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Conserved domains on  [gi|160333237|ref|NP_001103808|]
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G-protein coupled receptor family C group 5 member C isoform b precursor [Mus musculus]

Protein Classification

7tmC_RAIG3_GPRC5C domain-containing protein( domain architecture ID 11607141)

7tmC_RAIG3_GPRC5C domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
7tmC_RAIG3_GPRC5C cd15277
retinoic acid-inducible orphan G-protein-coupled receptor 3; class C family of ...
47-304 1.15e-150

retinoic acid-inducible orphan G-protein-coupled receptor 3; class C family of seven-transmembrane G protein-coupled receptors, group 5, member C; Retinoic acid-inducible G-protein-coupled receptors (RAIGs), also referred to as GPCR class C group 5, are a group consisting of four orphan receptors RAIG1 (GPRC5A), RAIG2 (GPRC5B), RAIG3 (GPRC5C), and RAIG4 (GPRC5D). Unlike other members of the class C GPCRs which contain a large N-terminal extracellular domain, RAIGs have a shorter N-terminus. Thus, it is unlikely that RAIGs bind an agonist at its N-terminus domain. Instead, the agonists may bind to the seven-transmembrane domain of these receptors. In addition, RAIG2 and RAIG3 contain a cleavable signal peptide whereas RAIG1 and RAIG4 do not. Although their expression is induced by retinoic acid (vitamin A analog), their biological function is not clearly understood. To date, no ligand is known for the members of RAIG family. Three receptor types (RAIG1-3) are found in vertebrates, while RAIG4 is only present in mammals. They show distinct tissue distribution with RAIG1 being primarily expressed in the lung, RAIG2 in the brain and placenta, RAIG3 in the brain, kidney and liver, and RAIG4 in the skin. The specific function of RAIG3 is unknown; however, this protein may play a role in mediating the effects of retinoic acid on embryogenesis, differentiation, and tumorigenesis through interaction with a G-protein signaling cascade.


:

Pssm-ID: 320404  Cd Length: 250  Bit Score: 427.61  E-value: 1.15e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  47 AWGIVLEAVAGAGIITTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVLF 126
Cdd:cd15277    1 AWGIVLEAVAGAGVVTSFVLTIVLVASLPFVQDKKKKSLLGTQVFFLLGTLGLFCLVFAFIVGPNFATCASRRFLFGVLF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 127 AICFSCLVAHVLSLNFLTRKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRGGGQVSPlgnvsadsTMTSPCAIANM 206
Cdd:cd15277   81 AICFSCLLAHAVRLNFLARRNRGPRGWVIFLLALGLWLVEVIINTEWLIITIVRGNAGSAP--------VLGDPCNIANQ 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 207 DFVMALIYVMLLLLTAFLGAWPTLCGRFKRWRKHGVFVLLTTVISIAIWVVWIVMYTYGNEQHHSPTWDDPTLAIALAAN 286
Cdd:cd15277  153 DFVMALIYVMFLLLAAFITAWPALCGKYKHWRKHGAFILVTGFLSVAIWVAWIVMYVYGNQKVGQPYWDDPTLAIALVSN 232
                        250
                 ....*....|....*...
gi 160333237 287 AWTFVLFYVIPEVSQVTK 304
Cdd:cd15277  233 AWVFLFFYIIPEICQLTK 250
 
Name Accession Description Interval E-value
7tmC_RAIG3_GPRC5C cd15277
retinoic acid-inducible orphan G-protein-coupled receptor 3; class C family of ...
47-304 1.15e-150

retinoic acid-inducible orphan G-protein-coupled receptor 3; class C family of seven-transmembrane G protein-coupled receptors, group 5, member C; Retinoic acid-inducible G-protein-coupled receptors (RAIGs), also referred to as GPCR class C group 5, are a group consisting of four orphan receptors RAIG1 (GPRC5A), RAIG2 (GPRC5B), RAIG3 (GPRC5C), and RAIG4 (GPRC5D). Unlike other members of the class C GPCRs which contain a large N-terminal extracellular domain, RAIGs have a shorter N-terminus. Thus, it is unlikely that RAIGs bind an agonist at its N-terminus domain. Instead, the agonists may bind to the seven-transmembrane domain of these receptors. In addition, RAIG2 and RAIG3 contain a cleavable signal peptide whereas RAIG1 and RAIG4 do not. Although their expression is induced by retinoic acid (vitamin A analog), their biological function is not clearly understood. To date, no ligand is known for the members of RAIG family. Three receptor types (RAIG1-3) are found in vertebrates, while RAIG4 is only present in mammals. They show distinct tissue distribution with RAIG1 being primarily expressed in the lung, RAIG2 in the brain and placenta, RAIG3 in the brain, kidney and liver, and RAIG4 in the skin. The specific function of RAIG3 is unknown; however, this protein may play a role in mediating the effects of retinoic acid on embryogenesis, differentiation, and tumorigenesis through interaction with a G-protein signaling cascade.


Pssm-ID: 320404  Cd Length: 250  Bit Score: 427.61  E-value: 1.15e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  47 AWGIVLEAVAGAGIITTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVLF 126
Cdd:cd15277    1 AWGIVLEAVAGAGVVTSFVLTIVLVASLPFVQDKKKKSLLGTQVFFLLGTLGLFCLVFAFIVGPNFATCASRRFLFGVLF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 127 AICFSCLVAHVLSLNFLTRKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRGGGQVSPlgnvsadsTMTSPCAIANM 206
Cdd:cd15277   81 AICFSCLLAHAVRLNFLARRNRGPRGWVIFLLALGLWLVEVIINTEWLIITIVRGNAGSAP--------VLGDPCNIANQ 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 207 DFVMALIYVMLLLLTAFLGAWPTLCGRFKRWRKHGVFVLLTTVISIAIWVVWIVMYTYGNEQHHSPTWDDPTLAIALAAN 286
Cdd:cd15277  153 DFVMALIYVMFLLLAAFITAWPALCGKYKHWRKHGAFILVTGFLSVAIWVAWIVMYVYGNQKVGQPYWDDPTLAIALVSN 232
                        250
                 ....*....|....*...
gi 160333237 287 AWTFVLFYVIPEVSQVTK 304
Cdd:cd15277  233 AWVFLFFYIIPEICQLTK 250
7tm_3 pfam00003
7 transmembrane sweet-taste receptor of 3 GCPR; This is a domain of seven transmembrane ...
42-298 1.02e-29

7 transmembrane sweet-taste receptor of 3 GCPR; This is a domain of seven transmembrane regions that forms the C-terminus of some subclass 3 G-coupled-protein receptors. It is often associated with a downstream cysteine-rich linker domain, NCD3G pfam07562, which is the human sweet-taste receptor, and the N-terminal domain, ANF_receptor pfam01094. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness.


