NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2462586067|ref|XP_054182177|]
View 

serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X25 [Homo sapiens]

Protein Classification

SAPS family protein( domain architecture ID 10517350)

SAPS (SIT4-associating proteins) family protein

Gene Ontology:  GO:0019888|GO:0043666
PubMed:  8649382

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SAPS pfam04499
SIT4 phosphatase-associated protein; This family includes a conserved region from a group of ...
 196-600 2.03e-159

SIT4 phosphatase-associated protein; This family includes a conserved region from a group of yeast proteins that associate with the SIT4 phosphatase. This association is required for SIT4's role in G1 cyclin transcription and for bud formation. This family also includes homologous regions from other eukaryotes.


:

Pssm-ID: 398279  Cd Length: 383  Bit Score: 475.19  E-value: 2.03e-159
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  196 IGNLIARKTEQVITFLKKKDKFISLVLKHIGTSALMDLLLRLVSCVEPaGLRQDVLHWLNEEKVIQRLVELIHPSQDEDR 275
Cdd:pfam04499    1 NENLLDRKTDQMIEFIRKQENFVDKFLKHIDTPAIMDLLLKLISTDKP-ELPTGVIEWLNEQNLIPKLLDLLSPSYDEDI 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  276 QSNASQTLCDIVRLGRDQGSQLQEALEPDPLLTALESQDCVEQLLKNMFDGdRTESCLVSGTQVLLTLLETRRVGTEGLV 355
Cdd:pfam04499   80 QSNASDFLKAIITISRNAPLQLQSSIGPNELTRELVSEESVEKLLDNMLKG-KSGSALVNGVGIIIELIRKNNSDYDPVQ 158

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  356 DSFSQGLERSYAVSSSV-----LHGIEPRLKDFHQLLLNPPKKKAILTTIGVLEEPLGNARLHGARLMAALLHTNTPSIN 430
Cdd:pfam04499  159 LLYTTLEEHPPSDRDPIylghlLRAFSPHLPDFHQLLLDPPKDSPLQTTLGVLIEPLGFERFKIVELIAELLHCSNMSLL 238

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  431 QE---------LCRLNTMDLLLDLFFKYTWNNFLHFQVELCIAAILshaareerteasgsesrvepphengNRSLETPQp 501
Cdd:pfam04499  239 NEkkgeklkikLVDLGIIPTILDLFFKYPWNNFLHNVVEDIIQQIL-------------------------NGPMDFSY- 292

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  502 aaslpDNTMVTHLFQKCCLVQRILEAWEANDHTQAAGGMRRGNMGHLTRIANAVVQNLERGPVQTHISEVIRGLpadCRG 581
Cdd:pfam04499  293 -----NSFLVVDLFTDCNLTQRILEGQKESDRFQAEKGPRLGYMGHLTLIAEEVVKFSEKYPPELISPDILEIL---ENE 364

                          410
                   ....*....|....*....
gi 2462586067  582 RWESFVEETLTETNRRNTV 600
Cdd:pfam04499  365 EWEEYVEETLEETRERYNV 383
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 832-1022 1.82e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 1.82e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  832 ESGPRCSSPVDTECSHAEGSRSQGPEKAFSPASPCAWNVCVTRKAPllasdssssggshsedgdqkAASAMDAVSRGPGR 911
Cdd:PHA03247  2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGP--------------------ARPARPPTTAGPPA 2768

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  912 EAPPLPTVARTEEAVGRVGCADSRLLSPACPAPKEVTAAPAVAVPPEAtvAITTALSKAGPaIPTPAVSSALAVAVPLGP 991
Cdd:PHA03247  2769 PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAA--ALPPAASPAGP-LPPPTSAQPTAPPPPPGP 2845

                          170       180       190
                   ....*....|....*....|....*....|.
gi 2462586067  992 IMAVTAAPAMVATLGTVTKDGKTDAPPEGAA 1022
Cdd:PHA03247  2846 PPPSLPLGGSVAPGGDVRRRPPSRSPAAKPA 2876
 
Name Accession Description Interval E-value
SAPS pfam04499
SIT4 phosphatase-associated protein; This family includes a conserved region from a group of ...
 196-600 2.03e-159

SIT4 phosphatase-associated protein; This family includes a conserved region from a group of yeast proteins that associate with the SIT4 phosphatase. This association is required for SIT4's role in G1 cyclin transcription and for bud formation. This family also includes homologous regions from other eukaryotes.


