --EELELELEEAQAEEYELLAELARL-----------EQDIARLEERRRELEERLEELEE-------ELAELEEELEE-- 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 164 sepsnlsisdfsgIQDELHHLRERYNLLNEEYQALRESNSSLTGQLAELESDRTRRATErwlESHLLRSTMSSESQTSEl 243
Cdd:COG1196 335 -------------LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE---LEELAEELLEALRAAAE- 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 244 dfpepdpvmqlLRQQLLGAEEQMQDMQDKCKNLYCELEELQHHRRTSEEEQKRLQRELKCAQNEVLRFQTSHSTQHEELK 323
Cdd:COG1196 398 -----------LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
|
330 340 350
....*....|....*....|....*....|....*
gi 319655563 324 SRLCTLQQKYDASQDEHSELLKVQMQLETELQQLR 358
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
7-243 |
8.34e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 8.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 7 LSLTETELEELRAQVLQLVAELEET----RELAGQHEDDSLELQGLLEDERLASAQQAEVfTKQIQQLQGELQHLREEIS 82
Cdd:COG1196 241 LEELEAELEELEAELEELEAELAELeaelEELRLELEELELELEEAQAEEYELLAELARL-EQDIARLEERRRELEERLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 83 llehEKESELKEMEQELHLAQAEIQNLRQAAADSATEHESDIASLQDdlcrLQNDLDDMERIRGDYEMEIASLRAEMELK 162
Cdd:COG1196 320 ----ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE----AEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 163 TSEPSNLSISDFSGIQDELHHLRERYNLLNEEYQALRESNSSLTGQLAELESDRTRRATERWLESHLLRSTMSSESQTSE 242
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
.
gi 319655563 243 L 243
Cdd:COG1196 472 A 472
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
7-264 |
8.62e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 8.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 7 LSLTETELEELRAQVLQLVAELEETRElagQHEDDSLELQGLLEDERLASAQQAEV-------------FTKQIQQLQGE 73
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRL---ELEELELELEEAQAEEYELLAELARLeqdiarleerrreLEERLEELEEE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 74 LQHLREEISLLE---HEKESELKEMEQELHLAQAEIQNL----------RQAAADSATEHESDIASLQDDLCRLQNDLDD 140
Cdd:COG1196 325 LAELEEELEELEeelEELEEELEEAEEELEEAEAELAEAeealleaeaeLAEAEEELEELAEELLEALRAAAELAAQLEE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 141 MERIRGDYEMEIASLRAEMELKTSEPSNLSISdfsgIQDELHHLRERYNLLNEEYQALRESNSSLTGQLAELESDRTRRA 220
Cdd:COG1196 405 LEEAEEALLERLERLEEELEELEEALAELEEE----EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 319655563 221 TERW-LESHLLRSTMSSESQTSELDFPEPDPVMQLLRQQLLGAEE 264
Cdd:COG1196 481 ELLEeLAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
10-301 |
2.60e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 2.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 10 TETELEELRAQVLQLVAELEETR----ELAGQHEDDSLELQGLLEDERLASAQQAEVfTKQIQQLQGELQHLREEISLLE 85
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEkalaELRKELEELEEELEQLRKELEELSRQISAL-RKDLARLEAEVEQLEERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 86 HekesELKEMEQELHLAQAEIQNLRQAAAdsatEHESDIASLQDDLCRLQNDLDDMERIRGDYEMEIASLRAEMELKTSE 165
Cdd:TIGR02168 754 K----ELTELEAEIEELEERLEEAEEELA----EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 166 PSNLsisdfsgiQDELHHLRERYNLLNEEYQALRESNSSLTGQLAELESDRTRRATErwLESHLLRSTMSSESqtseldf 245
Cdd:TIGR02168 826 LESL--------ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE--LEALLNERASLEEA------- 888
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 319655563 246 pepdpvMQLLRQQLLGAEEQMQDMQDKCKNLYCELEELQHHRRTSEEEQKRLQREL 301
Cdd:TIGR02168 889 ------LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
7-524 |
7.71e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 7.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 7 LSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQ----------QAEVFTKQIQQLQGELQH 76
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQlelqiaslnnEIERLEARLERLEDRRER 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 77 LREEISLLE--------HEKESELKEMEQELHLAQAEIQNLRQA---AADSATEHESDIASLQDDLCRLQNDLDDMERIR 145
Cdd:TIGR02168 419 LQQEIEELLkkleeaelKELQAELEELEEELEELQEELERLEEAleeLREELEEAEQALDAAERELAQLQARLDSLERLQ 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 146 GDYEMEIASLRAEM--------------ELKTSEPS--------------NLSISDFSGIQDELHHLRE----------- 186
Cdd:TIGR02168 499 ENLEGFSEGVKALLknqsglsgilgvlsELISVDEGyeaaieaalggrlqAVVVENLNAAKKAIAFLKQnelgrvtflpl 578
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 187 ---RYNLLNEEYQALRESNSSLTGQLAELES--DRTRRATERWL--------------ESHLLRSTMSSESQTSELDFP- 246
Cdd:TIGR02168 579 dsiKGTEIQGNDREILKNIEGFLGVAKDLVKfdPKLRKALSYLLggvlvvddldnaleLAKKLRPGYRIVTLDGDLVRPg 658
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 247 --------EPDPVMQLLRQQLLGAEEQMQDMQDKCKNLYCELEELqhhrrtsEEEQKRLQRELKCAQNEVLRFQTSHSTQ 318
Cdd:TIGR02168 659 gvitggsaKTNSSILERRREIEELEEKIEELEEKIAELEKALAEL-------RKELEELEEELEQLRKELEELSRQISAL 731
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 319 HEELKSRLCTLQQKYDASQDEHSELLKVQMQLETELQQLRLLRCTPVESQSEKE-LMCRLQKLQAQHQcsvNEKEQLLEV 397
Cdd:TIGR02168 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEeLEAQIEQLKEELK---ALREALDEL 808
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 398 QHHLHD----------KLRCHESEVHRLRSMVDCLREKNEKNSGIHLQLQEMKGLYQFSRDELERQ-KHMYDQLEQDfll 466
Cdd:TIGR02168 809 RAELTLlneeaanlreRLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESElEALLNERASL--- 885
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 319655563 467 cQQELTELKSS-QSLCEENGNCSNKCDALLARLTELQDKFKASQEEIGHLQMEQCELLE 524
Cdd:TIGR02168 886 -EEALALLRSElEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
7-300 |
1.25e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 1.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 7 LSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERlasaqqaevftkqIQQLQGELQHLREEISLLE- 85
Cdd:TIGR02169 746 LSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR-------------IPEIQAELSKLEEEVSRIEa 812
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 86 --HEKESELKEMEQELHLAQAEIQNLRQAAADSatehESDIASLQDDLCRLQNDLDDMERIRGDYEMEIASLRAEMELKT 163
Cdd:TIGR02169 813 rlREIEQKLNRLTLEKEYLEKEIQELQEQRIDL----KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK 888