Pssm-ID: 459626 [Multi-domain]  Cd Length: 247  Bit Score: 115.84  E-value: 1.02e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237   42 CDRSGAWGIVLEAVAGAGIITTFVLTIILVA--SLPFVQDTKKRSLLgtqvFFLLGTLGLFCLVFACVVKPDFsTCASRR 119
Cdd:pfam00003   1 LDLSAPWGIVLEALAALGILLTLVLLVVFLLhrKTPIVKASNRSLSF----LLLLGLLLLFLLAFLFIGKPTV-TCALRR 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  120 FLFGVLFAICFSCLVAHVLSLNF-LTRKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRgggQVSPLGNVSADSTMT 198
Cdd:pfam00003  76 FLFGVGFTLCFSCLLAKTFRLVLiFRRRKPGPRGWQLLLLALGLLLVQVIILTEWLIDPPFP---EKDNLSEGKIILECE 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  199 SPCAIANMDFVMAliYVMLLLLTAFLGAWPT--LCGRFkrwrKHGVFVLLTTVISIAIWVVWIVMYTYGNeqHHSPTWDD 276
Cdd:pfam00003 153 GSTSIAFLDFVLA--YVGLLLLAGFLLAFKTrkLPDNF----NEAKFITFSMLLSVLIWVAFIPMYLYGN--KGKGTWDP 224
                         250       260
                  ....*....|....*....|...
gi 160333237  277 PTLAI-ALAANAWTFVLFYVIPE 298
Cdd:pfam00003 225 VALAIfAILASGWVLLGLYFIPK 247
MdoB COG1368
Phosphoglycerol transferase MdoB/OpgB, AlkP superfamily [Cell wall/membrane/envelope ...
91-312 5.22e-03

Phosphoglycerol transferase MdoB/OpgB, AlkP superfamily [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440979 [Multi-domain]  Cd Length: 576  Bit Score: 39.25  E-value: 5.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  91 FFLLGTLGLFC-LVFACVVKPDFSTCASRRFLFGVLFA--ICFSCLVAHVLSLNFLTRKNHgpRGWVIFTVALLLTLVEV 167
Cdd:COG1368    1 FFLLFLLLLSLrLVFLLFNFDLSLGEILQAFLYGLRFIlyLLLLLLLLLLLLLPLLFRRPK--LRWIYLLLVLLLLLLLL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 168 IINTEW-------LIITLVRGGGQVSPLGNVsadstmtspcAIANMDFVMALIYVMLLLLTAFLGAWPTLCGRFKRWRKH 240
Cdd:COG1368   79 VADILYyrffgdrLNFSDLDYLGDTGEVLGS----------LLSSYDLLLLLDLLLLLLLLLLLYRLLKKLRKSLPWRKR 148
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 160333237 241 GVFVLLTTVIsiaiwVVWIVMYTYGNEQHHSPTWDDPTLAIALAANAwTFVLFYVIPEVSQVTKPSPEQSYQ 312
Cdd:COG1368  149 LALLLLLLAL-----LLLGIRLGEDRPLNLSDAFSRNNFVNELGLNG-PYSFYDALRNNKAPATYSEEEALE 214
 
Name Accession Description Interval E-value
7tmC_RAIG3_GPRC5C cd15277
retinoic acid-inducible orphan G-protein-coupled receptor 3; class C family of ...
47-304 1.15e-150

retinoic acid-inducible orphan G-protein-coupled receptor 3; class C family of seven-transmembrane G protein-coupled receptors, group 5, member C; Retinoic acid-inducible G-protein-coupled receptors (RAIGs), also referred to as GPCR class C group 5, are a group consisting of four orphan receptors RAIG1 (GPRC5A), RAIG2 (GPRC5B), RAIG3 (GPRC5C), and RAIG4 (GPRC5D). Unlike other members of the class C GPCRs which contain a large N-terminal extracellular domain, RAIGs have a shorter N-terminus. Thus, it is unlikely that RAIGs bind an agonist at its N-terminus domain. Instead, the agonists may bind to the seven-transmembrane domain of these receptors. In addition, RAIG2 and RAIG3 contain a cleavable signal peptide whereas RAIG1 and RAIG4 do not. Although their expression is induced by retinoic acid (vitamin A analog), their biological function is not clearly understood. To date, no ligand is known for the members of RAIG family. Three receptor types (RAIG1-3) are found in vertebrates, while RAIG4 is only present in mammals. They show distinct tissue distribution with RAIG1 being primarily expressed in the lung, RAIG2 in the brain and placenta, RAIG3 in the brain, kidney and liver, and RAIG4 in the skin. The specific function of RAIG3 is unknown; however, this protein may play a role in mediating the effects of retinoic acid on embryogenesis, differentiation, and tumorigenesis through interaction with a G-protein signaling cascade.


Pssm-ID: 320404  Cd Length: 250  Bit Score: 427.61  E-value: 1.15e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  47 AWGIVLEAVAGAGIITTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVLF 126
Cdd:cd15277    1 AWGIVLEAVAGAGVVTSFVLTIVLVASLPFVQDKKKKSLLGTQVFFLLGTLGLFCLVFAFIVGPNFATCASRRFLFGVLF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 127 AICFSCLVAHVLSLNFLTRKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRGGGQVSPlgnvsadsTMTSPCAIANM 206
Cdd:cd15277   81 AICFSCLLAHAVRLNFLARRNRGPRGWVIFLLALGLWLVEVIINTEWLIITIVRGNAGSAP--------VLGDPCNIANQ 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 207 DFVMALIYVMLLLLTAFLGAWPTLCGRFKRWRKHGVFVLLTTVISIAIWVVWIVMYTYGNEQHHSPTWDDPTLAIALAAN 286
Cdd:cd15277  153 DFVMALIYVMFLLLAAFITAWPALCGKYKHWRKHGAFILVTGFLSVAIWVAWIVMYVYGNQKVGQPYWDDPTLAIALVSN 232
                        250
                 ....*....|....*...
gi 160333237 287 AWTFVLFYVIPEVSQVTK 304
Cdd:cd15277  233 AWVFLFFYIIPEICQLTK 250
7tmC_RAIG_GPRC5 cd15043
retinoic acid-inducible orphan G-protein-coupled receptors; class C family of ...
47-304 3.01e-133

retinoic acid-inducible orphan G-protein-coupled receptors; class C family of seven-transmembrane G protein-coupled receptors, group 5; Retinoic acid-inducible G-protein-coupled receptors (RAIGs), also referred to as GPCR class C group 5, are a group consisting of four orphan receptors RAIG1 (GPRC5A), RAIG2 (GPRC5B), RAIG3 (GPRC5C), and RAIG4 (GPRC5D). Unlike other members of the class C GPCRs which contain a large N-terminal extracellular domain, RAIGs have a shorter N-terminus. Thus, it is unlikely that RAIGs bind an agonist at its N-terminus domain. Instead, agonists may bind to the seven-transmembrane domain of these receptors. In addition, RAIG2 and RAIG3 contain a cleavable signal peptide whereas RAIG1 and RAIG4 do not. Although their expression is induced by retinoic acid (vitamin A analog), their biological function is not clearly understood. To date, no ligand is known for the members of RAIG family. Three receptor types (RAIG1-3) are found in vertebrates, while RAIG4 is only present in mammals. They show distinct tissue distribution with RAIG1 being primarily expressed in the lung, RAIG2 in the brain and placenta, RAIG3 in the brain, kidney and liver, and RAIG4 in the skin. RAIG1 is evolutionarily conserved from mammals to fish. RAIG1 has been to shown to act as a tumor suppressor in non-small cell lung carcinoma as well as oral squamous cell carcinoma, but it could also act as an oncogene in breast cancer, colorectal cancer, and pancreatic cancer. Studies have shown that overexpression of RAIG1 decreases intracellular cAMP levels. Moreover, knocking out RAIG1 induces the activation of the NF-kB and STAT3 signaling pathways leading to cell proliferation and resistance to apoptosis. RAIG2 (GPRC5B), a mammalian Boss (Bride of sevenless) homolog, activates obesity-associated inflammatory signaling in adipocytes, and GPRC5B knockout mice show resistance to high-fat diet-induced obesity and insulin resistance. The specific functions of RAIG3 and RAIG4 are unknown; however, they may play roles in mediating the effects of retinoic acid on embryogenesis, differentiation, and tumorigenesis through interactions with G-protein signaling pathways.