Pssm-ID: 398279  Cd Length: 383  Bit Score: 475.19  E-value: 2.03e-159
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  196 IGNLIARKTEQVITFLKKKDKFISLVLKHIGTSALMDLLLRLVSCVEPaGLRQDVLHWLNEEKVIQRLVELIHPSQDEDR 275
Cdd:pfam04499    1 NENLLDRKTDQMIEFIRKQENFVDKFLKHIDTPAIMDLLLKLISTDKP-ELPTGVIEWLNEQNLIPKLLDLLSPSYDEDI 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  276 QSNASQTLCDIVRLGRDQGSQLQEALEPDPLLTALESQDCVEQLLKNMFDGdRTESCLVSGTQVLLTLLETRRVGTEGLV 355
Cdd:pfam04499   80 QSNASDFLKAIITISRNAPLQLQSSIGPNELTRELVSEESVEKLLDNMLKG-KSGSALVNGVGIIIELIRKNNSDYDPVQ 158

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  356 DSFSQGLERSYAVSSSV-----LHGIEPRLKDFHQLLLNPPKKKAILTTIGVLEEPLGNARLHGARLMAALLHTNTPSIN 430
Cdd:pfam04499  159 LLYTTLEEHPPSDRDPIylghlLRAFSPHLPDFHQLLLDPPKDSPLQTTLGVLIEPLGFERFKIVELIAELLHCSNMSLL 238

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  431 QE---------LCRLNTMDLLLDLFFKYTWNNFLHFQVELCIAAILshaareerteasgsesrvepphengNRSLETPQp 501
Cdd:pfam04499  239 NEkkgeklkikLVDLGIIPTILDLFFKYPWNNFLHNVVEDIIQQIL-------------------------NGPMDFSY- 292

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  502 aaslpDNTMVTHLFQKCCLVQRILEAWEANDHTQAAGGMRRGNMGHLTRIANAVVQNLERGPVQTHISEVIRGLpadCRG 581
Cdd:pfam04499  293 -----NSFLVVDLFTDCNLTQRILEGQKESDRFQAEKGPRLGYMGHLTLIAEEVVKFSEKYPPELISPDILEIL---ENE 364

                          410
                   ....*....|....*....
gi 2462586067  582 RWESFVEETLTETNRRNTV 600
Cdd:pfam04499  365 EWEEYVEETLEETRERYNV 383
PHA03247 PHA03247
large tegument protein UL36; Provisional
 832-1022 1.82e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 1.82e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  832 ESGPRCSSPVDTECSHAEGSRSQGPEKAFSPASPCAWNVCVTRKAPllasdssssggshsedgdqkAASAMDAVSRGPGR 911
Cdd:PHA03247  2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGP--------------------ARPARPPTTAGPPA 2768

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  912 EAPPLPTVARTEEAVGRVGCADSRLLSPACPAPKEVTAAPAVAVPPEAtvAITTALSKAGPaIPTPAVSSALAVAVPLGP 991
Cdd:PHA03247  2769 PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAA--ALPPAASPAGP-LPPPTSAQPTAPPPPPGP 2845

                          170       180       190
                   ....*....|....*....|....*....|.
gi 2462586067  992 IMAVTAAPAMVATLGTVTKDGKTDAPPEGAA 1022
Cdd:PHA03247  2846 PPPSLPLGGSVAPGGDVRRRPPSRSPAAKPA 2876
 
Name Accession Description Interval E-value
SAPS pfam04499
SIT4 phosphatase-associated protein; This family includes a conserved region from a group of ...
 196-600 2.03e-159

SIT4 phosphatase-associated protein; This family includes a conserved region from a group of yeast proteins that associate with the SIT4 phosphatase. This association is required for SIT4's role in G1 cyclin transcription and for bud formation. This family also includes homologous regions from other eukaryotes.


Pssm-ID: 398279  Cd Length: 383  Bit Score: 475.19  E-value: 2.03e-159
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  196 IGNLIARKTEQVITFLKKKDKFISLVLKHIGTSALMDLLLRLVSCVEPaGLRQDVLHWLNEEKVIQRLVELIHPSQDEDR 275
Cdd:pfam04499    1 NENLLDRKTDQMIEFIRKQENFVDKFLKHIDTPAIMDLLLKLISTDKP-ELPTGVIEWLNEQNLIPKLLDLLSPSYDEDI 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  276 QSNASQTLCDIVRLGRDQGSQLQEALEPDPLLTALESQDCVEQLLKNMFDGdRTESCLVSGTQVLLTLLETRRVGTEGLV 355
Cdd:pfam04499   80 QSNASDFLKAIITISRNAPLQLQSSIGPNELTRELVSEESVEKLLDNMLKG-KSGSALVNGVGIIIELIRKNNSDYDPVQ 158