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 164 SEPSNLsisdfsgiQDELHHLRERYNLLNEEYQALRESNSSLTGQLAELESDrtrraterwlESHLLRSTMSSESQtsel 243
Cdd:TIGR02169 889 KERDEL--------EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE----------LSEIEDPKGEDEEI---- 946
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 319655563 244 dfPEPDPVMQLLRQQLLGAEEQMQDMQDKCKNLYCELEELQHHRRTSEEEQKRLQRE 300
Cdd:TIGR02169 947 --PEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEE 1001
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
69-396 |
4.17e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 4.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 69 QLQGELQHLREEISLLEHEKESELKEmeqelhlaQAEIQNLRQAAADSATEHESDIASLQDDLCRLQNDLDDMERIRGDY 148
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSE--------LRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 149 EMEIASLRAEMELKTSEPSNLsISDFSGIQDELHHLRERYNLL------------NEEYQALRESNSSLTGQLAELESDR 216
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKEL-EARIEELEEDLHKLEEALNDLearlshsripeiQAELSKLEEEVSRIEARLREIEQKL 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 217 TRRaterwlesHLLRSTMSSESQTSELDFPEPDPVMQLLRQQLLGAEEQMQDMQDKCKNLYCELEELQHHRRTSEEEQKR 296
Cdd:TIGR02169 822 NRL--------TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDE 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 297 LQRELKCAQNEvlrfQTSHSTQHEELKSRLCTLQQKYDASQDEHSELL-----------------KVQMQLETELQQLRL 359
Cdd:TIGR02169 894 LEAQLRELERK----IEELEAQIEKKRKRLSELKAKLEALEEELSEIEdpkgedeeipeeelsleDVQAELQRVEEEIRA 969
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 319655563 360 LRctPVES---QSEKELMCRLQKLQAQHQCSVNEKEQLLE 396
Cdd:TIGR02169 970 LE--PVNMlaiQEYEEVLKRLDELKEKRAKLEEERKAILE 1007
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
7-223 |
5.13e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 5.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 7 LSLTETELEELRAQVLQLvaelEETRELAGQHEDDSLELQGLledERLASAQQAEVFTKQIQQLQGELQHLREEISLLEH 86
Cdd:COG4913 237 LERAHEALEDAREQIELL----EPIRELAERYAAARERLAEL---EYLRAALRLWFAQRRLELLEAELEELRAELARLEA 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 87 EK---ESELKEmeqelhlAQAEIQNLRQAAADSATEhesDIASLQDDLCRLQNDLDDMERIRGDYEMEIASLraemelkt 163
Cdd:COG4913 310 ELerlEARLDA-------LREELDELEAQIRGNGGD---RLEQLEREIERLERELEERERRRARLEALLAAL-------- 371
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 164 SEPSNLSISDFSGIQDELHHLRERynlLNEEYQALRESNSSLTGQLAELESDRTRRATER 223
Cdd:COG4913 372 GLPLPASAEEFAALRAEAAALLEA---LEEELEALEEALAEAEAALRDLRRELRELEAEI 428
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
13-325 |
1.39e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 1.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 13 ELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQQaevfTKQIQQLQGELQHLREEISLLEHEKESEL 92
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEEL----ELELEEAQAEEYELLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 93 KEMEQelhlAQAEIQNLRQAAADSATEHESDIASLQddlcRLQNDLDDMERIRGDYEMEIASLRAEMELKTSEPSNLSIS 172
Cdd:COG1196 309 ERRRE----LEERLEELEEELAELEEELEELEEELE----ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 173 DFSGIQDELHHLRERYNLLNEEyQALRESNSSLTGQLAELESDRTRRATERwleshllrstmssesqtseldfpepdpvm 252
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQL-EELEEAEEALLERLERLEEELEELEEAL----------------------------- 430
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 319655563 253 QLLRQQLLGAEEQMQDMQDKCKNLYCELEELQHHRRTSEEEQKRLQRELKCAQNEVLRFQTSHSTQHEELKSR 325
Cdd:COG1196 431 AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
4-428 |
1.47e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.69 E-value: 1.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 4 HRGLSLTETELEELRAQVLQLVAELEETRELAGQHEDdslELQGLLEDERLASAQQAEVFTKQIQQLQGELQHLREEISL 83
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALRE---ELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRAR 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 84 LEH----------EKESELKEMEQELHLAQAEIQNLRQAAADSATEHESDIASLQDDLCRLQNDLDDMERIRGDYEMEIA 153
Cdd:COG4913 364 LEAllaalglplpASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLL 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 154 SLRAE------------------MELKTSEPS------------NLSI-------SDFSGIQDELH---HLR-ERYNLLN 192
Cdd:COG4913 444 ALRDAlaealgldeaelpfvgelIEVRPEEERwrgaiervlggfALTLlvppehyAAALRWVNRLHlrgRLVyERVRTGL 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 193 EEYQALRESNSSLTGQLAELESDRTRraterWLESHLLRS-----------------------TMSSESQTSELDFPEP- 248
Cdd:COG4913 524 PDPERPRLDPDSLAGKLDFKPHPFRA-----WLEAELGRRfdyvcvdspeelrrhpraitragQVKGNGTRHEKDDRRRi 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 249 --DPVM---------------QLLRQQLLGAEEQMQDMQDKCKNLYCELEELQHHRRTSEEEQ--KRLQRELKCAQNEVL 309
Cdd:COG4913 599 rsRYVLgfdnraklaaleaelAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELE 678
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 310 RFQTSHStQHEELKSRLCTLQQKYDASQDEHSELLKVQMQLETELQQLR--LLRCTPVESQSEKELMCRLQKLQAQHQCS 387
Cdd:COG4913 679 RLDASSD-DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEeeLDELQDRLEAAEDLARLELRALLEERFAA 757
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 319655563 388 VNEKEQLLEVQHHLHDKLRCHESEVHRLRS-MVDCLREKNEK 428
Cdd:COG4913 758 ALGDAVERELRENLEERIDALRARLNRAEEeLERAMRAFNRE 799
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
54-293 |
1.57e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 1.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 54 LASAQQAEVFTKQIQQLQGELQHLREEISLLEHEKES---ELKEMEQELHLAQAEIQNLRQAAADSatehESDIASLQDD 130
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKAllkQLAALERRIAALARRIRALEQELAAL----EAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 131 LCRLQNDLDDM-----ERIRGDYEMEIASlrAEMELKTSEPSNLSISDFSGIQDELHHLRERYNLLNEEYQALRESNSSL 205
Cdd:COG4942 92 IAELRAELEAQkeelaELLRALYRLGRQP--PLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 206 TGQLAELESDRTRRATERwlesHLLRSTMSSESQTseldfpepdpvMQLLRQQLLGAEEQMQDMQDKCKNLYCELEELQH 285
Cdd:COG4942 170 EAERAELEALLAELEEER----AALEALKAERQKL-----------LARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
....*...