Pssm-ID: 320171  Cd Length: 248  Bit Score: 383.45  E-value: 3.01e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  47 AWGIVLEAVAGAGIITTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVLF 126
Cdd:cd15043    1 AWGIVLEAVAGAGVVTTVALMLILPILLPFVQDSNKRSMLGTQFLFLLGTLGLFGLTFAFIIGLDGSTCPTRRFLFGVLF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 127 AICFSCLVAHVLSLNFLTRKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRGGGQVSplgnvsadstMTSPCAIANM 206
Cdd:cd15043   81 AICFSCLLAHAVSLTKLVRGRKGPSGWVILGLALGLSLVQVIIAIEWLVLTMNRTNVNVF----------SELSCARRNM 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 207 DFVMALIYVMLLLLTAFLGAWPTLCGRFKRWRKHGVFVLLTTVISIAIWVVWIVMYTYGNEQHHSPTWDDPTLAIALAAN 286
Cdd:cd15043  151 DFVMALIYVMFLLALTFLMASFTLCGSFKRWKRHGAFILLTMLLSVAIWVAWITMYMLGNVLQFDRRWDDPTLAIALAAN 230
                        250
                 ....*....|....*...
gi 160333237 287 AWTFVLFYVIPEVSQVTK 304
Cdd:cd15043  231 GWVFVLFYVIPEFWLLTK 248
7tmC_RAIG2_GPRC5B cd15278
retinoic acid-inducible orphan G-protein-coupled receptor 2; class C family of ...
48-299 1.93e-82

retinoic acid-inducible orphan G-protein-coupled receptor 2; class C family of seven-transmembrane G protein-coupled receptors, group 5, member B; Retinoic acid-inducible G-protein-coupled receptors (RAIGs), also referred to as GPCR class C group 5, are a group consisting of four orphan receptors RAIG1 (GPRC5A), RAIG2 (GPRC5B), RAIG3 (GPRC5C), and RAIG4 (GPRC5D). Unlike other members of the class C GPCRs which contain a large N-terminal extracellular domain, RAIGs have a shorter N-terminus. Thus, it is unlikely that RAIGs bind an agonist at its N-terminus domain. Instead, the agonists may bind to the seven-transmembrane domain of these receptors. In addition, RAIG2 and RAIG3 contain a cleavable signal peptide whereas RAIG1 and RAIG4 do not. Although their expression is induced by retinoic acid (vitamin A analog), their biological function is not clearly understood. To date, no ligand is known for the members of RAIG family. Three receptor types (RAIG1-3) are found in vertebrates, while RAIG4 is only present in mammals. They show distinct tissue distribution with RAIG1 being primarily expressed in the lung, RAIG2 in the brain and placenta, RAIG3 in the brain, kidney and liver, and RAIG4 in the skin. RAIG2 (GPRC5B), a mammalian Boss (Bride of sevenless) homolog, has been shown to activate obesity-associated inflammatory signaling in adipocytes, and that the GPRC5B knockout mice have been shown to be resistance to high-fat diet-induced obesity and insulin resistance.


Pssm-ID: 320405  Cd Length: 244  Bit Score: 253.58  E-value: 1.93e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  48 WGIVLEAVAGAGIITTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVLFA 127
Cdd:cd15278    2 WGIVVEAVAGAGVLITLLLMLILLVRLPFIKEKEKKSPVGPHFLFLLGTLGLFGLTFAFIIQEDETICSLRRFLWGVLFA 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 128 ICFSCLVAHVLSLNFLTRKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRGGgqvsplgnvsadstmTSPCAIANMD 207
Cdd:cd15278   82 LCFSCLLAQGWRLRRLVRHGKGPSGWHLTGLALCLMLVQVIIAVEWLILTVLRDG---------------RPACQYEPMD 146
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 208 FVMALIYVMLLLLTAFLGAWPTLCGRFKRWRKHGVFVLLTTVISIAIWVVWIVMYTYGN-EQHHSPTWDDPTLAIALAAN 286
Cdd:cd15278  147 FVMALIYVMVLLVATLGLALFTLCGKFQKWKKNGICLLITCFLSVLIWVAWMTMYLYGNdELGRSDDWNDPTLAIALVAS 226
                        250
                 ....*....|...
gi 160333237 287 AWTFVLFYVIPEV 299
Cdd:cd15278  227 GWVFLIFHAIPEV 239
7tmC_RAIG1_4_GPRC5A_D cd15279
retinoic acid-inducible orphan G-protein-coupled receptors 1 and 4; class C family of ...
47-304 7.54e-81

retinoic acid-inducible orphan G-protein-coupled receptors 1 and 4; class C family of seven-transmembrane G protein-coupled receptors, group 5, member A and D; Retinoic acid-inducible G-protein-coupled receptors (RAIGs), also referred to as GPCR class C group 5, are a group consisting of four orphan receptors RAIG1 (GPRC5A), RAIG2 (GPRC5B), RAIG3 (GPRC5C), and RAIG4 (GPRC5D). Unlike other members of the class C GPCRs which contain a large N-terminal extracellular domain, RAIGs have a shorter N-terminus. Thus, it is unlikely that RAIGs bind an agonist at its N-terminus domain. Instead, the agonists may bind to the seven-transmembrane domain of these receptors. In addition, RAIG2 and RAIG3 contain a cleavable signal peptide whereas RAIG1 and RAIG4 do not. Although their expression is induced by retinoic acid (vitamin A analog), their biological function is not clearly understood. To date, no ligand is known for the members of RAIG family. Three receptor types (RAIG1-3) are found in vertebrates, while RAIG4 is only present in mammals. They show distinct tissue distribution with RAIG1 being primarily expressed in the lung, RAIG2 in the brain and placenta, RAIG3 in the brain, kidney and liver, and RAIG4 in the skin. RAIG1 is evolutionarily conserved from mammals to fish. RAIG1 has been to shown to act as a tumor suppressor in non-small cell lung carcinoma as well as oral squamous cell carcinoma, but it could also act as an oncogene in breast cancer, colorectal cancer, and pancreatic cancer. Studies have shown that overexpression of RAIG1 decreases intracellular cAMP levels. Moreover, knocking out RAIG1 induces the activation of the NF-kB and STAT3 signaling pathways leading to cell proliferation and resistance to apoptosis. The specific function of RAIG4 is unknown; however, this protein may play a role in mediating the effects of retinoic acid on embryogenesis, differentiation, and tumorigenesis through interaction with a G-protein signaling cascade.


