|
Name |
Accession |
Description |
Interval |
E-value |
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
202-786 |
0e+00 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 748.80 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 202 EEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGA--VLINGLPRDLRCFRKVSCYIMQDDMLLPH 279
Cdd:TIGR00955 34 ERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSgsVLLNGMPIDAKEMRAISAYVQQDDLFIPT 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQEAMMVSAHLKLQEK--DEGRREMVKEILTALGLLSCANTRTG------SLSGGQRKRLAIALELVNNPPVMFFDEP 351
Cdd:TIGR00955 114 LTVREHLMFQAHLRMPRRvtKKEKRERVDEVLQALGLRKCANTRIGvpgrvkGLSGGERKRLAFASELLTDPPLLFCDEP 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 352 TSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVCNLVPYLRDLGLNCPTYHNPAD 431
Cdd:TIGR00955 194 TSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPAD 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 432 FVMEVASGEYGDQNSrlVRAVREGMCDSDHKRDLGGDAEVNPFLWHRPSeevkqtkrlKGLRKDSSSMEGCHsFSASCLT 511
Cdd:TIGR00955 274 FYVQVLAVIPGSENE--SRERIEKICDSFAVSDIGRDMLVNTNLWSGKA---------GGLVKDSENMEGIG-YNASWWT 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 512 QFCILFKRTFLSIMRDSVLTHLRITSHIGIGLLIGLLYLGIGNEAKKVLSNSGFLFFSMLFLMFAALMPTVLTFPLEMGV 591
Cdd:TIGR00955 342 QFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPV 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 592 FLREHLNYWYSLKAYYLAKTMADVPFQIMFPVAYCSIVYWMTSQPSDAVRFVLFAALGTMTSLVAQSLGLLIGAASTSLQ 671
Cdd:TIGR00955 422 FLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTS 501
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 672 VATFVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYISYVRYGFEGVILSIYGLDR--EDLHCDIDETCHFQKsEAILREL 749
Cdd:TIGR00955 502 MALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDniECTSANTTGPCPSSG-EVILETL 580
|
570 580 590
....*....|....*....|....*....|....*..
gi 2462583501 750 DVENAKLYLDFIVLGIFFISLRLIAYFVLRYKIRAER 786
Cdd:TIGR00955 581 SFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
203-407 |
1.15e-94 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 293.30 E-value: 1.15e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 203 EGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRET-GMKGAVLINGLPRDLRCFRKVSCYIMQDDMLLPHLT 281
Cdd:cd03213 19 KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGlGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 282 VQEAMMVSAHLKlqekdegrremvkeiltalgllscantrtgSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCF 361
Cdd:cd03213 99 VRETLMFAAKLR------------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSAL 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2462583501 362 QVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRG 407
Cdd:cd03213 149 QVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
206-779 |
1.31e-77 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 263.66 E-value: 1.31e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGMKGAVLINGLPRDLRCFRKVScYIMQDDMLLPHLTVQE 284
Cdd:PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGrIQGNNFTGTILANNRKPTKQILKRTG-FVTQDDILYPHLTVRE 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 285 AMMVSAHLKLQE---KDEGRReMVKEILTALGLLSCANTRTGS-----LSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:PLN03211 160 TLVFCSLLRLPKsltKQEKIL-VAESVISELGLTKCENTIIGNsfirgISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 357 SASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVCNLVPYLRDLGLNCPTYHNPADFVMEV 436
Cdd:PLN03211 239 ATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDL 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 437 ASG--EYGDQNSRLVRAVREGMCDSdHKRDLGGDAEVNPFLWHRPSEEvkqtKRLKGLRKDSSSMEGCHSFSASCLTQFC 514
Cdd:PLN03211 319 ANGvcQTDGVSEREKPNVKQSLVAS-YNTLLAPKVKAAIEMSHFPQAN----ARFVGSASTKEHRSSDRISISTWFNQFS 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 515 ILFKRTfLSIMRDSVLTHLRITShiGIGLLIGLLYLGIGNEAKKVLSNSGFLFFSMLFLMFAALMPTVLTFPLEMGVFLR 594
Cdd:PLN03211 394 ILLQRS-LKERKHESFNTLRVFQ--VIAAALLAGLMWWHSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVK 470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 595 EHLNYWYSLKAYYLAKTMADVPFQIMFPVAYCSIVYWMTSQPSDAVRFVLFAALGTMTSLVAQSLGLLIGAASTSLQVAT 674
Cdd:PLN03211 471 ERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKAS 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 675 FVGPVTAIPVLLFSGFFVsfDTIPTYLQWMSYISYVRYGFEGVILSIYGLDRED---LHCDIDE-----TCHFQKSEAIl 746
Cdd:PLN03211 551 TIVTVTMLAFVLTGGFYV--HKLPSCMAWIKYISTTFYSYRLLINVQYGEGKRIsslLGCSLPHgsdraSCKFVEEDVA- 627
|
570 580 590
....*....|....*....|....*....|...
gi 2462583501 747 reldvENAKLYLDFIVLGIFFISLRLIAYFVLR 779
Cdd:PLN03211 628 -----GQISPATSVSVLIFMFVGYRLLAYLALR 655
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
200-737 |
3.49e-67 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 242.71 E-value: 3.49e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 200 PMEEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGM--KGAVLINGLPRDlRCFRKVSCYIMQDDMLL 277
Cdd:TIGR00956 770 KIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVitGGDRLVNGRPLD-SSFQRSIGYVQQQDLHL 848
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 PHLTVQEAMMVSAHLKLQEK--DEGRREMVKEILTALGLLSCANTRTG----SLSGGQRKRLAIALELVNNPP-VMFFDE 350
Cdd:TIGR00956 849 PTSTVRESLRFSAYLRQPKSvsKSEKMEYVEEVIKLLEMESYADAVVGvpgeGLNVEQRKRLTIGVELVAKPKlLLFLDE 928
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 351 PTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQG-QCVY---RGKVCN-LVPYLRDLGL-NCP 424
Cdd:TIGR00956 929 PTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGgQTVYfgdLGENSHtIINYFEKHGApKCP 1008
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 425 TYHNPADFVMEVASGEYGdqnsrlvravregmcdSDHKRDLggdAEVnpflWhRPSEEVKQTK-RLKGLRKDSSSMEG-- 501
Cdd:TIGR00956 1009 EDANPAEWMLEVIGAAPG----------------AHANQDY---HEV----W-RNSSEYQAVKnELDRLEAELSKAEDdn 1064
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 502 ----CHSFSASCLTQFCILFKRTFLSIMR--DSVLTHLRITshigiglligllylgigneakkvLSNS---GFLFF---- 568
Cdd:TIGR00956 1065 dpdaLSKYAASLWYQFKLVLWRTFQQYWRtpDYLYSKFFLT-----------------------IFAAlfiGFTFFkvgt 1121
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 569 SMLFL---MFAALMPTVLTFPLEMG-----------VFLREHLNYWYSLKAYYLAKTMADVPFQIMF-PVAYCSIVYWM- 632
Cdd:TIGR00956 1122 SLQGLqnqMFAVFMATVLFNPLIQQylppfvaqrdlYEVRERPSRTFSWLAFIAAQITVEIPYNLVAgTIFFFIWYYPVg 1201
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 633 ---TSQPSDAV--RFVLFAALGTMTSLVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYI 707
Cdd:TIGR00956 1202 fywNASKTGQVheRGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRC 1281
|
570 580 590
....*....|....*....|....*....|
gi 2462583501 708 SYVRYGFEGVILSIYGldredlhcDIDETC 737
Cdd:TIGR00956 1282 SPFTYLVQALLSTGLA--------DVPVTC 1303
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
200-407 |
7.65e-65 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 215.60 E-value: 7.65e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 200 PMEEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGMK-GAVLINGLPRDLRCFRKVSCYIMQDDMLL 277
Cdd:cd03234 14 KNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGrVEGGGTTsGQILFNGQPRKPDQFQKCVAYVRQDDILL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 PHLTVQEAMMVSAHLKLQE-KDEGRREMVKEI--LTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSG 354