gi 319655563 286 HRRTSEEE 293
Cdd:COG4942 235 EAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
14-226 |
1.58e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 14 LEELRAQVLQLVAELEETRELAGQHEDdsleLQGLLEDERLASAQQAEVFTKQI--QQLQGELQHLREEISLLEhEKESE 91
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEA----ELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELERLD-ASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 92 LKEMEQELHLAQAEIQNLRQ---AAADSATEHESDIASLQDDLCRLQNDLDDMERIRGDYEmeiaSLRAEMELKTSEPSN 168
Cdd:COG4913 687 LAALEEQLEELEAELEELEEeldELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL----RALLEERFAAALGDA 762
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 319655563 169 LSISDFSGIQDELHHLRERYNLLNEEYQALR------------------ESNSSLTGQLAELESDRTRRATERWLE 226
Cdd:COG4913 763 VERELRENLEERIDALRARLNRAEEELERAMrafnrewpaetadldadlESLPEYLALLDRLEEDGLPEYEERFKE 838
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
11-198 |
3.73e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 53.87 E-value: 3.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 11 ETELEELRAQVLQLVAELEETRElagQHEDDSLELQGLLEDERLASAQQAEVFTK-QIQQLQGELQHLREEISLLEHE-- 87
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQ---KNGLVDLSEEAKLLLQQLSELESQLAEARaELAEAEARLAALRAQLGSGPDAlp 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 88 ---KESELKEMEQELHLAQAEIQNLRQaaadSATEHESDIASLQDDLCRLQNDLDD-MERIRGDYEMEIASLRAEMELKT 163
Cdd:COG3206 258 ellQSPVIQQLRAQLAELEAELAELSA----RYTPNHPDVIALRAQIAALRAQLQQeAQRILASLEAELEALQAREASLQ 333
|
170 180 190
....*....|....*....|....*....|....*..
gi 319655563 164 SEPSNLS--ISDFSGIQDELHHLRERYNLLNEEYQAL 198
Cdd:COG3206 334 AQLAQLEarLAELPELEAELRRLEREVEVARELYESL 370
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
7-396 |
4.49e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 4.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 7 LSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLED----------ERLASAQQAEVFTKQIQQLQGELQH 76
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEaeeeleelaeELLEALRAAAELAAQLEELEEAEEA 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 77 LREEISLLEHEKES---ELKEMEQELHLAQAEIQNLRQAAADSATEHESDIASLQDDLCRLQNDLDDMERIRGDYEMEIA 153
Cdd:COG1196 412 LLERLERLEEELEEleeALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 154 SLRAEMELKTSEPSNLS-------ISDFSGIQDELHHLRERYN---------LLNEEYQALRESNSSLTGQLAELESDRT 217
Cdd:COG1196 492 RLLLLLEAEADYEGFLEgvkaallLAGLRGLAGAVAVLIGVEAayeaaleaaLAAALQNIVVEDDEVAAAAIEYLKAAKA 571
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 218 RRATERWLESHLLRSTMSSESQTSELDFP----EPDPVMQLLRQQLLGAEEQMQDMQDKcknlycELEELQHHRRTSEEE 293
Cdd:COG1196 572 GRATFLPLDKIRARAALAAALARGAIGAAvdlvASDLREADARYYVLGDTLLGRTLVAA------RLEAALRRAVTLAGR 645
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 294 QKRLQRELKCAQNEVLRFQTSHSTQHEELKSRLCTLQQKYDASQDEHSELLKVQMQLETELQQLRLLRCTPVESQSEKEL 373
Cdd:COG1196 646 LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA 725
|
410 420
....*....|....*....|...
gi 319655563 374 MCRLQKLQAQHQCSVNEKEQLLE 396
Cdd:COG1196 726 LEEQLEAEREELLEELLEEEELL 748
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
5-247 |
4.54e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 4.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 5 RGLSLTETELEELRAQVLQLVAELEE--TRELAGQHEDDSLELQGLLEDERLASAQ-QAEVFTKQIQQLQGELQHLREEI 81
Cdd:TIGR02168 260 AELQELEEKLEELRLEVSELEEEIEElqKELYALANEISRLEQQKQILRERLANLErQLEELEAQLEELESKLDELAEEL 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 82 SLLEHEKES---ELKEMEQELHLAQAEIQNLRQAAADSATEHE---SDIASLQDDLCRLQNDLDDMERIRGDYEMEIASL 155
Cdd:TIGR02168 340 AELEEKLEElkeELESLEAELEELEAELEELESRLEELEEQLEtlrSKVAQLELQIASLNNEIERLEARLERLEDRRERL 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 156 RAEMElktSEPSNLSISDFSGIQDELHHLRERYNLLNEEYQALRESNSSLTGQLAELESDrtRRATERWLESHLLRSTMS 235
Cdd:TIGR02168 420 QQEIE---ELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA--LDAAERELAQLQARLDSL 494
|
250
....*....|..
gi 319655563 236 SESQTSELDFPE 247
Cdd:TIGR02168 495 ERLQENLEGFSE 506
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
11-152 |
3.08e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.54 E-value: 3.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 11 ETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDerlASAQQAEVFT-KQIQQLQGELQHLREEISLLEheke 89
Cdd:COG1579 37 EDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKK---YEEQLGNVRNnKEYEALQKEIESLKRRISDLE---- 109
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 319655563 90 SELKEMEQELHLAQAEIQNLRQAAADSATEHESDIASLQDDLCRLQNDLDDMERIRGDYEMEI 152
Cdd:COG1579 110 DEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
51-390 |
6.97e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 6.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 51 DERLASA-QQAEVFTKQIQQLQGELQHLREEISLLEHEKE---------SELKEMEQELHLAQAEiqnlrqaaadsatEH 120
Cdd:TIGR02169 169 DRKKEKAlEELEEVEENIERLDLIIDEKRQQLERLRREREkaeryqallKEKREYEGYELLKEKE-------------AL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 121 ESDIASLQDDLCRLQNDLDDMERIRGDYEMEIASLRAEMELKTSEPSNLSISDFSGIQDELHHLRERYNLLNEEYQALRE 200
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 201 SNSSLTGQLAELESDRTR-RATERWLESHLLRSTMSSESQTSELDfpEPDPVMQLLRQQLLGAEEQMQDMQDKCKNLYCE 279
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKlLAEIEELEREIEEERKRRDKLTEEYA--ELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 280 LEELQHHRRTSEEEQKRLQRELKCAQNEVLRFQ---TSHSTQHEELKSRLCTLQQKYDASQDEHSELLKvqmQLETELQQ 356
Cdd:TIGR02169 394 LEKLKREINELKRELDRLQEELQRLSEELADLNaaiAGIEAKINELEEEKEDKALEIKKQEWKLEQLAA---DLSKYEQE 470
|
330 340 350
....*....|....*....|....*....|....*
gi 319655563 357 LRLLRCTPVESQSE-KELMCRLQKLQAQHQCSVNE 390
Cdd:TIGR02169 471 LYDLKEEYDRVEKElSKLQRELAEAEAQARASEER 505
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
58-480 |
7.35e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.77 E-value: 7.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 58 QQAEVFTKQIQQLQGELQHLREEISllehEKESELKEMEQELHLAQAEIQNLRQAAADSATEHEsdIASLQDDLCRLQND 137
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELE----ELEAELEELREELEKLEKLLQLLPLYQELEALEAE--LAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 138 LDDMERIRGDYEM---EIASLRAEMELKTSEPSNLSISDFSGIQDELHHLRERYNLLNEEYQALRESNSSLTGQLAELES 214
Cdd:COG4717 155 LEELRELEEELEEleaELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 215 DRTRRATERWLESHLLRSTMSSE------SQTSELDFPEPDPVMQLLRQQLLGAEEQMQDMQDKCKNLycELEELQHHRR 288
Cdd:COG4717 235 ELEAAALEERLKEARLLLLIAAAllallgLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK--EAEELQALPA 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 289 TSEEEQKRLQRELKcaqneVLRFQTSHSTQH-EELKSRLCTLQQKYDASQDEHSELLkvQMQLETELQQLrllrCTPVES 367
Cdd:COG4717 313 LEELEEEELEELLA-----ALGLPPDLSPEElLELLDRIEELQELLREAEELEEELQ--LEELEQEIAAL----LAEAGV 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 368 QSEKELMCRLQKLQaqhqcsvnEKEQLLEVQHHLHDKLRCHESEVHRLRSMVDclrekneknsgihlqLQEMKGLYQFSR 447
Cdd:COG4717 382 EDEEELRAALEQAE--------EYQELKEELEELEEQLEELLGELEELLEALD---------------EEELEEELEELE 438
|
410 420 430
....*....|....*....|....*....|...