Pssm-ID: 320406  Cd Length: 248  Bit Score: 249.68  E-value: 7.54e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  47 AWGIVLEAVAGAGIITTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVLF 126
Cdd:cd15279    1 AWGIVLETLAAAGIVVTIALILALLFLMCKVQDSNKRKMLPTQFLFLLGVLGIFGLTFAFIIELNGQTGPTRFFLFGVLF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 127 AICFSCLVAHVLSLNFLTRKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRgggqvsplGNVSADSTMTSPcaIANM 206
Cdd:cd15279   81 AICFSCLLAHASNLVKLVRGRKPFSWLVILLLAVGFSLVQVVIAIEYIVLTMVR--------TNVNVFSEMTAP--QLNE 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 207 DFVMALIYVMLLLLTAFLGAWPTLCGRFKRWRKHGVFVLLTTVISIAIWVVWIVMYTYGNEQHHSPTWDDPTLAIALAAN 286
Cdd:cd15279  151 DFVLLLIYVLFLMALTFLVSKFTFCGSCKGWKRHGAHIFVTMLFSIAIWVAWITMLLRGNPFQRNRQWDDPVLSIALVAN 230
                        250
                 ....*....|....*...
gi 160333237 287 AWTFVLFYVIPEVSQVTK 304
Cdd:cd15279  231 GWVFLLMYIVPELCLLTR 248
7tm_3 pfam00003
7 transmembrane sweet-taste receptor of 3 GCPR; This is a domain of seven transmembrane ...
42-298 1.02e-29

7 transmembrane sweet-taste receptor of 3 GCPR; This is a domain of seven transmembrane regions that forms the C-terminus of some subclass 3 G-coupled-protein receptors. It is often associated with a downstream cysteine-rich linker domain, NCD3G pfam07562, which is the human sweet-taste receptor, and the N-terminal domain, ANF_receptor pfam01094. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness.


Pssm-ID: 459626 [Multi-domain]  Cd Length: 247  Bit Score: 115.84  E-value: 1.02e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237   42 CDRSGAWGIVLEAVAGAGIITTFVLTIILVA--SLPFVQDTKKRSLLgtqvFFLLGTLGLFCLVFACVVKPDFsTCASRR 119
Cdd:pfam00003   1 LDLSAPWGIVLEALAALGILLTLVLLVVFLLhrKTPIVKASNRSLSF----LLLLGLLLLFLLAFLFIGKPTV-TCALRR 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  120 FLFGVLFAICFSCLVAHVLSLNF-LTRKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRgggQVSPLGNVSADSTMT 198
Cdd:pfam00003  76 FLFGVGFTLCFSCLLAKTFRLVLiFRRRKPGPRGWQLLLLALGLLLVQVIILTEWLIDPPFP---EKDNLSEGKIILECE 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  199 SPCAIANMDFVMAliYVMLLLLTAFLGAWPT--LCGRFkrwrKHGVFVLLTTVISIAIWVVWIVMYTYGNeqHHSPTWDD 276
Cdd:pfam00003 153 GSTSIAFLDFVLA--YVGLLLLAGFLLAFKTrkLPDNF----NEAKFITFSMLLSVLIWVAFIPMYLYGN--KGKGTWDP 224
                         250       260
                  ....*....|....*....|...
gi 160333237  277 PTLAI-ALAANAWTFVLFYVIPE 298
Cdd:pfam00003 225 VALAIfAILASGWVLLGLYFIPK 247
7tm_classC_mGluR-like cd13953
metabotropic glutamate receptor-like class C family of seven-transmembrane G protein-coupled ...
47-299 4.82e-24

metabotropic glutamate receptor-like class C family of seven-transmembrane G protein-coupled receptors superfamily; The class C GPCRs consist of glutamate receptors (mGluR1-8), the extracellular calcium-sensing receptors (caSR), the gamma-amino-butyric acid type B receptors (GABA-B), the vomeronasal type-2 pheromone receptors (V2R), the type 1 taste receptors (TAS1R), and the promiscuous L-alpha-amino acid receptor (GPRC6A), as well as several orphan receptors. Structurally, these receptors are typically composed of a large extracellular domain containing a Venus flytrap module which possesses the orthosteric agonist-binding site, a cysteine-rich domain (CRD) with the exception of GABA-B receptors, and the seven-transmembrane domains responsible for G protein activation. Moreover, the Venus flytrap module shows high structural homology with bacterial periplasmic amino acid-binding proteins, which serve as primary receptors in transport of a variety of soluble substrates such as amino acids and polysaccharides, among many others. The class C GPCRs exist as either homo- or heterodimers, which are essential for their function. The GABA-B1 and GABA-B2 receptors form a heterodimer via interactions between the N-terminal Venus flytrap modules and the C-terminal coiled-coiled domains. On the other hand, heterodimeric CaSRs and Tas1Rs and homodimeric mGluRs utilize Venus flytrap interactions and intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD), which can also acts as a molecular link to mediate the signal between the Venus flytrap and the 7TMs. Furthermore, members of the class C GPCRs bind a variety of endogenous ligands, ranging from amino acids, ions, to pheromones and sugar molecules, and play important roles in many physiological processes such as synaptic transmission, calcium homeostasis, and the sensation of sweet and umami tastes.


Pssm-ID: 320091 [Multi-domain]  Cd Length: 251  Bit Score: 100.39  E-value: 4.82e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  47 AWGIVLEAVAGAGIITTFVLTIILV--ASLPFVqdtkKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGV 124
Cdd:cd13953    1 PLAIVLLVLAALGLLLTIFIWVVFIryRNTPVV----KASNRELSYLLLFGILLCFLLAFLFLLPPSDVLCGLRRFLFGL 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 125 LFAICFSCLVAHVLSLNFL-------TRKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRGGGQVSPLGNVsadstM 197
Cdd:cd13953   77 SFTLVFSTLLVKTNRIYRIfksglrsSLRPKLLSNKSQLLLVLFLLLVQVAILIVWLILDPPKVEKVIDSDNKV-----V 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 198 TSPCAIANMDFVMALIYVMLLLLTAFLGAWPTLcgRFKRWRKHGVFVLLTTVISIAIWVVWIVMYTYGneqhhSPTWDDP 277
Cdd:cd13953  152 ELCCSTGNIGLILSLVYNILLLLICTYLAFKTR--KLPDNFNEARYIGFSSLLSLVIWIAFIPTYFTT-----SGPYRDA 224
                        250       260
                 ....*....|....*....|..
gi 160333237 278 TLAIALAANAWTFVLFYVIPEV 299
Cdd:cd13953  225 ILSFGLLLNATVLLLCLFLPKI 246
7tmC_mGluRs cd15045
metabotropic glutamate receptors, member of the class C family of seven-transmembrane G ...
47-176 2.16e-07

metabotropic glutamate receptors, member of the class C family of seven-transmembrane G protein-coupled receptors; The metabotropic glutamate receptors (mGluRs) are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group I mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to (Gi/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320173 [Multi-domain]  Cd Length: 253  Bit Score: 51.86  E-value: 2.16e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  47 AWGIVLEAVAGAGII-TTFVLTI-ILVASLPFVqdtkKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGV 124
Cdd:cd15045    1 PWAIGAMAFASLGILlTLFVLVVfVRYRDTPVV----KASGRELSYVLLAGILLSYVMTFVLVAKPSTIVCGLQRFGLGL 76
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 160333237 125 LFAICFSCLV------AHVLSLNFLTRKNHG---PRGWVIFTvaLLLTLVEVIINTEWLII 176
Cdd:cd15045   77 CFTVCYAAILtktnriARIFRLGKKSAKRPRfisPRSQLVIT--GLLVSVQVLVLAVWLIL 135
7tmC_mGluR_group1 cd15285
metabotropic glutamate receptors in group 1, member of the class C family of ...
47-262 1.82e-06