Cdd:cd03234 94 PGLTVRETLTYTAILRLPRkSSDAIRKKRVEDvlLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSG 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2462583501 355 LDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRG 407
Cdd:cd03234 174 LDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
200-407 |
7.05e-62 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 206.33 E-value: 7.05e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 200 PMEEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETG-MKGAVLINGLPRDlRCFRKVSCYIMQDDMLLP 278
Cdd:cd03232 14 PVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGvITGEILINGRPLD-KNFQRSTGYVEQQDVHSP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 279 HLTVQEAMMVSAHLKlqekdegrremvkeiltalgllscantrtgSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSA 358
Cdd:cd03232 93 NLTVREALRFSALLR------------------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQ 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2462583501 359 SCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQ-GQCVYRG 407
Cdd:cd03232 143 AAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRgGKTVYFG 192
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
208-728 |
2.72e-55 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 207.01 E-value: 2.72e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 208 LLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGyRETG--MKGAVLINGLPRDLRCFRKVSCYIMQDDMLLPHLTVQEA 285
Cdd:PLN03140 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGgyIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRES 973
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 286 MMVSAHLKLqEKDEGRRE---MVKEILTALGLLSCANTRTG-----SLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:PLN03140 974 LIYSAFLRL-PKEVSKEEkmmFVDEVMELVELDNLKDAIVGlpgvtGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1052
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 358 ASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQ-GQCVYRGKV----CNLVPYLRDL-GL-NCPTYHNPA 430
Cdd:PLN03140 1053 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRgGQVIYSGPLgrnsHKIIEYFEAIpGVpKIKEKYNPA 1132
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 431 DFVMEVASgeygdqnsrLVRAVREGMCDSDHKRdlggdaevNPFLWHRPSEEVKQtkrLKGLRKDSSSMEGCHSFSASCL 510
Cdd:PLN03140 1133 TWMLEVSS---------LAAEVKLGIDFAEHYK--------SSSLYQRNKALVKE---LSTPPPGASDLYFATQYSQSTW 1192
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 511 TQFCILFKRTFLSIMR--DSVLTHLRITSHIGIGLLIGLLYLGIGNEAKKVLSNS-GFLFFSMLFLMFAALMPTVLTFPL 587
Cdd:PLN03140 1193 GQFKSCLWKQWWTYWRspDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMViGAMYAAVLFVGINNCSTVQPMVAV 1272
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 588 EMGVFLREHLNYWYSLKAYYLAKTMADVPFQIMFPVAYCSIVYWMTSQPSDAVRFVLFAALGTMTSLVAQSLGLLIGAAS 667
Cdd:PLN03140 1273 ERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLT 1352
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462583501 668 TSLQVAT-FVGPVTAIpVLLFSGFFVSFDTIPTYLQWMSYISYVRYGFEGVILSIYGlDRED 728
Cdd:PLN03140 1353 PNQQVAAiFAAAFYGL-FNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYG-DVED 1412
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
205-718 |
5.90e-53 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 199.56 E-value: 5.90e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 205 YKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRE---TGMKGAVLINGLPRD--LRCFRKVSCYIMQDDMLLPH 279
Cdd:TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDgfhIGVEGVITYDGITPEeiKKHYRGDVVYNAETDVHFPH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQEAMMVSAHLK-------LQEKDEGRREMVKEILTALGLLSCANTRTGS-----LSGGQRKRLAIALELVNNPPVMF 347
Cdd:TIGR00956 153 LTVGETLDFAARCKtpqnrpdGVSREEYAKHIADVYMATYGLSHTRNTKVGNdfvrgVSGGERKRVSIAEASLGGAKIQC 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 348 FDEPTSGLDSASCFQVVSLMKGLAQ-GGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVCNLVPYLRDLGLNCPTY 426
Cdd:TIGR00956 233 WDNATRGLDSATALEFIRALKTSANiLDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDR 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 427 HNPADFVMEVAS-------GEYGDQNSRLVRAVREGMCDSDHKRDLggDAEVNPFLWHRPSEEVKQTKRLKGLRKDSSSM 499
Cdd:TIGR00956 313 QTTADFLTSLTSpaerqikPGYEKKVPRTPQEFETYWRNSPEYAQL--MKEIDEYLDRCSESDTKEAYRESHVAKQSKRT 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 500 EGCHSFSASCLTQFCILFKRTFLSIMRDSVLTHLRITSHIGIGLLIGLLYLGIGNEAKKVLSNSGFLFFSMLFLMFAALM 579
Cdd:TIGR00956 391 RPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLL 470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 580 PTVLTFplEMGVFLREHLNY-WYSLKAYYLAKTMADVPFQIMFPVAYCSIVYWMTSQPSDAVRFVLFAALGTMTSLVAQS 658
Cdd:TIGR00956 471 EIASMY--EARPIVEKHRKYaLYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSH 548
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 659 LGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYISYVRYGFEGVI 718
Cdd:TIGR00956 549 LFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLM 608
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
204-412 |
1.04e-46 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 166.39 E-value: 1.04e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGmkGAVLINGLP--RDLRCFRKVSCYIMQDDMLLPHL 280
Cdd:COG1131 11 GDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGlLRPTS--GEVRVLGEDvaRDPAEVRRRIGYVPQEPALYPDL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 281 TVQEAMMVSAHLKLQEKDEgRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASC 360
Cdd:COG1131 89 TVRENLRFFARLYGLPRKE-ARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTSGLDPEAR 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2462583501 361 FQVVSLMKGLAQGGRSIICTIHQPSAkLFELFDQLYVLSQGQCVYRGKVCNL 412
Cdd:COG1131 168 RELWELLRELAAEGKTVLLSTHYLEE-AERLCDRVAIIDKGRIVADGTPDEL 218
|
|
| ABC2_membrane |
pfam01061 |
ABC-2 type transporter; |
516-718 |
1.93e-46 |
|
ABC-2 type transporter;
Pssm-ID: 426023 [Multi-domain] Cd Length: 204 Bit Score: 164.37 E-value: 1.93e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 516 LFKRTFLSIMRDSVLTHLRITSHIGIGLLIGLLYLGIGNEAKkVLSNSGFLFFSMLFLMFAALMPTVLTFPLEMGVFLRE 595
Cdd:pfam01061 1 LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQG-GLNRPGLLFFSILFNAFSALSGISPVFEKERGVLYRE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 596 HLNYWYSLKAYYLAKTMADVPFQIMFPVAYCSIVYWMTSQPSDAVRFVLFAALGTMTSLVAQSLGLLIGAASTSLQVATF 675
Cdd:pfam01061 80 LASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGLPPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQ 159
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2462583501 676 VGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYISYVRYGFEGVI 718
Cdd:pfam01061 160 LGPLVLLPLLLLSGFFIPIDSMPVWWQWIYYLNPLTYAIEALR 202
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
202-402 |
1.12e-44 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 159.55 E-value: 1.12e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 202 EEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLP---RDLRCFRKVSCYIMQ--DDML 276
Cdd:cd03225 10 PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP-TSGEVLVDGKDltkLSLKELRRKVGLVFQnpDDQF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 277 LpHLTVQEAMMVSA-HLKLQEKDEGRRemVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGL 355
Cdd:cd03225 89 F-GPTVEEEVAFGLeNLGLPEEEIEER--VEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGL 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2462583501 356 DSASCFQVVSLMKGLAQGGRSIICTIHQPSaKLFELFDQLYVLSQGQ 402
Cdd:cd03225 166 DPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
209-404 |