gi 319655563 448 DELERQKHMYDQLEQDFLLCQQELTELKSSQSL 480
Cdd:COG4717 439 EELEELEEELEELREELAELEAELEQLEEDGEL 471
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
89-356 |
7.48e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.63 E-value: 7.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 89 ESELKEMEQELHLAQAEIQNLRQAAADSATEHESDIASLQddLCRLQNDLDDMERIRGDYEMEIASLRAEMELKTSEPSN 168
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQ--LSELESQLAEARAELAEAEARLAALRAQLGSGPDALPE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 169 LSIsdfsgiqdelhhlrerynllNEEYQALRESNSSLTGQLAELESdrtrrateRWLESHllrstmssesqtseldfpep 248
Cdd:COG3206 259 LLQ--------------------SPVIQQLRAQLAELEAELAELSA--------RYTPNH-------------------- 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 249 dPVMQLLRQQLLGAEEQMQDMQDKcknlycELEELQHHRRTSEEEQKRLQRELKCAQNEVLRFQtshstqheELKSRLCT 328
Cdd:COG3206 291 -PDVIALRAQIAALRAQLQQEAQR------ILASLEAELEALQAREASLQAQLAQLEARLAELP--------ELEAELRR 355
|
250 260
....*....|....*....|....*...
gi 319655563 329 LQQKYDASQDEHSELLKVQMQLETELQQ 356
Cdd:COG3206 356 LEREVEVARELYESLLQRLEEARLAEAL 383
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
4-218 |
1.14e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 4 HRGLSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGELQHLREEISL 83
Cdd:COG1196 598 GAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEA 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 84 LEHEKESELKEMEQELHLAQAEIQNLRQAAADSATEHESDIASLQDDLCRLQNDLDDMERIRGDYEMEIASLRAEMELKT 163
Cdd:COG1196 678 EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELP 757
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 319655563 164 SEPsnlsisDFSGIQDELHHLRERYNLLN-------EEYQALRESNSSLTGQLAELESDRTR 218
Cdd:COG1196 758 EPP------DLEELERELERLEREIEALGpvnllaiEEYEELEERYDFLSEQREDLEEARET 813
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
5-176 |
1.60e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 5 RGLSLTETELEELRAQVLQLVAELEETREL----------AGQHEDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGEL 74
Cdd:COG4942 76 QELAALEAELAELEKEIAELRAELEAQKEElaellralyrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEEL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 75 QHLREEISLLEHEKESELKEMEQELHLAQAEIQNLRQAAAdsatEHESDIASLQDDLCRLQNDLDDMERIRGDYEMEIAS 154
Cdd:COG4942 156 RADLAELAALRAELEAERAELEALLAELEEERAALEALKA----ERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
170 180
....*....|....*....|..
gi 319655563 155 LRAEMELKTSEPSNLSISDFSG 176
Cdd:COG4942 232 LEAEAAAAAERTPAAGFAALKG 253
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
7-527 |
2.06e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.50 E-value: 2.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 7 LSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQQAEVFTKQiQQLQGELQHLREEISLLEH 86
Cdd:PRK02224 215 LAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETERER-EELAEEVRDLRERLEELEE 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 87 EK-----ESELKEMEQE-LHLAQAEIQNLRQAAADSATEHESDIASLQDDLCRLQNDLDDMERIRGDYEMEIASLRAEME 160
Cdd:PRK02224 294 ERddllaEAGLDDADAEaVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 161 lKTSEPSNLSISDFSGIQDELHHLRERYNL-------LNEEYQALRESNSSLTGQLAELESDRtRRATERWLESHLLRst 233
Cdd:PRK02224 374 -EAREAVEDRREEIEELEEEIEELRERFGDapvdlgnAEDFLEELREERDELREREAELEATL-RTARERVEEAEALL-- 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 234 mssesqtSELDFPEpdpvmqlLRQQLLGAE--EQMQDMQDKCKNLYCELEELQHHRRTSEEEQKRLQrELKCAQNEVLRF 311
Cdd:PRK02224 450 -------EAGKCPE-------CGQPVEGSPhvETIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 312 QtshsTQHEELKSRLCTLQQKYDASQDEHSELLKVQMQLETELQQLRlLRCTPVESQSEKELMcRLQKLQAQHQCSVNEK 391
Cdd:PRK02224 515 E----ERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKR-EAAAEAEEEAEEARE-EVAELNSKLAELKERI 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 392 EQLlevqhhlhDKLRCHESEVHRLRSMVDCLREKNEknsgihlQLQEMKGLyqfSRDELERQKHMYDQLEQDFLlcQQEL 471
Cdd:PRK02224 589 ESL--------ERIRTLLAAIADAEDEIERLREKRE-------ALAELNDE---RRERLAEKRERKRELEAEFD--EARI 648
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 319655563 472 TELKSSQSLCEEN-GNCSNKCDALLARLTELQDKFKASQEEIghlqmEQCELLEDQR 527
Cdd:PRK02224 649 EEAREDKERAEEYlEQVEEKLDELREERDDLQAEIGAVENEL-----EELEELRERR 700
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
111-358 |
2.79e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 2.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 111 QAAADSATEHESDIASLQDDLCRLQNDLDDMERIRGDYEMEIASLRAEMELKTSEPSNLsisdfsgiQDELHHLRERYNL 190
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAL--------EQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 191 LNEEYQALRESNSSLTGQLAELEsdrtrRATERWLESHLLRSTMSSEsqtselDFPEPDPVMQLLRQQLLGAEEQMQDMQ 270
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELL-----RALYRLGRQPPLALLLSPE------DFLDAVRRLQYLKYLAPARREQAEELR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 271 DkcknlycELEELQHHRRTSEEEQKRLQRELKCAQNEVLRFQTSHSTQHEELKSrlctLQQKYDASQDEHSELLKVQMQL 350
Cdd:COG4942 157 A-------DLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLAR----LEKELAELAAELAELQQEAEEL 225
|
....*...
gi 319655563 351 ETELQQLR 358
Cdd:COG4942 226 EALIARLE 233
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
12-200 |
2.80e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 2.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 12 TELEELRAQVLQLVAELEETRELAGQHEDDSLE-LQGLLEDERLASAQQAEVFTKQIQQLQGELQHLREEISLLEHEK-- 88
Cdd:COG4913 262 ERYAAARERLAELEYLRAALRLWFAQRRLELLEaELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRle 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 89 --ESELKEMEQELHLAQAEIQNLRQAAADSATEHESDIASLQDDLCRLQNDLDDMERIRGDYEMEIASLRAEMELKTSEp 166
Cdd:COG4913 342 qlEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE- 420
|
170 180 190
....*....|....*....|....*....|....