metabotropic glutamate receptors in group 1, member of the class C family of seven-transmembrane G protein-coupled receptors; Group 1 mGluRs includes mGluR1 and mGluR5, as well as their closely related invertebrate receptors. They are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group 1 mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to G(i/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320412  Cd Length: 250  Bit Score: 49.17  E-value: 1.82e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  47 AWGIVLEAVAGAGIITTFVLTIILVA--SLPFVQ-DTKKRSLLgtqvfFLLGTLGLFCLVFACVVKPDFSTCASRRFLFG 123
Cdd:cd15285    1 TEAIVAMVFACVGILATLFVTVVFIRhnDTPVVKaSTRELSYI-----ILAGILLCYASTFALLAKPSTISCYLQRILPG 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 124 VLFAICFSCLV------AHVLS---LNFLTRKnhgPRgWVIFTVALLLTL----VEVIINTEWLIITlvrgggqvsplgn 190
Cdd:cd15285   76 LSFAMIYAALVtktnriARILAgskKKILTRK---PR-FMSASAQVVITGilisVEVAIIVVMLILE------------- 138
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 191 vSADSTMTSP--------CAIANMDFVMALIYVMLLLLTAFLGAWPT--LCGRFKRWRKHGvFVLLTTVIsiaIWVVWIV 260
Cdd:cd15285  139 -PPDATLDYPtpkrvrliCNTSTLGFVVPLGFDFLLILLCTLYAFKTrnLPENFNEAKFIG-FTMYTTCV---IWLAFLP 213

                 ..
gi 160333237 261 MY 262
Cdd:cd15285  214 IY 215
7tmC_mGluRs_group2_3 cd15934
metabotropic glutamate receptors in group 2 and 3, member of the class C family of ...
47-221 6.11e-06

metabotropic glutamate receptors in group 2 and 3, member of the class C family of seven-transmembrane G protein-coupled receptors; The metabotropic glutamate receptors (mGluRs) are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. The mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group I mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to (Gi/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320600  Cd Length: 252  Bit Score: 47.61  E-value: 6.11e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  47 AWGIVLEAVAGAGII-TTFVLTIILVASLPFVQDTKKRSLlgtqVFFLLGTLGL-FCLVFACVVKPDFSTCASRRFLFGV 124
Cdd:cd15934    1 PWAIVPVVFALLGILaTLFVIVVFIRYNDTPVVKASGREL----SYVLLTGILLcYLMTFVLLAKPSVITCALRRLGLGL 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 125 LFAICFSCLvahvlslnfLTRKNHGPRgwvIFT-------------------VALLLTLVEVIINTEWLIItlvrgggqv 185
Cdd:cd15934   77 GFSICYAAL---------LTKTNRISR---IFNsgkrsakrprfispksqlvICLGLISVQLIGVLVWLVV--------- 135
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 160333237 186 splgnVSADSTMTSP--------CAIANMDFVMALIYVMLLLLT 221
Cdd:cd15934  136 -----EPPGTRIDYPrrdqvvlkCKISDSSLLISLVYNMLLIIL 174
7tmC_mGluR3 cd15448
metabotropic glutamate receptor 3 in group 2, member of the class C family of ...
47-262 1.47e-05

metabotropic glutamate receptor 3 in group 2, member of the class C family of seven-transmembrane G protein-coupled receptors; The metabotropic glutamate receptors (mGluRs) in group 2 include mGluR 2 and 3. They are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group 1 mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to G(i/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320564  Cd Length: 254  Bit Score: 46.48  E-value: 1.47e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  47 AWGIVLEAVAGAGIITTFVLTIILVA--SLPFVQDTKKRSLLgtqvFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGV 124
Cdd:cd15448    1 AWAIGPVTIACLGFICTCMVITVFIKhnNTPLVKASGRELCY----ILLFGVFLSYCMTFFFIAKPSPVICTLRRLGLGT 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 125 LFAICFSCLVAHV--LSLNFLTRKNHGPRGWVI-----FTVALLLTLVEVIINTEWLIITLVRGGGQVSPlgnvSADSTM 197
Cdd:cd15448   77 SFAVCYSALLTKTncIARIFDGVKNGAQRPKFIspssqVFICLSLILVQIVVVSVWLILEAPGTRRYTLP----EKRETV 152
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 160333237 198 TSPCAIANMDFVMALIYVMLLLLTAFLGAWPTL-CGRFKRWRKHGVFVLLTTVIsiaIWVVWIVMY 262
Cdd:cd15448  153 ILKCNVKDSSMLISLTYDVVLVILCTVYAFKTRkCPENFNEAKFIGFTMYTTCI---IWLAFLPIF 215
7tmC_mGluR_group2 cd15284
metabotropic glutamate receptors in group 2, member of the class C family of ...
47-262 3.07e-04

metabotropic glutamate receptors in group 2, member of the class C family of seven-transmembrane G protein-coupled receptors; The metabotropic glutamate receptors (mGluRs) in group 2 include mGluR 2 and 3. They are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group 1 mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to G(i/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320411  Cd Length: 254  Bit Score: 42.14  E-value: 3.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  47 AWGIVLEAVAGAGIITTFVLTIILVA--SLPFVQdTKKRSLLgtqVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGV 124
Cdd:cd15284    1 AWAIGPVTIACLGFLCTLFVIGVFIKhnNTPLVK-ASGRELC---YILLFGVFLCYCMTFIFIAKPSPAICTLRRLGLGT 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 125 LFAICFSCLVAHV--LSLNFLTRKNHGPRGWVI-----FTVALLLTLVEVIINTEWLIITLVRGGGQVSPlgnvSADSTM 197
Cdd:cd15284   77 SFAVCYSALLTKTnrIARIFSGVKDGAQRPRFIspssqVFICLALISVQLLVVSVWLLVEAPGTRRYTLP----EKRETV 152
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 160333237 198 TSPCAIANMDFVMALIYVMLLLLTAFLGAWPTL-CGRFKRWRKHGVFVLLTTVIsiaIWVVWIVMY 262
Cdd:cd15284  153 ILKCNVRDSSMLISLTYDVVLVILCTVYAFKTRkCPENFNEAKFIGFTMYTTCI---IWLAFLPIF 215
7tmC_mGluR2 cd15447
metabotropic glutamate receptor 2 in group 2, member of the class C family of ...
47-262 6.18e-04

