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Conserved domains on  [gi|313569854|ref|NP_001186253|]
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zinc finger protein 615 isoform 1 [Homo sapiens]

Protein Classification

KRAB domain-containing zinc finger protein( domain architecture ID 12204268)

KRAB (Kruppel-associated box) domain-containing zinc finger protein (KRAB-ZFP) plays important roles in cell differentiation and organ development, and in regulating viral replication and transcription

CATH:  3.30.160.60
Gene Ontology:  GO:0003700|GO:0046872
PubMed:  22803940
SCOP:  4003583

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
KRAB smart00349
krueppel associated box;
8-68 2.17e-31

krueppel associated box;


:

Pssm-ID: 214630 [Multi-domain]  Cd Length: 61  Bit Score: 116.54  E-value: 2.17e-31
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 313569854     8 LTLEDVAVDFTWEEWQFLSPAQKDLYRDVMLENYSNLVAVGYQASKPDALSKLERGEETCT 68
Cdd:smart00349   1 VTFEDVAVYFTQEEWEQLDPAQKNLYRDVMLENYSNLVSLGFQVPKPDLISQLEQGEEPWI 61
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
325-729 7.24e-11

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 65.10  E-value: 7.24e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 325 KPHGCSVCGKAFSTKFSLTTHQKTHTGEKPYICSECGKGFIEKRR--LTAHHRTHTGEKPFICNKCG---KGFTLKNSLI 399
Cdd:COG5048   32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPleLSRHLRTHHNNPSDLNSKSLplsNSKASSSSLS 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 400 THqqTHTGEKLYTCSECGKGFSMKHCL--MVHQRTHTGEKPYK-CNECG---KGFALKSPLIRHQRThtgekpyvctecR 473
Cdd:COG5048  112 SS--SSNSNDNNLLSSHSLPPSSRDPQlpDLLSISNLRNNPLPgNNSSSvntPQSNSLHPPLPANSL------------S 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 474 KGFTMKSDLIVHQRTHTAEKPYICNDCGKGFTVKSRLIVHQRTHTGEKPYVCGECGKGFPAKIR------LMGHQRTHTG 547
Cdd:COG5048  178 KDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLsqspssLSSSDSSSSA 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 548 EKPYICNECGKGFTEKSHLNVHRRTHTG-EKPYVCSECGKGLTGKSMLIAHQRT--HTGE--KPYICNE--CGKGFTMKS 620
Cdd:COG5048  258 SESPRSSLPTASSQSSSPNESDSSSEKGfSLPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCPYslCGKLFSRND 337

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 621 TLSIHQQTHTGEKPYKC--NECDKTFRKK------TCLIQHQRFHTGKTsFACT--ECGKFSLRKNDLITHQRIHTGEKP 690
Cdd:COG5048  338 ALKRHILLHTSISPAKEklLNSSSKFSPLlnneppQSLQQYKDLKNDKK-SETLsnSCIRNFKRDSNLSLHIITHLSFRP 416

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|.
gi 313569854 691 --YKCSDCGKAFTTKSGLNVHQRKHTGERPYGCSDCGKAFA 729
Cdd:COG5048  417 ynCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRR 457
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
95-425 3.21e-05

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 47.00  E-value: 3.21e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854  95 IDDPLQHHLQNQSI---------QKSVKQCHEQNMFGNIVNQNKGHFLLKQDCDTFDLHEKPLKSNLSFENQKRSSGLKN 165
Cdd:COG5048  119 DNNLLSSHSLPPSSrdpqlpdllSISNLRNNPLPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPS 198

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 166 SAEFNRDGK-----SLFHANHKQFYTEMKFPAIAKPINKSQFIKQQRTHNI--ENAHVCSECGKAFLKLSQFIDHQRVHT 238
Cdd:COG5048  199 SSENSPLSSsysipSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSssDSSSSASESPRSSLPTASSQSSSPNES 278