gi 319655563 167 snlsisdFSGIQDELHHLRERYNLLNEEYQALRE 200
Cdd:COG4913 421 -------LRELEAEIASLERRKSNIPARLLALRD 447
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
11-223 |
6.28e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 6.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 11 ETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLE-----------DERLASAQQA-----------EVFTKQIQ 68
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQERREALQRLAEyswdeidvasaEREIAELEAElerldassddlAALEEQLE 695
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 69 QLQGELQHLREEISLLEHEK---ESELKEMEQELHLAQAEIQN----------------LRQAAADSATEH-----ESDI 124
Cdd:COG4913 696 ELEAELEELEEELDELKGEIgrlEKELEQAEEELDELQDRLEAaedlarlelralleerFAAALGDAVERElrenlEERI 775
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 125 ASLQDDLCRLQNDLDD-MERIRGDYEMEIASLRAEMElktsepsnlSISDFSGI-----QDELHHLRERY-NLLNEeyqa 197
Cdd:COG4913 776 DALRARLNRAEEELERaMRAFNREWPAETADLDADLE---------SLPEYLALldrleEDGLPEYEERFkELLNE---- 842
|
250 260
....*....|....*....|....*.
gi 319655563 198 lrESNSSLTGQLAELESDRtRRATER 223
Cdd:COG4913 843 --NSIEFVADLLSKLRRAI-REIKER 865
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
112-358 |
9.20e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 9.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 112 AAADSATEHESDIASLQDDLCRLQNDLDDMERIRGDYEmEIASLRAEMELktsepsnlsisdfsgIQDELHHLR-----E 186
Cdd:COG4913 225 EAADALVEHFDDLERAHEALEDAREQIELLEPIRELAE-RYAAARERLAE---------------LEYLRAALRlwfaqR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 187 RYNLLNEEYQALRESNSSLTGQLAELESDRTR-RATERWLESHLLrstmssESQTSELDfpepdpvmqLLRQQLLGAEEQ 265
Cdd:COG4913 289 RLELLEAELEELRAELARLEAELERLEARLDAlREELDELEAQIR------GNGGDRLE---------QLEREIERLERE 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 266 MQDMQDKCKNLYCELEELQHHRRTSEEEQKRLQRELKCAQNEVLRFQTSHSTQHEELKSRLCTLQQKYDASQDEHSELLK 345
Cdd:COG4913 354 LEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
250
....*....|...
gi 319655563 346 VQMQLETELQQLR 358
Cdd:COG4913 434 RKSNIPARLLALR 446
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
11-486 |
1.12e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 11 ETELEELRAQVLQLVAELE----ETRELAGQHEDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGELQHLREEISLLEH 86
Cdd:pfam15921 259 ELLLQQHQDRIEQLISEHEveitGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKR 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 87 EKESELKEMEQELHLAQAEIQNLRQAAADSATEHesdiASLQDDLCRLQNDLDDMERirgdyemeiaslraEMELKTSEP 166
Cdd:pfam15921 339 MYEDKIEELEKQLVLANSELTEARTERDQFSQES----GNLDDQLQKLLADLHKREK--------------ELSLEKEQN 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 167 SNLSISDfSGIQDELHHLRERYNLLNEEYQALRESNSSLTGQlAELESDRTRRATERWLESHLLRSTMSSESQTSEldfp 246
Cdd:pfam15921 401 KRLWDRD-TGNSITIDHLRRELDDRNMEVQRLEALLKAMKSE-CQGQMERQMAAIQGKNESLEKVSSLTAQLESTK---- 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 247 epdPVMQLLRQQLLGAEEQMQDMQDKCKNLYCELEELQHHRRTSEEEQKRLQR--ELKCAQNEVLRFQTSHsTQHEELKS 324
Cdd:pfam15921 475 ---EMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSrvDLKLQELQHLKNEGDH-LRNVQTEC 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 325 RLCTLQQkydASQDEHSELLKVQMQLETEL--QQLRLLRCTPVE-SQSEKELMCRLQKLQAQHQCSVNEKEQLLEVQHHL 401
Cdd:pfam15921 551 EALKLQM---AEKDKVIEILRQQIENMTQLvgQHGRTAGAMQVEkAQLEKEINDRRLELQEFKILKDKKDAKIRELEARV 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 402 HD----KLRCHESEVHRLRSMVDCLREKNEknsgihlQLQEMKGlyqfSRDELERQKHMYDQLEQDFLLCQQEL------ 471
Cdd:pfam15921 628 SDleleKVKLVNAGSERLRAVKDIKQERDQ-------LLNEVKT----SRNELNSLSEDYEVLKRNFRNKSEEMetttnk 696
|
490
....*....|....*..
gi 319655563 472 --TELKSSQSLCEENGN 486
Cdd:pfam15921 697 lkMQLKSAQSELEQTRN 713
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
10-222 |
1.29e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 10 TETELEELRAQVLQLVAELEETRelagQHEDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGELQHLREEISLLEHEKE 89
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALK----KEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 90 SELKEMEQELHLAQAEIQNLR----------QAAADSATEHESDIASLQDDLCRLQNDLDDMERIRGDYEMEIASLRAEM 159
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPlalllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 319655563 160 ELKTSEPSNLSiSDFSGIQDELHHLRERYNLLNEEYQALRESNSSLTGQLAELESDRTRRATE 222
Cdd:COG4942 181 AELEEERAALE-ALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
11-357 |
1.57e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 11 ETELEELRAQVLQLVAELEETRELAGQHEDDsLELQGLLEDERLASAQQAEvFTKQIQQLQG---ELQHLREEISLLEHE 87
Cdd:COG4717 94 QEELEELEEELEELEAELEELREELEKLEKL-LQLLPLYQELEALEAELAE-LPERLEELEErleELRELEEELEELEAE 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 88 KESELKEMEQELHLAQAEIQNLRQAAADSATEHESDIASLQDDLCRLQNDLDDMERIRGDYEMEIASLRAEMELKTSEPS 167
Cdd:COG4717 172 LAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLL 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 168 NLSISDFSGIQDELHHLRERYN-----------LLNEEYQALRESNSSLTGQLAELESDRTRRATERWLESHLLRSTMSS 236
Cdd:COG4717 252 LLIAAALLALLGLGGSLLSLILtiagvlflvlgLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLP 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 237 ESQTSELDFPEPDPVMQL--LRQQLLGAEEQM--QDMQDKCKNLY----CELEE-----LQHHRRTSEEEQKRLQRELKC 303
Cdd:COG4717 332 PDLSPEELLELLDRIEELqeLLREAEELEEELqlEELEQEIAALLaeagVEDEEelraaLEQAEEYQELKEELEELEEQL 411
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 319655563 304 AQNEVLRFQTSHSTQHEELKSRLCTLQQKYDASQDEHSELLKVQMQLETELQQL 357
Cdd:COG4717 412 EELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQL 465
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
8-149 |
3.43e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 3.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 8 SLTETELEELRAQVLQLVAELEETR----ELAGQHEDDSLELQGLLEDERLASAQQaevftkQIQQLQGELQHLRE---- 79
Cdd:COG3206 215 KLLLQQLSELESQLAEARAELAEAEarlaALRAQLGSGPDALPELLQSPVIQQLRA------QLAELEAELAELSArytp 288
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 319655563 80 ---EISLLEHEKESELKEMEQELHLAQAEIQNLRQAAADSATEHESDIASLQDDLCRLQNDLDDMERIRGDYE 149
Cdd:COG3206 289 nhpDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVE 361
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
5-155 |
3.95e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 43.80 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 5 RGLSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQgllederlASAQQAEVFTKQIQQLQGELQHLREEISLL 84