metabotropic glutamate receptor 2 in group 2, member of the class C family of seven-transmembrane G protein-coupled receptors; The metabotropic glutamate receptors (mGluRs) in group 2 include mGluR 2 and 3. They are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group 1 mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to G(i/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320563  Cd Length: 254  Bit Score: 41.45  E-value: 6.18e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  47 AWGIVLEAVAGAGIITT-FVLTIILVASLPFVQDTKKRSLLgtqVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVL 125
Cdd:cd15447    1 AWAIGPVTISCLGILSTlFVVGVFVKNNETPVVKASGRELC---YILLLGVLLCYLMTFIFIAKPSTAVCTLRRLGLGTS 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 126 FAICFSCLVAHVlslNFLTRKNHGPRGWV--------IFTVALLLTLV--EVIINTEWLIITLVRGGGQVSPlgnvSADS 195
Cdd:cd15447   78 FAVCYSALLTKT---NRIARIFSGAKDGAqrprfispASQVAICLALIscQLLVVLIWLLVEAPGTRKETAP----ERRY 150
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 160333237 196 TMTSPCAIANMDFVMALIYVMLLLLTAFLGAWPTL-CGRFKRWRKHGVFVLLTTVIsiaIWVVWIVMY 262
Cdd:cd15447  151 VVTLKCNSRDSSMLISLTYNVLLIILCTLYAFKTRkCPENFNEAKFIGFTMYTTCI---IWLAFLPIF 215
7tmC_mGluR4 cd15452
metabotropic glutamate receptor 4 in group 3, member of the class C family of ...
48-342 9.21e-04

metabotropic glutamate receptor 4 in group 3, member of the class C family of seven-transmembrane G protein-coupled receptors; The receptors in group 3 include mGluRs 4, 6, 7, and 8. They are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group 1 mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to G(i/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320568 [Multi-domain]  Cd Length: 327  Bit Score: 41.12  E-value: 9.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  48 WGIVLEAVAGAGIITTFVLTIILVAslpfVQDTKKRSLLGTQVFFLLGTLGLFCLV--FACVVKPDFSTCASRRFLFGVL 125
Cdd:cd15452    2 WAVVPLLLAVLGIIATLFVVVTFVR----YNDTPIVKASGRELSYVLLTGIFLCYAttFLMIAEPDLGTCSLRRIFLGLG 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 126 FAICFSCLVAHVLSLNFLTRKNH---------GPRGWVIFTVALL-LTLVEVIInteWLII----TLVRGGGQVSPlgnv 191
Cdd:cd15452   78 MSISYAALLTKTNRIYRIFEQGKrsvsaprfiSPASQLVITFSLIsLQLLGVCV---WFLVdpshSVVDYEDQRTP---- 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 192 saDSTMTS---PCAIANMDFVMALIYVMLLLLTAFLGAWPT--LCGRFKRWRKHGvFVLLTTVIsiaIWVVWIVMYtYGN 266
Cdd:cd15452  151 --DPQFARgvlKCDISDLSLICLLGYSMLLMVTCTVYAIKTrgVPETFNEAKPIG-FTMYTTCI---IWLAFIPIF-FGT 223
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 160333237 267 EQHHSPTW-DDPTLAIALAANAWTFVLFYVIPEVsQVTKPSPEQSyqgdmYPTRGVGYETILKEQTGQSMFVENKAF 342
Cdd:cd15452  224 SQSAEKMYiQTTTLTISVSLSASVSLGMLYMPKV-YVILFHPEQN-----VPKRKRSLKAVVTAATMSNKFTQKGSF 294
7tmC_V2R_pheromone cd15283
vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G ...
91-176 2.49e-03

vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors; This group represents vomeronasal type-2 pheromone receptors (V2Rs). Members of the V2R family of vomeronasal GPCRs are involved in detecting protein pheromones for social and sexual cues between the same species. V2Rs and G-alpha(o) protein are coexpressed in the basal layer of the vomeronasal organ (VNO), which is the sensory organ of the accessory olfactory system present in amphibians, reptiles, and non-primate mammals such as mice and rodents, but it is non-functional or absent in humans, apes, and monkeys. On the other hand, members of the V1R receptor family and G-alpha(i2) protein are coexpressed in the apical neurons of the VNO. Activation of V1R or V2R causes activation of phospholipase pathway, producing the second messengers diacylglycerol (DAG) and IP3. However, in contrast to V1Rs, V2Rs contain the long N-terminal extracellular domain, which is believed to bind pheromones.


Pssm-ID: 320410 [Multi-domain]  Cd Length: 252  Bit Score: 39.57  E-value: 2.49e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  91 FFLLGTLgLFC----LVFacVVKPDFSTCASRRFLFGVLFAICFSCLVAH--VLSLNF-LTRKNHGPRGWVIFTVA---- 159
Cdd:cd15283   42 YLLLLSL-KLCflcsLLF--IGQPSTWTCMLRQTAFGISFVLCISCILAKtiVVVAAFkATRPGSNIMKWFGPGQQraii 118
                         90
                 ....*....|....*..
gi 160333237 160 LLLTLVEVIINTEWLII 176
Cdd:cd15283  119 FICTLVQVVICAIWLAT 135
7tmC_GPRC6A cd15281
class C of seven-transmembrane G protein-coupled receptors, subtype 6A; GRPC6A (GPCR, class C, ...
50-175 3.16e-03

class C of seven-transmembrane G protein-coupled receptors, subtype 6A; GRPC6A (GPCR, class C, group 6, subtype A) is a widely expressed amino acid-sensing GPCR that is most closely related to CaSR. GPRC6A is most potently activated by the basic amino acids L-arginine, L-lysine, and L-ornithine and less potently by small aliphatic amino acids. Moreover, the receptor can be either activated or modulated by divalent cations such as Ca2+ and Mg2+. GPRC6A is expressed in the testis, but not the ovary and specifically also binds to the osteoblast-derived hormone osteocalcin (OCN), which regulates testosterone production by the testis and male fertility independently of the hypothalamic-pituitary axis. Furthermore, GPRC6A knockout studies suggest that GRPC6A is involved in regulation of bone metabolism, male reproduction, energy homeostasis, glucose metabolism, and in activation of inflammation response, as well as prostate cancer growth and progression, among others. GPRC6A has been suggested to couple to the Gq subtype of G proteins, leading to IP3 production and intracellular calcium mobilization. GPRC6A contains a large extracellular Venus flytrap-like domain in the N-terminus, cysteine-rich domain (CRD), and seven-transmembrane (7TM) domain, which are characteristics of the class C GPCRs. The Venus flytrap-like domain shares strong sequence homology to bacterial periplasmic binding proteins and possess the orthosteric amino acid and calcium binding sites for members of the class C, including CaSR, GABA-B, GPRC6A, mGlu, and TAS1R receptors.