5.92e-44 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 158.28 E-value: 5.92e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGyRETGMKGAVLINGLP------RDLRCFRKVSC-YIMQDDMLLPHLT 281
Cdd:COG1136 24 LRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGG-LDRPTSGEVLIDGQDisslseRELARLRRRHIgFVFQFFNLLPELT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 282 VQEAMMVSAHLKLQEKDEgRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCF 361
Cdd:COG1136 103 ALENVALPLLLAGVSRKE-RRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNRPKLILADEPTGNLDSKTGE 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2462583501 362 QVVSLMKGLA-QGGRSIICTIHqpSAKLFELFDQLYVLSQGQCV 404
Cdd:COG1136 182 EVLELLRELNrELGTTIVMVTH--DPELAARADRVIRLRDGRIV 223
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
209-402 |
2.59e-43 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 156.11 E-value: 2.59e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGyRETGMKGAVLINGLP------RDLRCFR--KVScYIMQDDMLLPHL 280
Cdd:cd03255 20 LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG-LDRPTSGEVRVDGTDisklseKELAAFRrrHIG-FVFQSFNLLPDL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 281 TVQEAMMVSAHLKlQEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASC 360
Cdd:cd03255 98 TALENVELPLLLA-GVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2462583501 361 FQVVSLMKGLA-QGGRSIICTIHQPSakLFELFDQLYVLSQGQ 402
Cdd:cd03255 177 KEVMELLRELNkEAGTTIVVVTHDPE--LAEYADRIIELRDGK 217
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
206-408 |
7.22e-41 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 149.79 E-value: 7.22e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLINGLP---RDLRCFRKVSCYIMQ--DDMLLpH 279
Cdd:COG1122 14 TPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGlLKPT--SGEVLVDGKDitkKNLRELRRKVGLVFQnpDDQLF-A 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQEAMMVS-AHLKLqEKDEgRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSA 358
Cdd:COG1122 91 PTVEEDVAFGpENLGL-PREE-IRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVLVLDEPTAGLDPR 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2462583501 359 SCFQVVSLMKGLAQGGRSIICTIHQPSAkLFELFDQLYVLSQGQCVYRGK 408
Cdd:COG1122 169 GRRELLELLKRLNKEGKTVIIVTHDLDL-VAELADRVIVLDDGRIVADGT 217
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
206-407 |
1.32e-39 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 146.54 E-value: 1.32e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGLP--RDLRCFRKVSCYIMQDDMLLPHLTVQ 283
Cdd:COG4555 14 VPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGL-LKPDSGSILIDGEDvrKEPREARRQIGVLPDERGLYDRLTVR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 284 EammvsaHLKL-----QEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSA 358
Cdd:COG4555 93 E------NIRYfaelyGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPTNGLDVM 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2462583501 359 SCFQVVSLMKGLAQGGRSIICTIHQPSaKLFELFDQLYVLSQGQCVYRG 407
Cdd:COG4555 167 ARRLLREILRALKKEGKTVLFSSHIMQ-EVEALCDRVVILHKGKVVAQG 214
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
209-353 |
2.92e-39 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 142.40 E-value: 2.92e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGyRETGMKGAVLINGLP---RDLRCFRKVSCYIMQDDMLLPHLTVQEA 285
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAG-LLSPTEGTILLDGQDltdDERKSLRKEIGYVFQDPQLFPRLTVREN 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462583501 286 MMVSAHLKLQEKDEGRREMvKEILTALGLLSCANTR----TGSLSGGQRKRLAIALELVNNPPVMFFDEPTS 353
Cdd:pfam00005 80 LRLGLLLKGLSKREKDARA-EEALEKLGLGDLADRPvgerPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
202-382 |
4.90e-38 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 141.10 E-value: 4.90e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 202 EEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGyrETGM-KGAVLING--LPRDLRCFRKVSCYIMQDDMLLP 278
Cdd:cd03263 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG--ELRPtSGTAYINGysIRTDRKAARQSLGYCPQFDALFD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 279 HLTVQEAMMVSAHLKLQEKDEGRREmVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSA 358
Cdd:cd03263 89 ELTVREHLRFYARLKGLPKSEIKEE-VELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPA 167
|
170 180
....*....|....*....|....
gi 2462583501 359 SCFQVVSLMKGLaQGGRSIICTIH 382
Cdd:cd03263 168 SRRAIWDLILEV-RKGRSIILTTH 190
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
204-408 |
1.08e-37 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 141.17 E-value: 1.08e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGL------PRDLRCFRKVSCYIMQDDMLL 277
Cdd:cd03256 12 NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL-VEPTSGSVLIDGTdinklkGKALRQLRRQIGMIFQQFNLI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 PHLTVQEAMMVSA------------HLKLQEKDEGRremvkEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPV 345
Cdd:cd03256 91 ERLSVLENVLSGRlgrrstwrslfgLFPKEEKQRAL-----AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKL 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462583501 346 MFFDEPTSGLDSASCFQVVSLMKGLAQG-GRSIICTIHQPS-AKLFelFDQLYVLSQGQCVYRGK 408
Cdd:cd03256 166 ILADEPVASLDPASSRQVMDLLKRINREeGITVIVSLHQVDlAREY--ADRIVGLKDGRIVFDGP 228
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
204-407 |
5.95e-37 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 138.79 E-value: 5.95e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLINGLPR------DLRCFRKVSCYIMQDDML 276
Cdd:cd03261 11 GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGlLRPD--SGEVLIDGEDIsglseaELYRLRRRMGMLFQSGAL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 277 LPHLTVQE--AMMVSAHLKLQEKDegRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSG 354
Cdd:cd03261 89 FDSLTVFEnvAFPLREHTRLSEEE--IREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAG 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2462583501 355 LDSASCFQVVSLMKGL--AQGGRSIICTiHQPSAkLFELFDQLYVLSQGQCVYRG 407
Cdd:cd03261 167 LDPIASGVIDDLIRSLkkELGLTSIMVT-HDLDT-AFAIADRIAVLYDGKIVAEG 219
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
204-405 |
1.46e-36 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 137.91 E-value: 1.46e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLPRDlRCFRKVScYIMQD---DMLLPhL 280
Cdd:COG1121 17 GGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPP-TSGTVRLFGKPPR-RARRRIG-YVPQRaevDWDFP-I 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 281 TVQE--AMMVSAHLKLQEK-DEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:COG1121 93 TVRDvvLMGRYGRRGLFRRpSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDLLLLDEPFAGVDA 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2462583501 358 ASCFQVVSLMKGLAQGGRSIICTIHQPSAkLFELFDQLYVLSQGQCVY 405
Cdd:COG1121 173 ATEEALYELLRELRREGKTILVVTHDLGA-VREYFDRVLLLNRGLVAH 219
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
204-400 |
3.61e-36 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 135.30 E-value: 3.61e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGyRETGMKGAVLINGLPRDLRC--FRKVSCYIMQDDMLLPHLT 281
Cdd:COG4133 13 GERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAG-LLPPSAGEVLWNGEPIRDARedYRRRLAYLGHADGLKPELT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 282 VQEAMMVSAHLKlqeKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCF 361
Cdd:COG4133 92 VRENLRFWAALY---GLRADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTALDAAGVA 168
|
170 180 190
....*....|....*....|....*....|....*....