Cdd:PRK09039 46 REISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLR--------ASLSAAEAERSRLQALLAELAGAGAAAEGR 117
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 319655563 85 EHEKESELKEMEQELHLAQAEIQNLRQaaadsatehesDIASLQDDLCRLQNDLDDMERIRGDYEMEIASL 155
Cdd:PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQ-----------QIAALRRQLAALEAALDASEKRDRESQAKIADL 177
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
7-139 |
4.47e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 4.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 7 LSLTETELEELRAQVLQLVAELEETRELAGQHED------DSLELQGLLEDERLASAQQAEV---FTK---QIQQLQGEL 74
Cdd:COG3206 221 LSELESQLAEARAELAEAEARLAALRAQLGSGPDalpellQSPVIQQLRAQLAELEAELAELsarYTPnhpDVIALRAQI 300
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 319655563 75 QHLREEIsllEHEKESELKEMEQELHLAQAEIQNLRQAAADsATEHESDIASLQDDLCRLQNDLD 139
Cdd:COG3206 301 AALRAQL---QQEAQRILASLEAELEALQAREASLQAQLAQ-LEARLAELPELEAELRRLEREVE 361
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
7-158 |
4.67e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 4.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 7 LSLTETELEELRAQVLQLVAELEETRELAGQH-------EDDSLELQGLLEDERLASA-QQAEVFTKQIQQLQGELQHLR 78
Cdd:COG3883 60 LEALQAEIDKLQAEIAEAEAEIEERREELGERaralyrsGGSVSYLDVLLGSESFSDFlDRLSALSKIADADADLLEELK 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 79 EEISLLEhEKESELKEMEQELHLAQAEIQNLRQAAADSATEHESDIASLQDDLCRLQNDLDDMERIRGDYEMEIASLRAE 158
Cdd:COG3883 140 ADKAELE-AKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
11-358 |
4.85e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 4.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 11 ETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGELQHLREEISLLEHEKES 90
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 91 E------------LKEMEQELHLAQAEIQNLRQAAADSATEHESDIASLQDDLCRLQNDLDDMERIRGDYEMEIASLRAE 158
Cdd:COG1196 500 EadyegflegvkaALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPL 579
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 159 MELKTSEPSNLSIS------DFSGIQDELHHLRERY-NLLNEEYQALRESNSSLTGQLAELESDRTRRATERWLESHLLR 231
Cdd:COG1196 580 DKIRARAALAAALArgaigaAVDLVASDLREADARYyVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAG 659
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 232 STMSSESQtseldfpepdpvmQLLRQQLLGAEEQMQDMQDKCKNLYCELEELQHHRRTSEEEQKRLQRELKCAQNEVLRF 311
Cdd:COG1196 660 GSLTGGSR-------------RELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL 726
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 319655563 312 QTSHSTQHEELKSRLCTLQQKYDASQDEHSELLKVQMQLETELQQLR 358
Cdd:COG1196 727 EEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
41-363 |
6.14e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.75 E-value: 6.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 41 DSLELQGLLEDERLASAQ---QAEVFTKQIQQLQGELQHLREEISllehekeselkEMEQELHLAQAEIQNLRQAAADSA 117
Cdd:PRK11281 46 DALNKQKLLEAEDKLVQQdleQTLALLDKIDRQKEETEQLKQQLA-----------QAPAKLRQAQAELEALKDDNDEET 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 118 TEH---------ESDIASLQDDLCRLQNDLddmerirGDYEMEIASLRaemelktSEPsnlsisdfsgiqdelhhlrER- 187
Cdd:PRK11281 115 RETlstlslrqlESRLAQTLDQLQNAQNDL-------AEYNSQLVSLQ-------TQP-------------------ERa 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 188 YNLLNEEYQALRESNSSLTGQLAELESDRTRRATERWLESHLLrstmssESQTSeldfpepdpvmqlLRQQLLGAEEQMQ 267
Cdd:PRK11281 162 QAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALL------NAQND-------------LQRKSLEGNTQLQ 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 268 DmqdkcknlyceLEELQHHRRTseEEQKRLQRELKCAQNEVLRFQTSHSTQHEElksrlcTLQQKYDASQDEHSELLKVQ 347
Cdd:PRK11281 223 D-----------LLQKQRDYLT--ARIQRLEHQLQLLQEAINSKRLTLSEKTVQ------EAQSQDEAARIQANPLVAQE 283
|
330
....*....|....*.
gi 319655563 348 MQLETELQQlRLLRCT 363
Cdd:PRK11281 284 LEINLQLSQ-RLLKAT 298
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
3-358 |
6.20e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 6.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 3 KHRGLSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQglledERLASAQQAEVFTKQIQQLQGELQHLREEIS 82
Cdd:PRK03918 308 ELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELE-----KRLEELEERHELYEEAKAKKEELERLKKRLT 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 83 LLEHEK-ESELKEMEQELHLAQAEIQNLRQAAAdsatEHESDIASLQDDL------------CRLQNDLDDMERIRGDYE 149
Cdd:PRK03918 383 GLTPEKlEKELEELEKAKEEIEEEISKITARIG----ELKKEIKELKKAIeelkkakgkcpvCGRELTEEHRKELLEEYT 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 150 MEIASLRAEMELKTSEPSNL---------------SISDFSGIQDELHHLRERYNLLN--------EEYQALRESNSSLT 206
Cdd:PRK03918 459 AELKRIEKELKEIEEKERKLrkelrelekvlkkesELIKLKELAEQLKELEEKLKKYNleelekkaEEYEKLKEKLIKLK 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 207 GQLAELESDRTRRATERWLESHLLRSTMSSESQTSELDfpepDPVMQLLRQQLLGAEEQMQDMQdKCKNLYCELEELQHH 286
Cdd:PRK03918 539 GEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELL----KELEELGFESVEELEERLKELE-PFYNEYLELKDAEKE 613
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 319655563 287 RRTSEEEQKRLQRELKCAQNEVLRFQTShstqHEELKSRLCTLQQKYdaSQDEHSELLKVQMQLETELQQLR 358
Cdd:PRK03918 614 LEREEKELKKLEEELDKAFEELAETEKR----LEELRKELEELEKKY--SEEEYEELREEYLELSRELAGLR 679
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
46-394 |
6.91e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 6.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 46 QGLLEDERLASAQQAEVFTKQIQQLQGELQHLREEISLLEHEKESELKEMEQELHLAQAEiqNLRQAAADSA----TEHE 121
Cdd:pfam17380 263 QTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAE--KARQAEMDRQaaiyAEQE 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 122 SDIASLQDDLCRLQND--LDDMERIRG-DYEMEIASLRaEMELKTSEPSNLSisdfSGIQDELHHLReRYNLLNEEYQal 198
Cdd:pfam17380 341 RMAMERERELERIRQEerKRELERIRQeEIAMEISRMR-ELERLQMERQQKN----ERVRQELEAAR-KVKILEEERQ-- 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 199 resnSSLTGQLAELESDRTRRATERWLESHLLRSTMSSESQTSELDFPEPDPVMQLLRQqllgaeeqmQDMQDKCKNLYC 278
Cdd:pfam17380 413 ----RKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQ---------QEEERKRKKLEL 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 279 ELEElQHHRRTSEEEQKRLQRELKCAQNEVLRFQTSHSTQHEELKSRLCTLQQKYDASQDEHSELLKVQMQLETELQQlR 358
Cdd:pfam17380 480 EKEK-RDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQE-Q 557
|
330 340 350
....*....|....*....|....*....|....*.
gi 319655563 359 LLRCTpvESQSEKELMCRLQKLQAQHQCSVNEKEQL 394
Cdd:pfam17380 558 MRKAT--EERSRLEAMEREREMMRQIVESEKARAEY 591
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
40-285 |
1.02e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.69 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 40 DDSLELQGLLEDERLASAQQAEVfTKQIQQLQGELQHLREEISLlEHEKESELKEMEQElhlAQAEIQNLRQAAADSATE 119
Cdd:PHA02562 157 EDLLDISVLSEMDKLNKDKIREL-NQQIQTLDMKIDHIQQQIKT-YNKNIEEQRKKNGE---NIARKQNKYDELVEEAKT 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 120 HESDIASLQDDLCRLQNDLDDMERIRGDYEMEIASLRAEMELKTSE----------PSNLS-ISD----FSGIQDELHHL 184
Cdd:PHA02562 232 IKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVikmyekggvcPTCTQqISEgpdrITKIKDKLKEL 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 185 RERYNLLNEEYQALRESNSSLTGQlaelesdrTRRATErwleshlLRSTMSSESQTseldfpepdpvMQLLRQQLLGAEE 264
Cdd:PHA02562 312 QHSLEKLDTAIDELEEIMDEFNEQ--------SKKLLE-------LKNKISTNKQS-----------LITLVDKAKKVKA 365
|
250 260
....*....|....*....|.
gi 319655563 265 QMQDMQDKCKNLYCELEELQH 285
Cdd:PHA02562 366 AIEELQAEFVDNAEELAKLQD 386
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
179-482 |
1.84e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 179 DELHHLRERYNLLNEEYQALRESNSSLTGQLAELESDRTRraterwLESHLLRSTMSSESQTSELdfpepdpvmQLLRQQ 258
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE------LRLEVSELEEEIEELQKEL---------YALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 259 LLGAEEQMQDMQDKCKNLYCELEELQHHRRTSEEEQKRLQRELKCAQNEVLRFQtshsTQHEELKSRLCTLQQKYdasQD 338
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK----EELESLEAELEELEAEL---EE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 339 EHSELLKVQMQLETELQQLRLLRctpvesQSEKELMCRLQKLQAQHQCSVNEKEQLLEVQHHLHDKLrcHESEVHRLRSM 418
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAQLE------LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL--EEAELKELQAE 441
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 319655563 419 VDCLREKNEKNSGIHLQLQEmkglyqfsrdELERQKHMYDQLEQDFLLCQQELTELKSSQSLCE 482
Cdd:TIGR02168 442 LEELEEELEELQEELERLEE----------ALEELREELEEAEQALDAAERELAQLQARLDSLE 495
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
10-118 |
1.90e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 42.25 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 10 TETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLlederlasAQQAEvftKQIQQLQGELQHLREEISLLEHEKE 89
Cdd:PRK11448 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGL--------AAELE---EKQQELEAQLEQLQEKAAETSQERK 215
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 319655563 90 SELKEMEQE----LHLAQAEI-----QNLRQAA--ADSAT 118
Cdd:PRK11448 216 QKRKEITDQaakrLELSEEETrilidQQLRKAGweADSKT 255
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
13-307 |
2.42e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 41.65 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 13 ELEELRAQVLQLVAELEETRELAGQHeDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGELQHLrEEISLLEHEKESEL 92
Cdd:pfam05557 22 ELEHKRARIELEKKASALKRQLDRES-DRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYL-EALNKKLNEKESQL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 93 KEMEQELHLAQAEIQNLRQAAADSA---TEHESDIASLQDDLCRLQNDLDDMERIRGDYEMEIASLRA------------ 157
Cdd:pfam05557 100 ADAREVISCLKNELSELRRQIQRAElelQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSSLAEaeqrikelefei 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 158 ------EMELKTSEPSNLSISDFSGIQDELHHLRERYNLLNEEYQALRESNSSLTGQLAELESDRTRRATERWLESHLLR 231
Cdd:pfam05557 180 qsqeqdSEIVKNSKSELARIPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLEREEKYREEAATLELEKEKLEQ 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 232 STMSSES--QTSELDFPEPDP----VMQLLR-------------QQLLGAEEQMQDMQDKCKNLYCELEELQHHRRTSEE 292
Cdd:pfam05557 260 ELQSWVKlaQDTGLNLRSPEDlsrrIEQLQQreivlkeenssltSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKA 339
|
330
....*....|....*
gi 319655563 293 EQKRLQRELKCAQNE 307
Cdd:pfam05557 340 LVRRLQRRVLLLTKE 354
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
10-219 |
2.52e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.85 E-value: 2.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 10 TETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQQAEvftkQIQQLQGELQHLREEISLLEHEKE 89
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE----LEELAERLAEEELELEEALLAEEE 704
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 90 SELKEMEQELHLAQAEIQNLRQAAADSATEHESDIASLQDDLCRLQNDLDDMERI--RGDYEMEIASLRAEMELKtsEPS 167
Cdd:COG1196 705 EERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPpdLEELERELERLEREIEAL--GPV 782
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 319655563 168 NL-SIsdfsgiqDELHHLRERYNLLNEEYQALRESNSSLTGQLAELESDRTRR 219
Cdd:COG1196 783 NLlAI-------EEYEELEERYDFLSEQREDLEEARETLEEAIEEIDRETRER 828
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
10-686 |
5.72e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 5.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 10 TETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLED-----ERLASAQQAEVfTKQIQQLQGELQHLREEISll 84
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEElnkkiKDLGEEEQLRV-KEKIGELEAEIASLERSIA-- 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 85 ehEKESELKEMEQELHLAQAEIQNLRQAAADSATEHES---DIASLQDDLCRLQNDLDDMERIRGDYEMEIASLRAEmel 161
Cdd:TIGR02169 312 --EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEerkRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE--- 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 162 ktsepsnlsisdFSGIQDELHHLRERYNLLNEEYQALRESNSSLTGQLAELESDRTRrATERWLESHLLRSTMSSESQTS 241
Cdd:TIGR02169 387 ------------LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG-IEAKINELEEEKEDKALEIKKQ 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 242 ELDFPEPDPVMQLLRQQLLGAEEQMQDMQDKCKNLYCELEELQHHRRTSEEEQK--RLQRELKCAQNEVLRFQTSHSTQH 319