Pssm-ID: 320408  Cd Length: 249  Bit Score: 38.99  E-value: 3.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  50 IVLEAVAGAGIITTFVLTIILVASLPfvQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVLFAIC 129
Cdd:cd15281    4 IVLLILSALGVLLIFFISALFTKNLN--TPVVKAGGGPLCYVILLSHFGSFISTVFFIGEPSDLTCKTRQTLFGISFTLC 81
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 160333237 130 FSCLVahVLSLNFLTRKNHGPRGWVI-------FTVALLLTLVEVIINTEWLI 175
Cdd:cd15281   82 VSCIL--VKSLKILLAFSFDPKLQELlkclykpIMIVFICTGIQVIICTVWLV 132
7tmC_V2R_AA_sensing_receptor-like cd15044
vomeronasal type-2 pheromone receptors, amino acid-sensing receptors and closely related ...
47-175 3.52e-03

vomeronasal type-2 pheromone receptors, amino acid-sensing receptors and closely related proteins; member of the class C family of seven-transmembrane G protein-coupled receptors; This group is composed of vomeronasal type-2 pheromone receptors (V2Rs), a subgroup of broad-spectrum amino-acid sensing receptors including calcium-sensing receptor (CaSR) and GPRC6A, as well as their closely related proteins. Members of the V2R family of vomeronasal GPCRs are involved in detecting protein pheromones for social and sexual cues between the same species. V2Rs and G-alpha(o) protein are co-expressed in the basal layer of the vomeronasal organ (VNO), which is the sensory organ of the accessory olfactory system present in amphibians, reptiles, and non-primate mammals such as mice and rodents, but it is non-functional or absent in humans, apes, and monkeys. On the other hand, members of the V1R receptor family and G-alpha(i2) protein are co-expressed in the apical neurons of the VNO. Activation of V1R or V2R causes activation of phospholipase pathway, producing the second messengers diacylglycerol (DAG) and IP3. However, in contrast to V1Rs, V2Rs contain the long N-terminal extracellular domain, which is believed to bind pheromones. CaSR is a widely expressed GPCR that is involved in sensing small changes in extracellular levels of calcium ion to maintain a constant level of the extracellular calcium via modulating the synthesis and secretion of calcium regulating hormones, such as parathyroid hormone (PTH), in order to regulate Ca(2+)transport into or out of the extracellular fluid via kidney, intestine, and/or bone. For instance, when Ca2+ is high, CaSR downregulates PTH synthesis and secretion, leading to an increase in renal Ca2+ excretion, a decrease in intestinal Ca2+ absorption, and a reduction in release of skeletal Ca2+. GRPC6A (GPCR, class C, group 6, subtype A) is a widely expressed amino acid-sensing GPCR that is most closely related to CaSR. GPRC6A is most potently activated by the basic amino acids L-arginine, L-lysine, and L-ornithine and less potently by small aliphatic amino acids. Moreover, the receptor can be either activated or modulated by divalent cations such as Ca2+. GPRC6A is expressed in the testis, but not the ovary and specifically also binds to the osteoblast-derived hormone osteocalcin (OCN), which regulates testosterone production by the testis and male fertility independently of the hypothalamic-pituitary axis. Furthermore, GPRC6A knockout studies suggest that GRPC6A is involved in regulation of bone metabolism, male reproduction, energy homeostasis, glucose metabolism, and in activation of inflammation response, as well as prostate cancer growth and progression, among others.


Pssm-ID: 320172 [Multi-domain]  Cd Length: 251  Bit Score: 38.99  E-value: 3.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  47 AWGIVLEAVAGAGIITTFVLTIILVASL--PFVQDTKKRsllgtqvfflLGTLGLFCLV--FAC----VVKPDFSTCASR 118
Cdd:cd15044    1 PLGILLVILSILGIIFVLVVGGVFVRYRntPIVKANNRE----------LSYLILLSLFlcFSSslffIGEPQDWTCKLR 70
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 160333237 119 RFLFGVLFAICFSCLVAHVLSLNFLTR---KNHGPRGWVI---FTVALLLTLVEVIINTEWLI 175
Cdd:cd15044   71 QTMFGVSFTLCISCILTKTLKVLLAFSadkPLTQKFLMCLylpILIVFTCTGIQVVICTVWLI 133
7tmC_TAS1R1 cd15289
type 1 taste receptor subtype 1, member of the class C of seven-transmembrane G ...
83-171 4.02e-03

type 1 taste receptor subtype 1, member of the class C of seven-transmembrane G protein-coupled receptors; This group represents TAS1R1, which is a member of the type I taste receptor (TAS1R) family that belongs to the class C of G protein-coupled receptors. The functional TAS1Rs are obligatory heterodimers built from three known members, TAS1R1-3. TAS1R1 combines with TAS1R3 to form an umami taste receptor, which is responsible for the perception of savory taste, such as the food additive mono-sodium glutamate (MSG); whereas the combination of TAS1R2-TAS1R3 forms a sweet-taste receptor for sugars and D-amino acids. On the other hand, the type II taste receptors (TAS2Rs), which belong to the class A family of GPCRs, recognize bitter tasting compounds. In the case of sweet, for example, the TAS1R2-TAS1R3 heterodimer activates phospholipase C (PLC) via alpha-gustducin, a heterodimeric G protein that is involved in perception of sweet and bitter tastes. This activation leads to generation of inositol (1, 4, 5)-trisphosphate (IP3) and diacylglycerol (DAG), and consequently increases intracellular Ca2+ mobilization and activates a cation channel, TRPM5. In contrast to the TAS1R2-TAS1R3 heterodimer, TAS1R3 alone could activate adenylate cyclase leading to cAMP formation in the absence of alpha-gustducin. Each TAS1R contains a large extracellular Venus flytrap-like domain in the N-terminus, cysteine-rich domain (CRD) and seven-transmembrane (7TM) domain, which are characteristics of the class C GPCRs. The Venus flytrap-like domain shares strong sequence homology to bacterial periplasmic binding proteins and possess the orthosteric amino acid and calcium binding sites for members of the class C, including CaSR, GABA-B1, GPRC6A, mGlu, and TAS1R receptors.


Pssm-ID: 320416  Cd Length: 253  Bit Score: 38.94  E-value: 4.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  83 RSLLGTQVFFLLGTLGLFCLVFACVV-KPDFSTCASRRFLFGVLFAICFSCLVAHVLSLNFLTR-------------KNH 148
Cdd:cd15289   34 KSAGGRTCFLMLGSLAAASCSLYCHFgEPTWLACLLKQPLFSLSFTVCLSCIAVRSFQIVCIFKlasklprfyetwaKNH 113
                         90       100
                 ....*....|....*....|....*
gi 160333237 149 GPRGWVIFT--VALLLTLVEVIINT 171
Cdd:cd15289  114 GPELFILISsaVQLLISLLWLVLNP 138
7tmC_GPR158-like cd15293
orphan GPR158 and similar proteins, member of the class C family of seven-transmembrane G ...
60-224 5.19e-03

orphan GPR158 and similar proteins, member of the class C family of seven-transmembrane G protein-coupled receptors; This group includes orphan receptors GPR158, GPR158-like (also called GPR179) and similar proteins. These orphan receptors are closely related to the type B receptor for gamma-aminobutyric acid (GABA-B), which is activated by its endogenous ligand GABA, the principal inhibitory neurotransmitter. The functional GABA-B receptor is an obligatory heterodimer composed of two related subunits, GABA-B1, which is primarily involved in GABA ligand binding, and GABA-B2, which is responsible for both G-protein coupling and trafficking of the heterodimer to the plasma membrane. Activation of GABA-B couples to G(i/o)-type G proteins, which in turn modulate three major downstream effectors: adenylate cyclase, voltage-sensitive Ca2+ channels, and inwardly-rectifying K+ channels. Consequently, GABA-B receptor produces slow and sustained inhibitory responses by decreased neurotransmitter release via inhibition of Ca2+ channels and by postsynaptic hyperpolarization via the activation of K+ channels through the G-protein beta-gamma dimer. The GABA-B is expressed in both pre- and postsynaptic sites of glutamatergic and GABAergic neurons in the brain where it regulates synaptic activity. Thus, the GABA-B receptor agonist, baclofen, is used to treat muscle tightness and cramping caused by spasticity in multiple sclerosis patients. Moreover, GABA-B antagonists improves cognitive performance in mammals, while GABA-B agonists suppress cognitive behavior. In most of the class C family members, the extracellular Venus-flytrap domain in the N-terminus is connected to the seven-transmembrane (7TM) via a cysteine-rich domain (CRD). However, in the GABA-B receptor, the CRD is absent in both subunits and the Venus-flytrap ligand-binding domain is directly connected to the 7TM via a 10-15 amino acids linker, suggesting that GABA-B receptor may utilize a different activation mechanism.


Pssm-ID: 320420  Cd Length: 252  Bit Score: 38.35  E-value: 5.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  60 IITTFVLTIILVASLPFVQDTKKRSLLGTQVFFL----LGTLGLFCLVFACVVKPDFSTCASRRFLFGVLFAICFSCLVA 135
Cdd:cd15293    8 AVQAICILLCLVLALVVFRFRKVKVIKAASPILLelilFGALLLYFPVFILYFEPSVFRCILRPWFRHLGFAIVYGALIL 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 136 HV--LSLNFLTRKNHGP--RGWVIFTVALLLTLVEVIINTEWLIITLVRgggqVSPLGNVSADSTMTSPCAIANMDFVMA 211
Cdd:cd15293   88 KTyrILVVFRSRSARRVhlTDRDLLKRLGLIVLVVLGYLAAWTAVNPPN----VEVGLTLTSSGLKFNVCSLDWWDYVMA 163
                        170
                 ....*....|...
gi 160333237 212 LIYVMLLLLTAFL 224
Cdd:cd15293  164 IAELLFLLWGVYL 176
MdoB COG1368
Phosphoglycerol transferase MdoB/OpgB, AlkP superfamily [Cell wall/membrane/envelope ...
91-312 5.22e-03

Phosphoglycerol transferase MdoB/OpgB, AlkP superfamily [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440979 [Multi-domain]  Cd Length: 576  Bit Score: 39.25  E-value: 5.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  91 FFLLGTLGLFC-LVFACVVKPDFSTCASRRFLFGVLFA--ICFSCLVAHVLSLNFLTRKNHgpRGWVIFTVALLLTLVEV 167
Cdd:COG1368    1 FFLLFLLLLSLrLVFLLFNFDLSLGEILQAFLYGLRFIlyLLLLLLLLLLLLLPLLFRRPK--LRWIYLLLVLLLLLLLL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 168 IINTEW-------LIITLVRGGGQVSPLGNVsadstmtspcAIANMDFVMALIYVMLLLLTAFLGAWPTLCGRFKRWRKH 240
Cdd:COG1368   79 VADILYyrffgdrLNFSDLDYLGDTGEVLGS----------LLSSYDLLLLLDLLLLLLLLLLLYRLLKKLRKSLPWRKR 148
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 160333237 241 GVFVLLTTVIsiaiwVVWIVMYTYGNEQHHSPTWDDPTLAIALAANAwTFVLFYVIPEVSQVTKPSPEQSYQ 312
Cdd:COG1368  149 LALLLLLLAL-----LLLGIRLGEDRPLNLSDAFSRNNFVNELGLNG-PYSFYDALRNNKAPATYSEEEALE 214
7tmC_V2R-like cd15280
vomeronasal type-2 receptor-like proteins, member of the class C family of seven-transmembrane ...
47-176 5.25e-03

vomeronasal type-2 receptor-like proteins, member of the class C family of seven-transmembrane G protein-coupled receptors; This group represents vomeronasal type-2 receptor-like proteins that are closely related to the V2R family of vomeronasal GPCRs. Members of the V2R family of vomeronasal GPCRs are involved in detecting protein pheromones for social and sexual cues between the same species. V2Rs and G-alpha(o) protein are coexpressed in the basal layer of the vomeronasal organ (VNO), which is the sensory organ of the accessory olfactory system present in amphibians, reptiles, and non-primate mammals such as mice and rodents, but it is non-functional or absent in humans, apes, and monkeys. On the other hand, members of the V1R receptor family and G-alpha(i2) protein are co-expressed in the apical neurons of the VNO. Activation of V1R or V2R causes activation of phospholipase pathway, generating the secondary messengers diacylglycerol (DAG) and IP3. However, in contrast to V1Rs, V2Rs contain the long N-terminal extracellular domain, which is believed to bind pheromones. Human V2R1-like protein, also known as putative calcium-sensing receptor-like 1 (CASRL1), is not included here because it is a nonfunctional pseudogene.


Pssm-ID: 320407 [Multi-domain]  Cd Length: 253  Bit Score: 38.61  E-value: 5.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  47 AWGIVLEAVAGAGIITTFVLTIILVASL--PFVQdTKKRSLLGTQVFFLLGTLgLFCLVFacVVKPDFSTCASRRFLFGV 124
Cdd:cd15280    1 ALGITLIALSIFGALVVLAVTVVYIMHRhtPLVK-ANDRELSFLIQMSLVITF-LTSILF--IGKPENWSCMARQITLAL 76
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 160333237 125 LFAICFSCLVAHVLSLNFLTRKNHGPRGWVIFT------VALLLTLVEVIINTEWLII 176
Cdd:cd15280   77 GFSLCLSSILGKTISLFLRYRASKSETRLDSMHpiyqkiIVLICVLIEVGICTAYLIL 134
7tmC_mGluR6 cd15453
metabotropic glutamate receptor 6 in group 3, member of the class C family of ...
48-312 7.81e-03

metabotropic glutamate receptor 6 in group 3, member of the class C family of seven-transmembrane G protein-coupled receptors; The receptors in group 3 include mGluRs 4, 6, 7, and 8. They are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group 1 mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to G(i/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320569 [Multi-domain]  Cd Length: 273  Bit Score: 38.09  E-value: 7.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237  48 WGI--VLEAVAGAGIITTFVLTIILVASLPFVQDTKKRsllgTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVL 125
Cdd:cd15453    2 WAAppLLLAVLGILATTTVVITFVRFNNTPIVRASGRE----LSYVLLTGIFLIYAITFLMVAEPGAAVCAFRRLFLGLG 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 126 FAICFSCLVA---HVLSLNFLTRKNHGPRGWVIFTVALLLTL----VEVIINTEWLiitlvrggGQVSPLGNVSADSTMT 198
Cdd:cd15453   78 TTLSYSALLTktnRIYRIFEQGKRSVTPPPFISPTSQLVITFsltsLQVVGVIAWL--------GAQPPHSVIDYEEQRT 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333237 199 S---------PCAIANMDFVMALIYVMLLLLTAFLGAWPT--LCGRFKRWRKHGvFVLLTTVIsiaIWVVWIVMYtYGNE 267
Cdd:cd15453  150 VdpeqargvlKCDMSDLSLIGCLGYSLLLMVTCTVYAIKArgVPETFNEAKPIG-FTMYTTCI---IWLAFVPIF-FGTA 224
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 160333237 268 QHHSPTW-DDPTLAIALAANAWTFVLFYVIPEVsQVTKPSPEQSYQ 312
Cdd:cd15453  225 QSAEKIYiQTTTLTVSLSLSASVSLGMLYVPKT-YVILFHPEQNVQ 269
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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