gi 2462583501 362 QVVSLMKGLAQGGRSIICTIHQPsakLFELFDQLYVLSQ 400
Cdd:COG4133 169 LLAELIAAHLARGGAVLLTTHQP---LELAAARVLDLGD 204
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
206-407 |
4.84e-36 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 135.08 E-value: 4.84e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRET--GMKGAVLINGLPRD--LRCFRKVSCYIMQDDMLLPHLT 281
Cdd:cd03233 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGnvSVEGDIHYNGIPYKefAEKYPGEIIYVSEEDVHFPTLT 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 282 VQEAMMVSAHLKlqekdegRREMVKEIltalgllscantrtgslSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCF 361
Cdd:cd03233 100 VRETLDFALRCK-------GNEFVRGI-----------------SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTAL 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2462583501 362 QVVSLMKGLAQG-GRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRG 407
Cdd:cd03233 156 EILKCIRTMADVlKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
206-402 |
1.27e-35 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 132.52 E-value: 1.27e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRE-TgmKGAVLINGLP--RDLRCFRKVSCYIMQDDMLLPHLTV 282
Cdd:cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKpD--SGEIKVLGKDikKEPEEVKRRIGYLPEEPSLYENLTV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 283 QEammvsaHLKLqekdegrremvkeiltalgllscantrtgslSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQ 362
Cdd:cd03230 91 RE------NLKL-------------------------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRRE 133
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2462583501 363 VVSLMKGLAQGGRSIICTIHQPSAkLFELFDQLYVLSQGQ 402
Cdd:cd03230 134 FWELLRELKKEGKTILLSSHILEE-AERLCDRVAILNNGR 172
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
216-407 |
2.77e-35 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 133.00 E-value: 2.77e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 216 FNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGL------PRDlrcfRKVScYIMQDDMLLPHLTVQE--AMM 287
Cdd:cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGF-ETPQSGRVLINGVdvtaapPAD----RPVS-MLFQENNLFAHLTVEQnvGLG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 288 VSAHLKLQEKDegrREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLM 367
Cdd:cd03298 95 LSPGLKLTAED---RQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLV 171
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2462583501 368 KGL-AQGGRSIICTIHQPSAKLfELFDQLYVLSQGQCVYRG 407
Cdd:cd03298 172 LDLhAETKMTVLMVTHQPEDAK-RLAQRVVFLDNGRIAAQG 211
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
206-407 |
2.97e-35 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 134.40 E-value: 2.97e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLINGLP------RDLRcfRKVScYIMQDDMLLPH 279
Cdd:COG1120 14 RPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPS-SGEVLLDGRDlaslsrRELA--RRIA-YVPQEPPAPFG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQEAMMV--SAHLK----LQEKDegrREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTS 353
Cdd:COG1120 90 LTVRELVALgrYPHLGlfgrPSAED---REAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLLLDEPTS 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462583501 354 GLDSASCFQVVSLMKGLAQG-GRSIICTIHQPS-AKLFelFDQLYVLSQGQCVYRG 407
Cdd:COG1120 167 HLDLAHQLEVLELLRRLARErGRTVVMVLHDLNlAARY--ADRLVLLKDGRIVAQG 220
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
207-717 |
4.64e-35 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 144.22 E-value: 4.64e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 207 TLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMK--GAVLINGLPRDLRCFRKVSCYIMQDDMLLPHLTVQE 284
Cdd:PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKvsGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 285 AMMVSA-------------HLKLQEKDEG--------------RREMVKE------ILTALGLLSCANTRTGS-----LS 326
Cdd:PLN03140 259 TLDFSArcqgvgtrydllsELARREKDAGifpeaevdlfmkatAMEGVKSslitdyTLKILGLDICKDTIVGDemirgIS 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 327 GGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQ-GGRSIICTIHQPSAKLFELFDQLYVLSQGQCVY 405
Cdd:PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHlTEATVLMSLLQPAPETFDLFDDIILLSEGQIVY 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 406 RGKVCNLVPYLRDLGLNCPTYHNPADFVMEVASG----EYGDQNSRLVRAVREGMCDSDHKR-----DLGGDAEVnpflw 476
Cdd:PLN03140 419 QGPRDHILEFFESCGFKCPERKGTADFLQEVTSKkdqeQYWADRNKPYRYISVSEFAERFKSfhvgmQLENELSV----- 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 477 hrPSEEVKQTKRLKGLRKdsssmegcHSFSASCLTQFCilFKRTFLSIMRDSVL----THLRITSHIGIGLLIGLLYLGI 552
Cdd:PLN03140 494 --PFDKSQSHKAALVFSK--------YSVPKMELLKAC--WDKEWLLMKRNAFVyvfkTVQIIIVAAIASTVFLRTEMHT 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 553 GNEAKKVLSnSGFLFFSMLFLMF---AALMPTVLTFPlemgVFLRE-----HLNYWYSLKAYYLAktmadVPFQIMFPVA 624
Cdd:PLN03140 562 RNEEDGALY-IGALLFSMIINMFngfAELALMIQRLP----VFYKQrdllfHPPWTFTLPTFLLG-----IPISIIESVV 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 625 YCSIVYWMTSQPSDAVRFVLFAALGTMTSLVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPTYLQWM 704
Cdd:PLN03140 632 WVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWA 711
|
570
....*....|...