Cdd:TIGR02169 454 EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRggRAVEEVLKASIQGVHGTVAQLGSV 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 320 EE---------LKSRLCTLQQKYDASQDEHSELLKvQMQLE-------TELQQLR-----------------LLRCTP-- 364
Cdd:TIGR02169 534 GEryataievaAGNRLNNVVVEDDAVAKEAIELLK-RRKAGratflplNKMRDERrdlsilsedgvigfavdLVEFDPky 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 365 -------------VES-QSEKELMCRLQKlqaqhqcsVNEKEQLLEVQHHL---HDKLRCHESEVHRLRSMVDCLREKne 427
Cdd:TIGR02169 613 epafkyvfgdtlvVEDiEAARRLMGKYRM--------VTLEGELFEKSGAMtggSRAPRGGILFSRSEPAELQRLRER-- 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 428 knsgihlqLQEMKGLYQFSRDELERQKHMYDQLEQDFLLCQQELTELKSSQSLCEENGNcsnkcdALLARLTELQDKFKA 507
Cdd:TIGR02169 683 --------LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE------KLKERLEELEEDLSS 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 508 SQEEIGHLQMEQCELLEDQRRLQEEQGQLQEELHRLtFPQPKCGILQKSQELLSKLQD-------------------LCE 568
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALNDL-EARLSHSRIPEIQAELSKLEEevsriearlreieqklnrlTLE 827
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 569 MQLLYQNMQE--QQRKLTQNQECVLKEQLEAhkhLRGFKEShFQEVLANPQdargpksssceNKFKVLMDQLQALQVLYD 646
Cdd:TIGR02169 828 KEYLEKEIQElqEQRIDLKEQIKSIEKEIEN---LNGKKEE-LEEELEELE-----------AALRDLESRLGDLKKERD 892
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 319655563 647 TSQKQQEVLQREHGRLMEERKRLQAELQLCMEEMQVLQTQ 686
Cdd:TIGR02169 893 ELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE 932
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
97-222 |
6.61e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.14 E-value: 6.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 97 QELHLAQAEIQNLRQAAADSATEHESDIASLQDDLCRLQNDLDDMERIRGDYEMEIASLRAEME-LKTSEPSNLSISDFS 175
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKkYEEQLGNVRNNKEYE 92
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 319655563 176 GIQDELHHLRERYNLLNEEYQALRESNSSLTGQLAELESDRTRRATE 222
Cdd:COG1579 93 ALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAE 139
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
366-684 |
8.61e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 39.72 E-value: 8.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 366 ESQSEKELMCRLQKLqAQHQCSVNEKEQLLEVQHHLHDKLRCHESEVhrlrsmvdcLREKNEKNsgihlQLQEMKGLYQf 445
Cdd:pfam17380 263 QTMTENEFLNQLLHI-VQHQKAVSERQQQEKFEKMEQERLRQEKEEK---------AREVERRR-----KLEEAEKARQ- 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 446 srDELERQKHMYDQLEQDFLLCQQELTELKSSQSLCEENGNCSNKCDALLARLTELQDKFKASQEEIGHLQME-----QC 520
Cdd:pfam17380 327 --AEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQEleaarKV 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 521 ELLEDQRRLQEEQGQLQEELHRLTFPQPKCGILQKSQEllSKLQDLCEMQLLYQNMQEQQRKLTQNQECVLKEQLEAHKH 600
Cdd:pfam17380 405 KILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEE--ERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKE 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 601 LRGFKESHFQ--EVLANPQDARGPKSSSCENKFKVLMDQLQALQ-VLYDTSQKQQEVLQREHGRLMEERKRLQAELQLCM 677
Cdd:pfam17380 483 KRDRKRAEEQrrKILEKELEERKQAMIEEERKRKLLEKEMEERQkAIYEEERRREAEEERRKQQEMEERRRIQEQMRKAT 562
|
....*..
gi 319655563 678 EEMQVLQ 684
Cdd:pfam17380 563 EERSRLE 569
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
14-356 |
8.86e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.02 E-value: 8.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 14 LEELRAQVLQLVAELEETRElagqhEDDSLElqglledERLASAQQAEVFTKQIQQLQ------GELQHLREEISLLEHE 87
Cdd:PRK02224 470 IEEDRERVEELEAELEDLEE-----EVEEVE-------ERLERAEDLVEAEDRIERLEerredlEELIAERRETIEEKRE 537
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 88 KESELKEMEQELHLAQAEIQNLRQAAADSATEHESDIASLQDDLCRLQNDLDDMERIRgdyemEIASLRAEMElktseps 167
Cdd:PRK02224 538 RAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIR-----TLLAAIADAE------- 605
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 168 nlsisdfsgiqDELHHLRERynllneeyqalREsnssltgQLAELESDRTRRATERwleshllrstmssESQTSELDFPE 247
Cdd:PRK02224 606 -----------DEIERLREK-----------RE-------ALAELNDERRERLAEK-------------RERKRELEAEF 643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 248 PDPVMQLLRQQLLGAEEQMQDMQDKcknlyceLEELqhhrrtsEEEQKRLQRELKCAQNEVLRFqtshstqhEELKSRLC 327
Cdd:PRK02224 644 DEARIEEAREDKERAEEYLEQVEEK-------LDEL-------REERDDLQAEIGAVENELEEL--------EELRERRE 701
|
330 340 350
....*....|....*....|....*....|..
gi 319655563 328 TLQQKYDASQ---DEHSELLKVQMQLETELQQ 356
Cdd:PRK02224 702 ALENRVEALEalyDEAEELESMYGDLRAELRQ 733
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
13-404 |
9.98e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 39.82 E-value: 9.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 13 ELEELRAQVLQLVAELEETRELAGQHEDDSLElQGLLEDERLASAQ-QAEVFTKQIQQLQGELQHLREEISLLEHEKESE 91
Cdd:pfam12128 309 ELSAADAAVAKDRSELEALEDQHGAFLDADIE-TAAADQEQLPSWQsELENLEERLKALTGKHQDVTAKYNRRRSKIKEQ 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 92 LKEMEQELHLAQAEIqnlRQAAADSATEHESDIASLQDDLcRLQNDLDDMERIRGDYEMEIASLRAEMELKTSEPSNLSI 171
Cdd:pfam12128 388 NNRDIAGIKDKLAKI---REARDRQLAVAEDDLQALESEL-REQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELL 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 172 SDFSGIQDELHHLRerynllnEEYQALRESNSSLTGQLAELESDRTRRATERWLESHLLRSTMSSESQTSELDFPEPDPV 251
Cdd:pfam12128 464 LQLENFDERIERAR-------EEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTL 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 252 MQLLRQQLLGAEEQMQDMQDKCKNLYCELEElqhhrrTSEEEQKRLQRELKCAQNEVLRFQTSHSTQHEE-LKSRLCTLQ 330
Cdd:pfam12128 537 LHFLRKEAPDWEQSIGKVISPELLHRTDLDP------EVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEeLRERLDKAE 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319655563 331 QKYDASQDEHSELLKVQMQLETELQQLRL---------------LRCTPVESQSEKElmcRLQKLQAQHQCSVNEKEQLL 395
Cdd:pfam12128 611 EALQSAREKQAAAEEQLVQANGELEKASReetfartalknarldLRRLFDEKQSEKD---KKNKALAERKDSANERLNSL 687
|
....*....
gi 319655563 396 EVQHHLHDK 404
Cdd:pfam12128 688 EAQLKQLDK 696
|
|
| |