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 239 GE-------KPHVCSMCGKAFSRKSRLMDHQRT--HT--ELKHYECTE--CDKTFLKKSQLNIHQKTHMGGKPYTC--SQ 303
Cdd:COG5048  279 DSssekgfsLPIKSKQCNISFSRSSPLTRHLRSvnHSgeSLKPFSCPYslCGKLFSRNDALKRHILLHTSISPAKEklLN 358

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 304 CGKAF-----IKKCRLIYHQRTHTGEKPHGCSV--CGKAFSTKFSLTTHQKTHTGEKPYicsecgkgfiekrrltahhrt 376
Cdd:COG5048  359 SSSKFspllnNEPPQSLQQYKDLKNDKKSETLSnsCIRNFKRDSNLSLHIITHLSFRPY--------------------- 417

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*....
gi 313569854 377 htgekPFICNKCGKGFTLKNSLITHQQTHTGEKLYTCSECGKGFSMKHC 425
Cdd:COG5048  418 -----NCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLDL 461
 
Name Accession Description Interval E-value
KRAB smart00349
krueppel associated box;
8-68 2.17e-31

krueppel associated box;


Pssm-ID: 214630 [Multi-domain]  Cd Length: 61  Bit Score: 116.54  E-value: 2.17e-31
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 313569854     8 LTLEDVAVDFTWEEWQFLSPAQKDLYRDVMLENYSNLVAVGYQASKPDALSKLERGEETCT 68
Cdd:smart00349   1 VTFEDVAVYFTQEEWEQLDPAQKNLYRDVMLENYSNLVSLGFQVPKPDLISQLEQGEEPWI 61
KRAB pfam01352
KRAB box; The KRAB domain (or Kruppel-associated box) is present in about a third of zinc ...
 7-48 1.16e-22

KRAB box; The KRAB domain (or Kruppel-associated box) is present in about a third of zinc finger proteins containing C2H2 fingers. The KRAB domain is found to be involved in protein-protein interactions. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B. The A box plays an important role in repression by binding to corepressors, while the B box is thought to enhance this repression brought about by the A box. KRAB-containing proteins are thought to have critical functions in cell proliferation and differentiation, apoptosis and neoplastic transformation.


Pssm-ID: 460171  Cd Length: 42  Bit Score: 90.99  E-value: 1.16e-22
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 313569854    7 SLTLEDVAVDFTWEEWQFLSPAQKDLYRDVMLENYSNLVAVG 48
Cdd:pfam01352   1 SVTFEDVAVDFTQEEWALLDPAQRNLYRDVMLENYRNLVSLG 42
KRAB_A-box cd07765
KRAB (Kruppel-associated box) domain -A box; The KRAB domain is a transcription repression ...
 8-45 1.03e-18

KRAB (Kruppel-associated box) domain -A box; The KRAB domain is a transcription repression module, found in a subgroup of the zinc finger proteins (ZFPs) of the C2H2 family, KRAB-ZFPs. KRAB-ZFPs comprise the largest group of transcriptional regulators in mammals, and are only found in tetrapods. These proteins have been shown to play important roles in cell differentiation and organ development, and in regulating viral replication and transcription. A KRAB domain may consist of an A-box, or of an A-box plus either a B-box, a divergent B-box (b), or a C-box. Only the A-box is included in this model. The A-box is needed for repression, the B- and C- boxes are not. KRAB-ZFPs have one or two KRAB domains at their amino-terminal end, and multiple C2H2 zinc finger motifs at their C-termini. Some KRAB-ZFPs also contain a SCAN domain which mediates homo- and hetero-oligomerization. The KRAB domain is a protein-protein interaction module which represses transcription through recruiting corepressors. A key mechanism appears to be the following: KRAB-AFPs tethered to DNA recruit, via their KRAB domain, the repressor KAP1 (KRAB-associated protein-1, also known as transcription intermediary factor 1 beta , KRAB-A interacting protein , and tripartite motif protein 28). The KAP1/ KRAB-AFP complex in turn recruits the heterochromatin protein 1 (HP1) family, and other chromatin modulating proteins, leading to transcriptional repression through heterochromatin formation.