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  356 DSFSQGLERSYAVSSSV-----LHGIEPRLKDFHQLLLNPPKKKAILTTIGVLEEPLGNARLHGARLMAALLHTNTPSIN 430
Cdd:pfam04499  159 LLYTTLEEHPPSDRDPIylghlLRAFSPHLPDFHQLLLDPPKDSPLQTTLGVLIEPLGFERFKIVELIAELLHCSNMSLL 238

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  431 QE---------LCRLNTMDLLLDLFFKYTWNNFLHFQVELCIAAILshaareerteasgsesrvepphengNRSLETPQp 501
Cdd:pfam04499  239 NEkkgeklkikLVDLGIIPTILDLFFKYPWNNFLHNVVEDIIQQIL-------------------------NGPMDFSY- 292

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  502 aaslpDNTMVTHLFQKCCLVQRILEAWEANDHTQAAGGMRRGNMGHLTRIANAVVQNLERGPVQTHISEVIRGLpadCRG 581
Cdd:pfam04499  293 -----NSFLVVDLFTDCNLTQRILEGQKESDRFQAEKGPRLGYMGHLTLIAEEVVKFSEKYPPELISPDILEIL---ENE 364

                          410
                   ....*....|....*....
gi 2462586067  582 RWESFVEETLTETNRRNTV 600
Cdd:pfam04499  365 EWEEYVEETLEETRERYNV 383
PHA03247 PHA03247
large tegument protein UL36; Provisional
 832-1022 1.82e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 1.82e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  832 ESGPRCSSPVDTECSHAEGSRSQGPEKAFSPASPCAWNVCVTRKAPllasdssssggshsedgdqkAASAMDAVSRGPGR 911
Cdd:PHA03247  2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGP--------------------ARPARPPTTAGPPA 2768

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  912 EAPPLPTVARTEEAVGRVGCADSRLLSPACPAPKEVTAAPAVAVPPEAtvAITTALSKAGPaIPTPAVSSALAVAVPLGP 991
Cdd:PHA03247  2769 PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAA--ALPPAASPAGP-LPPPTSAQPTAPPPPPGP 2845

                          170       180       190
                   ....*....|....*....|....*....|.
gi 2462586067  992 IMAVTAAPAMVATLGTVTKDGKTDAPPEGAA 1022
Cdd:PHA03247  2846 PPPSLPLGGSVAPGGDVRRRPPSRSPAAKPA 2876
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
861-1023 1.36e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 49.10  E-value: 1.36e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  861 SPASPCAWNVCVTRKA--PLLASDSSSSGGSHSEDGDQKAASAMDAVSRGPGREAPPLPTVARTEEAVGRVGCADSRLLS 938
Cdd:PRK12323   373 GPATAAAAPVAQPAPAaaAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAP 452

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  939 PACPAPKEVTAAPAVAVPPEATVAITTALSKAGPAIPTPAVSSA-----LAVAVPLGPIMAVTAAPAMVATLGTvTKDGK 1013
Cdd:PRK12323   453 APAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPppweeLPPEFASPAPAQPDAAPAGWVAESI-PDPAT 531

                          170
                   ....*....|
gi 2462586067 1014 TDAPPEGAAL 1023
Cdd:PRK12323   532 ADPDDAFETL 541
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 896-1000 5.80e-05

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 46.01  E-value: 5.80e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  896 QKAASAMDAVSRGPGREAPPLPTVARTEEAVGRVGCAdsrllsPACPAPKEVTAAPAVAVPPEATVAITTALSKAGPAIP 975
Cdd:PHA02682    63 QSRLKANSACMQRPSGQSPLAPSPACAAPAPACPACA------PAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARP 136

                           90       100
                   ....*....|....*....|....*
gi 2462586067  976 TPAVSSALAVAVPLGPIMAVTAAPA 1000
Cdd:PHA02682   137 APACPPSTRQCPPAPPLPTPKPAPA 161
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
904-1004 7.21e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 43.68  E-value: 7.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  904 AVSRGPGREAPPLPTVARTEEAVGRVgcADSRLLSPACPAPKEVTAAPAVAVPPEATVAITTALSKAGPAIPTPAVSSAL 983
Cdd:PRK07003   361 AVTGGGAPGGGVPARVAGAVPAPGAR--AAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADR 438

