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Conserved domains on  [gi|300193064|ref|NP_001177879|]
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potassium voltage-gated channel subfamily E member 3 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ISK_Channel super family cl03426
Slow voltage-gated potassium channel;
46-96 1.41e-05

Slow voltage-gated potassium channel;


The actual alignment was detected with superfamily member pfam02060:

Pssm-ID: 460432  Cd Length: 126  Bit Score: 40.89  E-value: 1.41e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 300193064   46 RRASLPGRNDNSYMYILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYI 96
Cdd:pfam02060  32 RRSPLRDDSKLEALYILMVLGFFGFFTLGIMLSYIRSKKLEHSHDPFNVYI 82
 
Name Accession Description Interval E-value
ISK_Channel pfam02060
Slow voltage-gated potassium channel;
46-96 1.41e-05

Slow voltage-gated potassium channel;


Pssm-ID: 460432  Cd Length: 126  Bit Score: 40.89  E-value: 1.41e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 300193064   46 RRASLPGRNDNSYMYILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYI 96
Cdd:pfam02060  32 RRSPLRDDSKLEALYILMVLGFFGFFTLGIMLSYIRSKKLEHSHDPFNVYI 82
 
Name Accession Description Interval E-value
ISK_Channel pfam02060
Slow voltage-gated potassium channel;
46-96 1.41e-05

Slow voltage-gated potassium channel;


Pssm-ID: 460432  Cd Length: 126  Bit Score: 40.89  E-value: 1.41e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 300193064   46 RRASLPGRNDNSYMYILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYI 96
Cdd:pfam02060  32 RRSPLRDDSKLEALYILMVLGFFGFFTLGIMLSYIRSKKLEHSHDPFNVYI 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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