Pssm-ID: 143639  Cd Length: 40  Bit Score: 79.90  E-value: 1.03e-18
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 313569854   8 LTLEDVAVDFTWEEWQFLSPAQKDLYRDVMLENYSNLV 45
Cdd:cd07765    1 VTFEDVAVYFSQEEWELLDPAQRDLYRDVMLENYENLV 38
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
325-729 7.24e-11

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 65.10  E-value: 7.24e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 325 KPHGCSVCGKAFSTKFSLTTHQKTHTGEKPYICSECGKGFIEKRR--LTAHHRTHTGEKPFICNKCG---KGFTLKNSLI 399
Cdd:COG5048   32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPleLSRHLRTHHNNPSDLNSKSLplsNSKASSSSLS 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 400 THqqTHTGEKLYTCSECGKGFSMKHCL--MVHQRTHTGEKPYK-CNECG---KGFALKSPLIRHQRThtgekpyvctecR 473
Cdd:COG5048  112 SS--SSNSNDNNLLSSHSLPPSSRDPQlpDLLSISNLRNNPLPgNNSSSvntPQSNSLHPPLPANSL------------S 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 474 KGFTMKSDLIVHQRTHTAEKPYICNDCGKGFTVKSRLIVHQRTHTGEKPYVCGECGKGFPAKIR------LMGHQRTHTG 547
Cdd:COG5048  178 KDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLsqspssLSSSDSSSSA 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 548 EKPYICNECGKGFTEKSHLNVHRRTHTG-EKPYVCSECGKGLTGKSMLIAHQRT--HTGE--KPYICNE--CGKGFTMKS 620
Cdd:COG5048  258 SESPRSSLPTASSQSSSPNESDSSSEKGfSLPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCPYslCGKLFSRND 337

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 621 TLSIHQQTHTGEKPYKC--NECDKTFRKK------TCLIQHQRFHTGKTsFACT--ECGKFSLRKNDLITHQRIHTGEKP 690
Cdd:COG5048  338 ALKRHILLHTSISPAKEklLNSSSKFSPLlnneppQSLQQYKDLKNDKK-SETLsnSCIRNFKRDSNLSLHIITHLSFRP 416

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|.
gi 313569854 691 --YKCSDCGKAFTTKSGLNVHQRKHTGERPYGCSDCGKAFA 729
Cdd:COG5048  417 ynCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRR 457
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
95-425 3.21e-05

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 47.00  E-value: 3.21e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854  95 IDDPLQHHLQNQSI---------QKSVKQCHEQNMFGNIVNQNKGHFLLKQDCDTFDLHEKPLKSNLSFENQKRSSGLKN 165
Cdd:COG5048  119 DNNLLSSHSLPPSSrdpqlpdllSISNLRNNPLPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPS 198

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 166 SAEFNRDGK-----SLFHANHKQFYTEMKFPAIAKPINKSQFIKQQRTHNI--ENAHVCSECGKAFLKLSQFIDHQRVHT 238
Cdd:COG5048  199 SSENSPLSSsysipSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSssDSSSSASESPRSSLPTASSQSSSPNES 278

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 239 GE-------KPHVCSMCGKAFSRKSRLMDHQRT--HT--ELKHYECTE--CDKTFLKKSQLNIHQKTHMGGKPYTC--SQ 303
Cdd:COG5048  279 DSssekgfsLPIKSKQCNISFSRSSPLTRHLRSvnHSgeSLKPFSCPYslCGKLFSRNDALKRHILLHTSISPAKEklLN 358

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 304 CGKAF-----IKKCRLIYHQRTHTGEKPHGCSV--CGKAFSTKFSLTTHQKTHTGEKPYicsecgkgfiekrrltahhrt 376
Cdd:COG5048  359 SSSKFspllnNEPPQSLQQYKDLKNDKKSETLSnsCIRNFKRDSNLSLHIITHLSFRPY--------------------- 417

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*....
gi 313569854 377 htgekPFICNKCGKGFTLKNSLITHQQTHTGEKLYTCSECGKGFSMKHC 425
Cdd:COG5048  418 -----NCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLDL 461
zf-H2C2_2 pfam13465
Zinc-finger double domain;
426-449 9.53e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 36.97  E-value: 9.53e-04
                          10        20
                  ....*....|....*....|....
gi 313569854  426 LMVHQRTHTGEKPYKCNECGKGFA 449
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFK 25
SUF4-like cd20908
N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), ...
 678-709 3.29e-03

N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Oryza sativa SUPPRESSOR OF FRI 4 (OsSUF4) is a C2H2-type zinc finger transcription factor which interacts with the major H3K36 methyltransferase SDG725 to promote H3K36me3 (tri-methylation at H3K9) establishment. The transcription factor OsSUF4 recognizes a specific 7-bp DNA element (5'-CGGAAAT-3'), which is contained in the promoter regions of many genes throughout the rice genome. Through interaction with OsSUF4, SDG725 is recruited to the promoters of key florigen genes, RICE FLOWERING LOCUS T1 (RFT1) and Heading date 3a (Hd3a), for H3K36 deposition to promote gene activation and rice plant flowering. OsSUF4 target genes include a number of genes involved in many biological processes. Flowering plant Arabidopsis SUF4 binds to a 15bp DNA element (5'-CCAAATTTTAAGTTT-3') within the promoter of the floral repressor gene FLOWERING LOCUS C (FLC) and recruits the FRI-C transcription activator complex to the FLC promoter. Although the DNA-binding element and target genes of AtSUF4 are different from those of OsSUF4, AtSUF4 is known to interact with the Arabidopsis H3K36 methyltransferase SDG8 (also known as ASHH2/EFS/SET8), and the methylation deposition mechanism mediated by the SUF4 transcription factor and H3K36 methyltransferase may be conserved in Arabidopsis and rice. Proteins in this family have two conserved C2H2-type zinc finger motifs at the N-terminus (included in this model), and a large proline-rich domain at the C-terminus; for OsSUF4, it has been shown that the N-terminal zinc-finger domain is responsible for DNA binding, and that the C-terminal domain interacts with SDG725.


Pssm-ID: 411020 [Multi-domain]  Cd Length: 82  Bit Score: 37.15  E-value: 3.29e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 313569854 678 LITHQRIHTgekpYKCSDCGKAFTTKSGLNVH 709
Cdd:cd20908   17 LIQHQKAKH----FKCHICHKKLYTAGGLAVH 44
 
Name Accession Description Interval E-value
KRAB smart00349
krueppel associated box;
8-68 2.17e-31

krueppel associated box;


Pssm-ID: 214630 [Multi-domain]  Cd Length: 61  Bit Score: 116.54  E-value: 2.17e-31
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 313569854     8 LTLEDVAVDFTWEEWQFLSPAQKDLYRDVMLENYSNLVAVGYQASKPDALSKLERGEETCT 68
Cdd:smart00349   1 VTFEDVAVYFTQEEWEQLDPAQKNLYRDVMLENYSNLVSLGFQVPKPDLISQLEQGEEPWI 61
KRAB pfam01352
KRAB box; The KRAB domain (or Kruppel-associated box) is present in about a third of zinc ...
 7-48 1.16e-22

KRAB box; The KRAB domain (or Kruppel-associated box) is present in about a third of zinc finger proteins containing C2H2 fingers. The KRAB domain is found to be involved in protein-protein interactions. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B. The A box plays an important role in repression by binding to corepressors, while the B box is thought to enhance this repression brought about by the A box. KRAB-containing proteins are thought to have critical functions in cell proliferation and differentiation, apoptosis and neoplastic transformation.