                           90       100
                   ....*....|....*....|.
gi 2462586067  984 AVAVPLGPIMAVTAAPAMVAT 1004
Cdd:PRK07003   439 GDDAADGDAPVPAKANARASA 459
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
898-1022 1.26e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.91  E-value: 1.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  898 AASAMDAVSRGPGREAPPlptVARTEEAVGRVGCADSRLLSPACPAPKEVTAAPAVAVPPEATVAITTALSKAGPAIPTP 977
Cdd:PRK07003   409 ALAPKAAAAAAATRAEAP---PAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAP 485

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 2462586067  978 AvSSALAVAVPLGPIMAVTAAPAMVATLGTVTKDGKTDAPPEGAA 1022
Cdd:PRK07003   486 P-DAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPA 529
PHA03247 PHA03247
large tegument protein UL36; Provisional
 899-1026 1.57e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 1.57e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  899 ASAMDAVSRGPGREAPPLPTVARTEEAVGRvgcADSRLLSPACPApkevtaAPAVAVPPEATVAITTALSKAGPAIPTPA 978
Cdd:PHA03247  2696 TSLADPPPPPPTPEPAPHALVSATPLPPGP---AAARQASPALPA------APAPPAVPAGPATPGGPARPARPPTTAGP 2766

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 2462586067  979 VSSALAVAVPLGPIMAVTAAPAMVATLGTVTKDGKTDAPPEGAALNGP 1026
Cdd:PHA03247  2767 PAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAP 2814
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 938-1027 1.69e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 42.10  E-value: 1.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  938 SPACPAPKEVTAAPAVAVPPEATVAITTALSKAGPAIPTPAVSSALAVAVPLGPIMAVTAAPAMVATLGTVTKDGKTDAP 1017
Cdd:PRK14950   370 KPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAP 449

                           90
                   ....*....|..
gi 2462586067 1018 P--EGAALNGPV 1027
Cdd:PRK14950   450 PkeEEKALIADG 461
PHA03247 PHA03247
large tegument protein UL36; Provisional
 788-1018 5.35e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 5.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  788 PANSTPTAPGVVKDVGSSVWAAGTSAPEEKGWAKFTDFQPFCCSeSGPRCSSPVDTECSHAEGSRSQGPEKAFSPASPCA 867
Cdd:PHA03247  2613 PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDP-APGRVSRPRRARRLGRAAQASSPPQRPRRRAARPT 2691

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  868 wnvcvtrKAPLLASDSSSSGGSHSEDGDQKAASAMD----AVSRGPGREAPPLPTVARTEEAVGRVGCADSRLLSPACPA 943
Cdd:PHA03247  2692 -------VGSLTSLADPPPPPPTPEPAPHALVSATPlppgPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTA 2764

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  944 PKEVTAAPAvaVP-----PEATVAITTALSKAGPAIPTPAVSSALAVAVPlGPIMAVTAAPAMVATLGTVTKDGKTDAPP 1018
Cdd:PHA03247  2765 GPPAPAPPA--APaagppRRLTRPAVASLSESRESLPSPWDPADPPAAVL-APAAALPPAASPAGPLPPPTSAQPTAPPP 2841
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
908-1027 8.06e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.24  E-value: 8.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  908 GPGREAPPLPTVARTEEAVGRVGCADSRLLSPACPAPKEVTAAPAVAVPPEATVAITTALSKAGPAIPTPAVSSALAVAV 987
Cdd:PRK12323   367 QSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 2462586067  988 PLGPIMAVTAAPAMVATLGTVTKDGKTDAPPEGAALNGPV 1027
Cdd:PRK12323   447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPA 486
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 897-1022 9.51e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 39.55  E-value: 9.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586067  897 KAASAMDAVSRGPGREAPPlptvARTEEAVGRVGCADSRLLSP---ACPAPKEVTAAPAVAVPPEATVAITTALSKAGPA 973
Cdd:PTZ00436   218 KAAAPAKAAAAPAKAAAPP----AKAAAAPAKAAAAPAKAAAPpakAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPA 293

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2462586067  974 IPTPAVSSALAVAVPLGPIMAVTAAP---AMVATLGTVTKDGKTDAPPEGAA 1022
Cdd:PTZ00436   294 KAAAAPAKAAAAPAKAAAAPAKAAAPpakAAAPPAKAATPPAKAAAPPAKAA 345
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH