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Conserved domains on  [gi|188035926|ref|NP_001120818|]
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NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2 isoform 1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NDUFA12 super family cl47913
NADH ubiquinone oxidoreductase subunit NDUFA12; This family contains the 17.2 kD subunit of ...
 23-94 7.26e-11

NADH ubiquinone oxidoreductase subunit NDUFA12; This family contains the 17.2 kD subunit of complex I (NDUFA12) and its homologs. The family also contains a second related eukaryotic protein of unknown function,.


The actual alignment was detected with superfamily member pfam05071:

Pssm-ID: 461542  Cd Length: 96  Bit Score: 55.68  E-value: 7.26e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 188035926   23 VGTDHLGNKYYyvaEYKNwrGQTIREKRIVEaanRKEVDYEAGDIPTEWEAWIRRTRKTPPTMEEILKNEKY 94
Cdd:pfam05071   3 VGEDEFGNKYY---ENKD--EELPGRRRWVI---YNDGDYDASQVPPEWHGWLHYITDDPPTEDPILQPRPW 66
 
Name Accession Description Interval E-value
NDUFA12 pfam05071
NADH ubiquinone oxidoreductase subunit NDUFA12; This family contains the 17.2 kD subunit of ...
 23-94 7.26e-11

NADH ubiquinone oxidoreductase subunit NDUFA12; This family contains the 17.2 kD subunit of complex I (NDUFA12) and its homologs. The family also contains a second related eukaryotic protein of unknown function,.


Pssm-ID: 461542  Cd Length: 96  Bit Score: 55.68  E-value: 7.26e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 188035926   23 VGTDHLGNKYYyvaEYKNwrGQTIREKRIVEaanRKEVDYEAGDIPTEWEAWIRRTRKTPPTMEEILKNEKY 94
Cdd:pfam05071   3 VGEDEFGNKYY---ENKD--EELPGRRRWVI---YNDGDYDASQVPPEWHGWLHYITDDPPTEDPILQPRPW 66
PLN03095 PLN03095
NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional
 23-97 1.34e-05

NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional


Pssm-ID: 215571  Cd Length: 115  Bit Score: 42.18  E-value: 1.34e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 188035926  23 VGTDHLGNKYYYVAEYKNWRgqtireKRIVEAANRKevDYEAGDIPTEWEAWIRRTRKTPPTMEEiLKNEKYREE 97
Cdd:PLN03095  13 VGEDEFGNKYYENPSYQSGR------HRWVEYADKD--DYNASNIPPEWHGWLHYVNDEPGELED-RTAPRYQLE 78
 
Name Accession Description Interval E-value
NDUFA12 pfam05071
NADH ubiquinone oxidoreductase subunit NDUFA12; This family contains the 17.2 kD subunit of ...
 23-94 7.26e-11

NADH ubiquinone oxidoreductase subunit NDUFA12; This family contains the 17.2 kD subunit of complex I (NDUFA12) and its homologs. The family also contains a second related eukaryotic protein of unknown function,.


Pssm-ID: 461542  Cd Length: 96  Bit Score: 55.68  E-value: 7.26e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 188035926   23 VGTDHLGNKYYyvaEYKNwrGQTIREKRIVEaanRKEVDYEAGDIPTEWEAWIRRTRKTPPTMEEILKNEKY 94
Cdd:pfam05071   3 VGEDEFGNKYY---ENKD--EELPGRRRWVI---YNDGDYDASQVPPEWHGWLHYITDDPPTEDPILQPRPW 66
PLN03095 PLN03095
NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional
 23-97 1.34e-05

NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional


Pssm-ID: 215571  Cd Length: 115  Bit Score: 42.18  E-value: 1.34e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 188035926  23 VGTDHLGNKYYYVAEYKNWRgqtireKRIVEAANRKevDYEAGDIPTEWEAWIRRTRKTPPTMEEiLKNEKYREE 97
Cdd:PLN03095  13 VGEDEFGNKYYENPSYQSGR------HRWVEYADKD--DYNASNIPPEWHGWLHYVNDEPGELED-RTAPRYQLE 78
PRK08183 PRK08183
NADH:ubiquinone oxidoreductase subunit NDUFA12;
21-86 6.72e-05

NADH:ubiquinone oxidoreductase subunit NDUFA12;


Pssm-ID: 236176 [Multi-domain]  Cd Length: 133  Bit Score: 40.74  E-value: 6.72e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188035926  21 EHVGTDHLGNKYYyvaEYKNWRGQTIREKRIV----EAanrkevdyEAGDIPTEWEAWIRRTRKTPPTME 86
Cdd:PRK08183  27 ERVGEDEFGNVYY---RTKGGKPSDGRERRWViyngYA--------EASRIPPEWHGWLHHTVDVPPTKE 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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