Pssm-ID: 460171  Cd Length: 42  Bit Score: 90.99  E-value: 1.16e-22
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 313569854    7 SLTLEDVAVDFTWEEWQFLSPAQKDLYRDVMLENYSNLVAVG 48
Cdd:pfam01352   1 SVTFEDVAVDFTQEEWALLDPAQRNLYRDVMLENYRNLVSLG 42
KRAB_A-box cd07765
KRAB (Kruppel-associated box) domain -A box; The KRAB domain is a transcription repression ...
 8-45 1.03e-18

KRAB (Kruppel-associated box) domain -A box; The KRAB domain is a transcription repression module, found in a subgroup of the zinc finger proteins (ZFPs) of the C2H2 family, KRAB-ZFPs. KRAB-ZFPs comprise the largest group of transcriptional regulators in mammals, and are only found in tetrapods. These proteins have been shown to play important roles in cell differentiation and organ development, and in regulating viral replication and transcription. A KRAB domain may consist of an A-box, or of an A-box plus either a B-box, a divergent B-box (b), or a C-box. Only the A-box is included in this model. The A-box is needed for repression, the B- and C- boxes are not. KRAB-ZFPs have one or two KRAB domains at their amino-terminal end, and multiple C2H2 zinc finger motifs at their C-termini. Some KRAB-ZFPs also contain a SCAN domain which mediates homo- and hetero-oligomerization. The KRAB domain is a protein-protein interaction module which represses transcription through recruiting corepressors. A key mechanism appears to be the following: KRAB-AFPs tethered to DNA recruit, via their KRAB domain, the repressor KAP1 (KRAB-associated protein-1, also known as transcription intermediary factor 1 beta , KRAB-A interacting protein , and tripartite motif protein 28). The KAP1/ KRAB-AFP complex in turn recruits the heterochromatin protein 1 (HP1) family, and other chromatin modulating proteins, leading to transcriptional repression through heterochromatin formation.


Pssm-ID: 143639  Cd Length: 40  Bit Score: 79.90  E-value: 1.03e-18
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 313569854   8 LTLEDVAVDFTWEEWQFLSPAQKDLYRDVMLENYSNLV 45
Cdd:cd07765    1 VTFEDVAVYFSQEEWELLDPAQRDLYRDVMLENYENLV 38
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
325-729 7.24e-11

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 65.10  E-value: 7.24e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 325 KPHGCSVCGKAFSTKFSLTTHQKTHTGEKPYICSECGKGFIEKRR--LTAHHRTHTGEKPFICNKCG---KGFTLKNSLI 399
Cdd:COG5048   32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPleLSRHLRTHHNNPSDLNSKSLplsNSKASSSSLS 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 400 THqqTHTGEKLYTCSECGKGFSMKHCL--MVHQRTHTGEKPYK-CNECG---KGFALKSPLIRHQRThtgekpyvctecR 473
Cdd:COG5048  112 SS--SSNSNDNNLLSSHSLPPSSRDPQlpDLLSISNLRNNPLPgNNSSSvntPQSNSLHPPLPANSL------------S 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 474 KGFTMKSDLIVHQRTHTAEKPYICNDCGKGFTVKSRLIVHQRTHTGEKPYVCGECGKGFPAKIR------LMGHQRTHTG 547
Cdd:COG5048  178 KDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLsqspssLSSSDSSSSA 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 548 EKPYICNECGKGFTEKSHLNVHRRTHTG-EKPYVCSECGKGLTGKSMLIAHQRT--HTGE--KPYICNE--CGKGFTMKS 620
Cdd:COG5048  258 SESPRSSLPTASSQSSSPNESDSSSEKGfSLPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCPYslCGKLFSRND 337

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 621 TLSIHQQTHTGEKPYKC--NECDKTFRKK------TCLIQHQRFHTGKTsFACT--ECGKFSLRKNDLITHQRIHTGEKP 690
Cdd:COG5048  338 ALKRHILLHTSISPAKEklLNSSSKFSPLlnneppQSLQQYKDLKNDKK-SETLsnSCIRNFKRDSNLSLHIITHLSFRP 416

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|.
gi 313569854 691 --YKCSDCGKAFTTKSGLNVHQRKHTGERPYGCSDCGKAFA 729
Cdd:COG5048  417 ynCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRR 457
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
210-614 5.16e-10

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 62.41  E-value: 5.16e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 210 NIENAHVCSECGKAFLKLSQFIDHQRVHTGEKPHVCS--MCGKAFSRKSRLMDHQRTHTELK-HYECTECDKTFLKKSQL 286
Cdd:COG5048   29 NAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSysGCDKSFSRPLELSRHLRTHHNNPsDLNSKSLPLSNSKASSS 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 287 NIHQKTHMGGKPYTCSQCGKAFIKKCRLIYHQRTHTGEKPHGCSVCGKAF-----STKFSLTTHQKTHTGEKPYIcsecg 361
Cdd:COG5048  109 SLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSvntpqSNSLHPPLPANSLSKDPSSN----- 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 362 kgfiekRRLTAHHRTHTGEKPFICNKCGKGFTLKNSLITHQQTHTGEKLYTCSECgkgFSMKHCLMVHQRTHTGEKPYKC 441
Cdd:COG5048  184 ------LSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTN---SQLSPKSLLSQSPSSLSSSDSS 254

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 442 NECGKGFALKSPLIRHQRTH----------TGEKPYVCTECRKGFTMKSDLIVHQRT--HTAE--KPYIC--NDCGKGFT 505
Cdd:COG5048  255 SSASESPRSSLPTASSQSSSpnesdsssekGFSLPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCpySLCGKLFS 334

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 506 VKSRLIVHQRTHTGEKPYVC--GECGKGFPAKIRLMGHQRTH-----TGEKPYIC--NECGKGFTEKSHLNVHRRTHTGE 576
Cdd:COG5048  335 RNDALKRHILLHTSISPAKEklLNSSSKFSPLLNNEPPQSLQqykdlKNDKKSETlsNSCIRNFKRDSNLSLHIITHLSF 414

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|
gi 313569854 577 KPYVC--SECGKGLTGKSMLIAHQRTHTGEKPYICNECGK 614
Cdd:COG5048  415 RPYNCknPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKS 454
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
95-425 3.21e-05

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 47.00  E-value: 3.21e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854  95 IDDPLQHHLQNQSI---------QKSVKQCHEQNMFGNIVNQNKGHFLLKQDCDTFDLHEKPLKSNLSFENQKRSSGLKN 165
Cdd:COG5048  119 DNNLLSSHSLPPSSrdpqlpdllSISNLRNNPLPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPS 198

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 166 SAEFNRDGK-----SLFHANHKQFYTEMKFPAIAKPINKSQFIKQQRTHNI--ENAHVCSECGKAFLKLSQFIDHQRVHT 238
Cdd:COG5048  199 SSENSPLSSsysipSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSssDSSSSASESPRSSLPTASSQSSSPNES 278

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 239 GE-------KPHVCSMCGKAFSRKSRLMDHQRT--HT--ELKHYECTE--CDKTFLKKSQLNIHQKTHMGGKPYTC--SQ 303
Cdd:COG5048  279 DSssekgfsLPIKSKQCNISFSRSSPLTRHLRSvnHSgeSLKPFSCPYslCGKLFSRNDALKRHILLHTSISPAKEklLN 358

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 304 CGKAF-----IKKCRLIYHQRTHTGEKPHGCSV--CGKAFSTKFSLTTHQKTHTGEKPYicsecgkgfiekrrltahhrt 376
Cdd:COG5048  359 SSSKFspllnNEPPQSLQQYKDLKNDKKSETLSnsCIRNFKRDSNLSLHIITHLSFRPY--------------------- 417

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*....
gi 313569854 377 htgekPFICNKCGKGFTLKNSLITHQQTHTGEKLYTCSECGKGFSMKHC 425
Cdd:COG5048  418 -----NCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLDL 461
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 631-714 1.17e-04

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 45.09  E-value: 1.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 631 GEKPYKCN--ECDKTFRKKTCLIQHqRFHTgktsfactECGKFSLRKNDLITHQRIHTGEKPYKCSDCGKAFTTKSGLNV 708
Cdd:COG5189  346 DGKPYKCPveGCNKKYKNQNGLKYH-MLHG--------HQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKY 416


                 ....*.
gi 313569854 709 HqRKHT 714
Cdd:COG5189  417 H-RKHS 421
zf-H2C2_2 pfam13465
Zinc-finger double domain;
426-449 9.53e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 36.97  E-value: 9.53e-04
                          10        20
                  ....*....|....*....|....
gi 313569854  426 LMVHQRTHTGEKPYKCNECGKGFA 449
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFK 25
zf-H2C2_2 pfam13465
Zinc-finger double domain;
677-702 1.06e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 36.97  E-value: 1.06e-03
                          10        20
                  ....*....|....*....|....*.
gi 313569854  677 DLITHQRIHTGEKPYKCSDCGKAFTT 702
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
SUF4-like cd20908
N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), ...
 678-709 3.29e-03

N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Oryza sativa SUPPRESSOR OF FRI 4 (OsSUF4) is a C2H2-type zinc finger transcription factor which interacts with the major H3K36 methyltransferase SDG725 to promote H3K36me3 (tri-methylation at H3K9) establishment. The transcription factor OsSUF4 recognizes a specific 7-bp DNA element (5'-CGGAAAT-3'), which is contained in the promoter regions of many genes throughout the rice genome. Through interaction with OsSUF4, SDG725 is recruited to the promoters of key florigen genes, RICE FLOWERING LOCUS T1 (RFT1) and Heading date 3a (Hd3a), for H3K36 deposition to promote gene activation and rice plant flowering. OsSUF4 target genes include a number of genes involved in many biological processes. Flowering plant Arabidopsis SUF4 binds to a 15bp DNA element (5'-CCAAATTTTAAGTTT-3') within the promoter of the floral repressor gene FLOWERING LOCUS C (FLC) and recruits the FRI-C transcription activator complex to the FLC promoter. Although the DNA-binding element and target genes of AtSUF4 are different from those of OsSUF4, AtSUF4 is known to interact with the Arabidopsis H3K36 methyltransferase SDG8 (also known as ASHH2/EFS/SET8), and the methylation deposition mechanism mediated by the SUF4 transcription factor and H3K36 methyltransferase may be conserved in Arabidopsis and rice. Proteins in this family have two conserved C2H2-type zinc finger motifs at the N-terminus (included in this model), and a large proline-rich domain at the C-terminus; for OsSUF4, it has been shown that the N-terminal zinc-finger domain is responsible for DNA binding, and that the C-terminal domain interacts with SDG725.


Pssm-ID: 411020 [Multi-domain]  Cd Length: 82  Bit Score: 37.15  E-value: 3.29e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 313569854 678 LITHQRIHTgekpYKCSDCGKAFTTKSGLNVH 709
Cdd:cd20908   17 LIQHQKAKH----FKCHICHKKLYTAGGLAVH 44
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
589-696 3.52e-03

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 40.45  E-value: 3.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313569854 589 TGKSMLIAHQRTHTGE----KPYICNECGKGFTMKSTLSIHQQTHTGEKPYKCN--ECDKTFRKKTCLIQHQRFHTGKTS 662
Cdd:COG5048   12 NNSVLSSTPKSTLKSLsnapRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSysGCDKSFSRPLELSRHLRTHHNNPS 91

                         90       100       110
                 ....*....|....*....|....*....|....
gi 313569854 663 FacTECGKFSLRKNDLITHQRIHTGEKPYKCSDC 696
Cdd:COG5048   92 D--LNSKSLPLSNSKASSSSLSSSSSNSNDNNLL 123
zf-H2C2_2 pfam13465
Zinc-finger double domain;
454-477 3.77e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.42  E-value: 3.77e-03
                          10        20
                  ....*....|....*....|....
gi 313569854  454 LIRHQRTHTGEKPYVCTECRKGFT 477
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFK 25
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 691-713 5.13e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 34.97  E-value: 5.13e-03
                          10        20
                  ....*....|....*....|...
gi 313569854  691 YKCSDCGKAFTTKSGLNVHQRKH 713
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-H2C2_2 pfam13465
Zinc-finger double domain;
622-644 8.61e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 34.27  E-value: 8.61e-03
                          10        20
                  ....*....|....*....|...
gi 313569854  622 LSIHQQTHTGEKPYKCNECDKTF 644
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSF 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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