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Conserved domains on  [gi|2462538794|ref|XP_054231334|]
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large ribosomal subunit protein mL52 isoform X3 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MRPL52 super family cl40015
Mitoribosomal protein mL52; Members of this family include the mamalian mitoribosomal proteins ...
 56-94 1.80e-08

Mitoribosomal protein mL52; Members of this family include the mamalian mitoribosomal proteins mL52 which is found in the 39S subunit. The mL52 has no homologs in yeast.


The actual alignment was detected with superfamily member pfam18699:

Pssm-ID: 465836  Cd Length: 91  Bit Score: 47.58  E-value: 1.80e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2462538794  56 RRVVLLSQEMDAGLQAWQLRQ-QKLQEEQRKQENALKPKG 94
Cdd:pfam18699  52 KKIVKLSSEVDEAEERYKRKQeEEEEEIQKIIDNKLKPKG 91
 
Name Accession Description Interval E-value
MRPL52 pfam18699
Mitoribosomal protein mL52; Members of this family include the mamalian mitoribosomal proteins ...
 56-94 1.80e-08

Mitoribosomal protein mL52; Members of this family include the mamalian mitoribosomal proteins mL52 which is found in the 39S subunit. The mL52 has no homologs in yeast.


Pssm-ID: 465836  Cd Length: 91  Bit Score: 47.58  E-value: 1.80e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2462538794  56 RRVVLLSQEMDAGLQAWQLRQ-QKLQEEQRKQENALKPKG 94
Cdd:pfam18699  52 KKIVKLSSEVDEAEERYKRKQeEEEEEIQKIIDNKLKPKG 91
 
Name Accession Description Interval E-value
MRPL52 pfam18699
Mitoribosomal protein mL52; Members of this family include the mamalian mitoribosomal proteins ...
 56-94 1.80e-08

Mitoribosomal protein mL52; Members of this family include the mamalian mitoribosomal proteins mL52 which is found in the 39S subunit. The mL52 has no homologs in yeast.


Pssm-ID: 465836  Cd Length: 91  Bit Score: 47.58  E-value: 1.80e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2462538794  56 RRVVLLSQEMDAGLQAWQLRQ-QKLQEEQRKQENALKPKG 94
Cdd:pfam18699  52 KKIVKLSSEVDEAEERYKRKQeEEEEEIQKIIDNKLKPKG 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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