gi 2462583501 705 SYISYVRYGFEGV 717
Cdd:PLN03140 712 YWVSPLSYGFNAL 724
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
196-412 |
1.19e-34 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 132.49 E-value: 1.19e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 196 FPGDpmeegyKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGyRETGMKGAVLINGL------PRDLRCFRKVSCY 269
Cdd:COG3638 12 YPGG------TPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNG-LVEPTSGEILVDGQdvtalrGRALRRLRRRIGM 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 270 IMQDDMLLPHLTVQEAMMV---------SAHLKLQEKDEgrREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELV 340
Cdd:COG3638 85 IFQQFNLVPRLSVLTNVLAgrlgrtstwRSLLGLFPPED--RERALEALERVGLADKAYQRADQLSGGQQQRVAIARALV 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462583501 341 NNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQ-GGRSIICTIHQPS-AKlfELFDQLYVLSQGQCVYRGKVCNL 412
Cdd:COG3638 163 QEPKLILADEPVASLDPKTARQVMDLLRRIAReDGITVVVNLHQVDlAR--RYADRIIGLRDGRVVFDGPPAEL 234
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
206-407 |
9.71e-34 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 128.85 E-value: 9.71e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGeLVAIMGPSGAGKSTLMNILAGYRETGmKGAVLING--LPRDLRCFRKVSCYIMQDDMLLPHLTVQ 283
Cdd:cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS-SGTIRIDGqdVLKQPQKLRRRIGYLPQEFGVYPNFTVR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 284 EAMMVSAHLK-LQEKDEGRRemVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQ 362
Cdd:cd03264 91 EFLDYIAWLKgIPSKEVKAR--VDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIR 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2462583501 363 VVSLMKGLAQgGRSIICTIHQPSaKLFELFDQLYVLSQGQCVYRG 407
Cdd:cd03264 169 FRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
209-407 |
2.06e-33 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 128.71 E-value: 2.06e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVL-----INGLPRDLRC-------FRKVScyimqddm 275
Cdd:cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGfLRPT--SGSVLfdgedITGLPPHEIArlgigrtFQIPR-------- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 276 LLPHLTVQEAMMVSAHLKLQE---------KDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVM 346
Cdd:cd03219 86 LFPELTVLENVMVAAQARTGSglllararrEEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLL 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462583501 347 FFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAkLFELFDQLYVLSQGQCVYRG 407
Cdd:cd03219 166 LLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV-VMSLADRVTVLDQGRVIAEG 225
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
204-402 |
2.98e-33 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 127.25 E-value: 2.98e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGlpRDLRCF----RKVScYIMQDDMLLPH 279
Cdd:cd03259 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL-ERPDSGEILIDG--RDVTGVpperRNIG-MVFQDYALFPH 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQEAmmVSAHLKLQEKDEG-RREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSA 358
Cdd:cd03259 87 LTVAEN--IAFGLKLRGVPKAeIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2462583501 359 SCFQVVSLMKGL-AQGGRSIICTIHQPS-AklFELFDQLYVLSQGQ 402
Cdd:cd03259 165 LREELREELKELqRELGITTIYVTHDQEeA--LALADRIAVMNEGR 208
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
204-356 |
8.21e-33 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 126.43 E-value: 8.21e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGmkGAVLINGLPRDlRCFRKVScYIMQDDMLLPHLTV 282
Cdd:cd03293 15 GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGlERPTS--GEVLVDGEPVT-GPGPDRG-YVFQQDALLPWLTV 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462583501 283 QEAMMVSAHLKLQEKDEgRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:cd03293 91 LDNVALGLELQGVPKAE-ARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALD 163
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
206-402 |
1.48e-32 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 123.51 E-value: 1.48e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLINGLP---RDLRCFRKVSCYIMQddmllphlt 281
Cdd:cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGlLKPT--SGEILIDGKDiakLPLEELRRRIGYVPQ--------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 282 vqeammvsahlklqekdegrremvkeiltalgllscantrtgsLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCF 361
Cdd:cd00267 81 -------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRE 117
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2462583501 362 QVVSLMKGLAQGGRSIICTIHQPSAkLFELFDQLYVLSQGQ 402
Cdd:cd00267 118 RLLELLRELAEEGRTVIIVTHDPEL-AELAADRVIVLKDGK 157
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
204-402 |
2.07e-32 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 124.93 E-value: 2.07e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGmkGAVLINGLPRD------LRcfRKVScYIMQDdml 276
Cdd:COG4619 11 GGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADlDPPTS--GEIYLDGKPLSampppeWR--RQVA-YVPQE--- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 277 lPHL---TVQEAMMVSAHLKLQEKDegrREMVKEILTALGL-LSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPT 352
Cdd:COG4619 83 -PALwggTVRDNLPFPFQLRERKFD---RERALELLERLGLpPDILDKPVERLSGGERQRLALIRALLLQPDVLLLDEPT 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2462583501 353 SGLDSASCFQVVSLMKGL-AQGGRSIICTIHQPsAKLFELFDQLYVLSQGQ 402
Cdd:COG4619 159 SALDPENTRRVEELLREYlAEEGRAVLWVSHDP-EQIERVADRVLTLEAGR 208
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
200-356 |
2.68e-32 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 125.97 E-value: 2.68e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 200 PMEEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGLPRDlRCFRKVScYIMQDDMLLPH 279
Cdd:COG1116 18 PTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGL-EKPTSGEVLVDGKPVT-GPGPDRG-VVFQEPALLPW 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462583501 280 LTVQEAMMVSAHLKLQEKDEgRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:COG1116 95 LTVLDNVALGLELRGVPKAE-RRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLLMDEPFGALD 170
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
206-407 |
3.33e-32 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 123.31 E-value: 3.33e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLINGlpRDLrcfrkvscyimqddmllphltvqea 285
Cdd:cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-SGEILLDG--KDL------------------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 286 mmvsAHLKLQEKdegRREM--VKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQV 363
Cdd:cd03214 64 ----ASLSPKEL---ARKIayVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIEL 136
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2462583501 364 VSLMKGLA-QGGRSIICTIHQPS-AKLFelFDQLYVLSQGQCVYRG 407
Cdd:cd03214 137 LELLRRLArERGKTVVMVLHDLNlAARY--ADRVILLKDGRIVAQG 180
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
206-408 |
3.97e-32 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 125.10 E-value: 3.97e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGLP------RDLRCFRKVSCYIMQDDMLLPH 279
Cdd:TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL-VEPSSGSILLEGTDitklrgKKLRKLRRRIGMIFQHYNLIER 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQEAMM---VSAHLKLQ-------EKDegrREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFD 349
Cdd:TIGR02315 94 LTVLENVLhgrLGYKPTWRsllgrfsEED---KERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILAD 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462583501 350 EPTSGLDSASCFQVVSLMKGLAQG-GRSIICTIHQPS-AKLFElfDQLYVLSQGQCVYRGK 408
Cdd:TIGR02315 171 EPIASLDPKTSKQVMDYLKRINKEdGITVIINLHQVDlAKKYA--DRIVGLKAGEIVFDGA 229
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
204-383 |
5.01e-32 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 123.79 E-value: 5.01e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTL---MNILagyrETGMKGAVLINGLP-----RDLRCFRKVSCYIMQDDM 275
Cdd:cd03262 11 GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLlrcINLL----EEPDSGTIIIDGLKltddkKNINELRQKVGMVFQQFN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 276 LLPHLTVQEAMMVsAHLKLQ--EKDEGRrEMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTS 353
Cdd:cd03262 87 LFPHLTVLENITL-APIKVKgmSKAEAE-ERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTS 164
|
170 180 190
....*....|....*....|....*....|
gi 2462583501 354 GLDSASCFQVVSLMKGLAQGGRSIICTIHQ 383
Cdd:cd03262 165 ALDPELVGEVLDVMKDLAEEGMTMVVVTHE 194
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
204-409 |
7.81e-32 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 130.41 E-value: 7.81e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGmkGAVLINGLP------RDLRCFRKVSCYIMQD--D 274
Cdd:COG1123 276 GGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGlLRPTS--GSILFDGKDltklsrRSLRELRRRVQMVFQDpyS 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 275 MLLPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILTALGL-LSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTS 353
Cdd:COG1123 354 SLNPRMTVGDIIAEPLRLHGLLSRAERRERVAELLERVGLpPDLADRYPHELSGGQRQRVAIARALALEPKLLILDEPTS 433
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462583501 354 GLDSASCFQVVSLMKGL-AQGGRSIictihqpsakLF---------ELFDQLYVLSQGQCVYRGKV 409
Cdd:COG1123 434 ALDVSVQAQILNLLRDLqRELGLTY----------LFishdlavvrYIADRVAVMYDGRIVEDGPT 489
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
206-418 |
1.24e-31 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 123.55 E-value: 1.24e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLING-----LPRD----LRcfRKVScYIMQDDM 275
Cdd:COG1127 18 RVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGlLRPD--SGEILVDGqditgLSEKelyeLR--RRIG-MLFQGGA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 276 LLPHLTVQE--AMMVSAHLKLQEKDegRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTS 353
Cdd:COG1127 93 LFDSLTVFEnvAFPLREHTDLSEAE--IRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDPEILLYDEPTA 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462583501 354 GLDSASCFQVVSLMKGL--AQGGRSIICTiHQ-PSAklFELFDQLYVLSQGQCVYRGKVCNLV----PYLRD 418
Cdd:COG1127 171 GLDPITSAVIDELIRELrdELGLTSVVVT-HDlDSA--FAIADRVAVLADGKIIAEGTPEELLasddPWVRQ 239
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
203-382 |
1.70e-31 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 121.98 E-value: 1.70e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 203 EGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLINGLPRDLRCFRKVSCYIMQD-DMLLPHL 280
Cdd:cd03226 10 KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGlIKES--SGSILLNGKPIKAKERRKSIGYVMQDvDYQLFTD 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 281 TVQEAMMVSahLKLQEKDEGRREmvkEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASC 360
Cdd:cd03226 88 SVREELLLG--LKELDAGNEQAE---TVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNM 162
|
170 180
....*....|....*....|..
gi 2462583501 361 FQVVSLMKGLAQGGRSIICTIH 382
Cdd:cd03226 163 ERVGELIRELAAQGKAVIVITH 184
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
204-402 |
2.12e-31 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 120.75 E-value: 2.12e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLING-----LPRDLRCFRKVSCYIMQDDMLLP 278
Cdd:cd03229 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL-EEPDSGSILIDGedltdLEDELPPLRRRIGMVFQDFALFP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 279 HLTVQEammvsahlklqekdegrremvkeiltalgllscaNTRTGsLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSA 358
Cdd:cd03229 90 HLTVLE----------------------------------NIALG-LSGGQQQRVALARALAMDPDVLLLDEPTSALDPI 134
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2462583501 359 SCFQVVSLMKGL-AQGGRSIICTIHQPsAKLFELFDQLYVLSQGQ 402
Cdd:cd03229 135 TRREVRALLKSLqAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
208-407 |
2.22e-31 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 131.11 E-value: 2.22e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 208 LLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLINGL------PRDLRcfRKVScYIMQDDMLL--- 277
Cdd:COG2274 490 VLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGlYEPT--SGRILIDGIdlrqidPASLR--RQIG-VVLQDVFLFsgt 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 ---------PHLTVQE----AMMVSAHLKLQEKDEGrremvkeILTALGllscanTRTGSLSGGQRKRLAIALELVNNPP 344
Cdd:COG2274 565 irenitlgdPDATDEEiieaARLAGLHDFIEALPMG-------YDTVVG------EGGSNLSGGQRQRLAIARALLRNPR 631
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462583501 345 VMFFDEPTSGLDSASCFQVVSLMKGLAQgGRSIICTIHQPSakLFELFDQLYVLSQGQCVYRG 407
Cdd:COG2274 632 ILILDEATSALDAETEAIILENLRRLLK-GRTVIIIAHRLS--TIRLADRIIVLDKGRIVEDG 691
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
204-407 |
2.55e-31 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 122.23 E-value: 2.55e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLING-----LPRDLR--CFRKVScYIMQDDM- 275
Cdd:cd03257 16 GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP-TSGSIIFDGkdllkLSRRLRkiRRKEIQ-MVFQDPMs 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 276 -LLPHLTVQEAMM--VSAHLKLQEKDEgRREMVKEILTALGLLS-CANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEP 351
Cdd:cd03257 94 sLNPRMTIGEQIAepLRIHGKLSKKEA-RKEAVLLLLVGVGLPEeVLNRYPHELSGGQRQRVAIARALALNPKLLIADEP 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462583501 352 TSGLDSASCFQVVSLMKGLAQG-GRSIICTIHQPSAkLFELFDQLYVLSQGQCVYRG 407
Cdd:cd03257 173 TSALDVSVQAQILDLLKKLQEElGLTLLFITHDLGV-VAKIADRVAVMYAGKIVEEG 228
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
209-382 |
4.92e-31 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 120.98 E-value: 4.92e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGyRETGMKGAVLINGLP------RDLRCFRKVSCYIMQDDMLLPHLTV 282
Cdd:cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYK-EELPTSGTIRVNGQDvsdlrgRAIPYLRRKIGVVFQDFRLLPDRNV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 283 QEAMMVSahlkLQEKDEGRREM---VKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSAS 359
Cdd:cd03292 96 YENVAFA----LEVTGVPPREIrkrVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDT 171
|
170 180
....*....|....*....|...
gi 2462583501 360 CFQVVSLMKGLAQGGRSIICTIH 382
Cdd:cd03292 172 TWEIMNLLKKINKAGTTVVVATH 194
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
196-382 |
5.69e-31 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 120.22 E-value: 5.69e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 196 FPGDPmeegykTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLINGLP-----RDLRCFRKVSCY 269
Cdd:TIGR01166 1 YPGGP------EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGlLRPQ--SGAVLIDGEPldysrKGLLERRQRVGL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 270 IMQ--DDMLLPHLTVQEAMMVSAHLKLQEKDEGRRemVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMF 347
Cdd:TIGR01166 73 VFQdpDDQLFAADVDQDVAFGPLNLGLSEAEVERR--VREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLL 150
|
170 180 190
....*....|....*....|....*....|....*
gi 2462583501 348 FDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIH 382
Cdd:TIGR01166 151 LDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTH 185
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
202-402 |
1.99e-30 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 117.87 E-value: 1.99e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 202 EEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLINGLPR---DLRCFRKVSCYIMQDDMLL 277
Cdd:cd03228 11 PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRlYDPT--SGEILIDGVDLrdlDLESLRKNIAYVPQDPFLF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 pHLTVQEAMmvsahlklqekdegrremvkeiltalgllscantrtgsLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:cd03228 89 -SGTIRENI--------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDP 129
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2462583501 358 ASCFQVVSLMKGLAQgGRSIICTIHQPSakLFELFDQLYVLSQGQ 402
Cdd:cd03228 130 ETEALILEALRALAK-GKTVIVIAHRLS--TIRDADRIIVLDDGR 171
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
206-401 |
3.28e-30 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 118.79 E-value: 3.28e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG----YRetgmkGAVLINGLPrdLRCFRKVSCYIMQD---DMLLP 278
Cdd:cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGllkpTS-----GSIRVFGKP--LEKERKRIGYVPQRrsiDRDFP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 279 hLTVQEAMM------VSAHLKLQEKDegrREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPT 352
Cdd:cd03235 85 -ISVRDVVLmglyghKGLFRRLSKAD---KAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2462583501 353 SGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAkLFELFDQLYVLSQG 401
Cdd:cd03235 161 AGVDPKTQEDIYELLRELRREGMTILVVTHDLGL-VLEYFDRVLLLNRT 208
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
209-408 |
4.90e-30 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 118.31 E-value: 4.90e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGLP-RDLRCFRKVS---CYIMQDDMLLPHLTVQE 284
Cdd:cd03224 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL-LPPRSGSIRFDGRDiTGLPPHERARagiGYVPEGRRIFPELTVEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 285 AMMVSAHLKLQEKDEGRREMVKEILTALGLLScaNTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVV 364
Cdd:cd03224 95 NLLLGAYARRRAKRKARLERVYELFPRLKERR--KQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2462583501 365 SLMKGLAQGGRSIIcTIHQPSAKLFELFDQLYVLSQGQCVYRGK 408
Cdd:cd03224 173 EAIRELRDEGVTIL-LVEQNARFALEIADRAYVLERGRVVLEGT 215
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
206-402 |
8.25e-30 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 117.85 E-value: 8.25e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLING-----LPRD----LRcfRKVScYIMQDDM 275
Cdd:COG2884 15 REALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGeERPT--SGQVLVNGqdlsrLKRReipyLR--RRIG-VVFQDFR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 276 LLPHLTVQE----AMMVsahLKLQEKDEGRRemVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEP 351
Cdd:COG2884 90 LLPDRTVYEnvalPLRV---TGKSRKEIRRR--VREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPELLLADEP 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2462583501 352 TSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPsaklfELFDQL----YVLSQGQ 402
Cdd:COG2884 165 TGNLDPETSWEIMELLEEINRRGTTVLIATHDL-----ELVDRMpkrvLELEDGR 214
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
205-409 |
1.14e-29 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 117.55 E-value: 1.14e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 205 YKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLING-----LPRDLrcfRKVScYIMQDDMLLPH 279
Cdd:COG3840 11 YGDFPLRFDLTIAAGERVAILGPSGAGKSTLLNLIAGF-LPPDSGRILWNGqdltaLPPAE---RPVS-MLFQENNLFPH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQE--AMMVSAHLKLQEKDegrREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:COG3840 86 LTVAQniGLGLRPGLKLTAEQ---RAQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALDP 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2462583501 358 ASCFQVVSLMKGLAQG-GRSIICTIHQPS-AKLfeLFDQLYVLSQGQCVYRGKV 409
Cdd:COG3840 163 ALRQEMLDLVDELCRErGLTVLMVTHDPEdAAR--IADRVLLVADGRIAADGPT 214
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
200-384 |
1.42e-29 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 125.22 E-value: 1.42e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 200 PMEEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNIL-------AG-YRETGMKGAVLINGLPRDLRcfRKVSCYIM 271
Cdd:PRK10535 15 PSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILgcldkptSGtYRVAGQDVATLDADALAQLR--REHFGFIF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 272 QDDMLLPHLTVQEAMMVSAHLKLQEKDEgRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEP 351
Cdd:PRK10535 93 QRYHLLSHLTAAQNVEVPAVYAGLERKQ-RLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEP 171
|
170 180 190
....*....|....*....|....*....|...
gi 2462583501 352 TSGLDSASCFQVVSLMKGLAQGGRSIICTIHQP 384
Cdd:PRK10535 172 TGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP 204
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
209-407 |
2.10e-29 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 116.53 E-value: 2.10e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGmkGAVLINGL------PRDLRcfRKVScYIMQDdmllPHL- 280
Cdd:cd03245 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGlYKPTS--GSVLLDGTdirqldPADLR--RNIG-YVPQD----VTLf 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 281 --TVQEAMMvsahLKLQEKDEgrrEMVKEILTALGLLSCANT-----------RTGSLSGGQRKRLAIALELVNNPPVMF 347
Cdd:cd03245 91 ygTLRDNIT----LGAPLADD---ERILRAAELAGVTDFVNKhpngldlqigeRGRGLSGGQRQAVALARALLNDPPILL 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 348 FDEPTSGLDSASCFQVVSLMKGLAqGGRSIICTIHQPSakLFELFDQLYVLSQGQCVYRG 407
Cdd:cd03245 164 LDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPS--LLDLVDRIIVMDSGRIVADG 220
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
206-419 |
2.68e-29 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 117.21 E-value: 2.68e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGLP---RDLRCFRKVSCYIMQDDM--LLPHL 280
Cdd:COG1124 18 VPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGL-ERPWSGEVTFDGRPvtrRRRKAFRRRVQMVFQDPYasLHPRH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 281 TVQEAmmVSAHLKLQEKDEgRREMVKEILTALGL-LSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSAS 359
Cdd:COG1124 97 TVDRI--LAEPLRIHGLPD-REERIAELLEQVGLpPSFLDRYPHQLSGGQRQRVAIARALILEPELLLLDEPTSALDVSV 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462583501 360 CFQVVSLMKGL-AQGGRSIICTIHQPSAKLFeLFDQLYVLSQGQCV---YRGKVCNLV--PYLRDL 419
Cdd:COG1124 174 QAEILNLLKDLrEERGLTYLFVSHDLAVVAH-LCDRVAVMQNGRIVeelTVADLLAGPkhPYTREL 238
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
209-402 |
2.74e-29 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 117.45 E-value: 2.74e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGmkGAVLINGlpRDL--------------RCFRKVScyimqd 273
Cdd:COG0411 20 VDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGfYRPTS--GRILFDG--RDItglpphriarlgiaRTFQNPR------ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 274 dmLLPHLTVQEAMMVSAHLKLQE-------------KDEGR-REMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALEL 339
Cdd:COG0411 90 --LFPELTVLENVLVAAHARLGRgllaallrlprarREEREaRERAEELLERVGLADRADEPAGNLSYGQQRRLEIARAL 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462583501 340 VNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQG-GRSIICTIHQPSAkLFELFDQLYVLSQGQ 402
Cdd:COG0411 168 ATEPKLLLLDEPAAGLNPEETEELAELIRRLRDErGITILLIEHDMDL-VMGLADRIVVLDFGR 230
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
204-453 |
3.17e-29 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 122.70 E-value: 3.17e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGY--RETGMKGAVLING-----LPRDLRCfRKVScYIMQDDM- 275
Cdd:COG1123 17 GDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLlpHGGRISGEVLLDGrdlleLSEALRG-RRIG-MVFQDPMt 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 276 -LLPhLTVQEAMMVSAHLKLQEKDEgRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSG 354
Cdd:COG1123 95 qLNP-VTVGDQIAEALENLGLSRAE-ARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDPDLLIADEPTTA 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 355 LDSASCFQVVSLMKGL-AQGGRSIICTIHQPsAKLFELFDQLYVLSQGQCVYRGKVCNL---------VPYLRDLGLNCP 424
Cdd:COG1123 173 LDVTTQAEILDLLRELqRERGTTVLLITHDL-GVVAEIADRVVVMDDGRIVEDGPPEEIlaapqalaaVPRLGAARGRAA 251
|
250 260 270
....*....|....*....|....*....|.
gi 2462583501 425 TYHNPADFVMEVA--SGEYGDQNSRLVRAVR 453
Cdd:COG1123 252 PAAAAAEPLLEVRnlSKRYPVRGKGGVRAVD 282
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
209-382 |
6.17e-29 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 115.86 E-value: 6.17e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTL---MNILagyrETGMKGAVLINGLP-----RDLRCFRKVSCYIMQDDMLLPHL 280
Cdd:COG1126 17 LKGISLDVEKGEVVVIIGPSGSGKSTLlrcINLL----EEPDSGTITVDGEDltdskKDINKLRRKVGMVFQQFNLFPHL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 281 TVQEAMMVS-AHLKLQEKDEGRrEMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSAS 359
Cdd:COG1126 93 TVLENVTLApIKVKKMSKAEAE-ERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPEL 171
|
170 180
....*....|....*....|...
gi 2462583501 360 CFQVVSLMKGLAQGGRSIICTIH 382
Cdd:COG1126 172 VGEVLDVMRDLAKEGMTMVVVTH 194
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
204-383 |
6.32e-29 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 115.96 E-value: 6.32e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLM---NILagyrETGMKGAVLINGL----PR-DLRCFRKVSCYIMQDDM 275
Cdd:PRK09493 12 GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLrciNKL----EEITSGDLIVDGLkvndPKvDERLIRQEAGMVFQQFY 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 276 LLPHLTVQEAMMVSA-HLKLQEKDEGRrEMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSG 354
Cdd:PRK09493 88 LFPHLTALENVMFGPlRVRGASKEEAE-KQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSA 166
|
170 180
....*....|....*....|....*....
gi 2462583501 355 LDSASCFQVVSLMKGLAQGGRSIICTIHQ 383
Cdd:PRK09493 167 LDPELRHEVLKVMQDLAEEGMTMVIVTHE 195
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
206-413 |
9.85e-29 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 121.79 E-value: 9.85e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYREtGMKGAVLINGLPR---DLRCFRKVSCYIMQDDMLlPHLTV 282
Cdd:COG4988 350 RPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLP-PYSGSILINGVDLsdlDPASWRRQIAWVPQNPYL-FAGTI 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 283 QEammvsaHLKLQEKDEGRREM--------VKEILTAL--GLlscaNTRTGS----LSGGQRKRLAIALELVNNPPVMFF 348
Cdd:COG4988 428 RE------NLRLGRPDASDEELeaaleaagLDEFVAALpdGL----DTPLGEggrgLSGGQAQRLALARALLRDAPLLLL 497
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462583501 349 DEPTSGLDSASCFQVVSLMKGLAQGGRSIICTiHQPSakLFELFDQLYVLSQGQCVYRGKVCNLV 413
Cdd:COG4988 498 DEPTAHLDAETEAEILQALRRLAKGRTVILIT-HRLA--LLAQADRILVLDDGRIVEQGTHEELL 559
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
204-407 |
1.27e-28 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 113.85 E-value: 1.27e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGMKGAVLINGLPRDLRCFRKVSCyIMQDDMLLPHLTV 282
Cdd:cd03268 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGlIKPDSGEITFDGKSYQKNIEALRRIGA-LIEAPGFYPNLTA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 283 QEAMMVSAHLKLqekdeGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQ 362
Cdd:cd03268 90 RENLRLLARLLG-----IRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKE 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2462583501 363 VVSLMKGLAQGGRSIICTIHQPSaKLFELFDQLYVLSQGQCVYRG 407
Cdd:cd03268 165 LRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
205-408 |
2.42e-28 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 113.42 E-value: 2.42e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 205 YKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGLPR-DLRCFRKVSCYIMQDDMLLPHLTVQ 283
Cdd:TIGR01277 10 YEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF-IEPASGSIKVNDQSHtGLAPYQRPVSMLFQENNLFAHLTVR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 284 EAMMVSAH--LKLQEKdegRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCF 361
Cdd:TIGR01277 89 QNIGLGLHpgLKLNAE---QQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLRE 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2462583501 362 QVVSLMKGLA-QGGRSIICTIHQPSaKLFELFDQLYVLSQGQCVYRGK 408
Cdd:TIGR01277 166 EMLALVKQLCsERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
209-407 |
8.84e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 113.63 E-value: 8.84e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLINGLP-----RDLRCFRKVSCYIMQ--DDMLLPHL 280
Cdd:PRK13639 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGiLKPT--SGEVLIKGEPikydkKSLLEVRKTVGIVFQnpDDQLFAPT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 281 TVQEAMMVSAHLKLQEKDEGRRemVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASC 360
Cdd:PRK13639 96 VEEDVAFGPLNLGLSKEEVEKR--VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2462583501 361 FQVVSLMKGLAQGGRSIICTIHQpsAKLFELF-DQLYVLSQGQCVYRG 407
Cdd:PRK13639 174 SQIMKLLYDLNKEGITIIISTHD--VDLVPVYaDKVYVMSDGKIIKEG 219
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
207-409 |
9.89e-28 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 112.29 E-value: 9.89e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 207 TLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGL------PRDLRCFRKVSCYIMQDDMLLPHL 280
Cdd:cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL-ERPTSGSVLVDGTdltllsGKELRKARRRIGMIFQHFNLLSSR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 281 TVQEAMMVSAHLKLQEKDEgRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASC 360
Cdd:cd03258 98 TVFENVALPLEIAGVPKAE-IEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2462583501 361 FQVVSLMKGLAQG-GRSIICTIHQPSAkLFELFDQLYVLSQGQCVYRGKV 409
Cdd:cd03258 177 QSILALLRDINRElGLTIVLITHEMEV-VKRICDRVAVMEKGEVVEEGTV 225
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
204-407 |
2.07e-27 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 111.10 E-value: 2.07e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLING-----LPRDLRCfRKVSCYIMQDDMLL 277
Cdd:cd03218 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGlVKPD--SGKILLDGqditkLPMHKRA-RLGIGYLPQEASIF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 PHLTVQEAMMvsAHLKLQEKD-EGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:cd03218 88 RKLTVEENIL--AVLEIRGLSkKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVD 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2462583501 357 SASCFQVVSLMKGLAQGGRSIICTIHQPSAKLfELFDQLYVLSQGQCVYRG 407
Cdd:cd03218 166 PIAVQDIQKIIKILKDRGIGVLITDHNVRETL-SITDRAYIIYEGKVLAEG 215
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
204-409 |
4.64e-27 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 110.56 E-value: 4.64e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-----YRET----GMK-GAVLInglpRDLRcfRK---VSCYI 270
Cdd:COG1119 14 GGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGdlpptYGNDvrlfGERrGGEDV----WELR--KRiglVSPAL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 271 MQDdmLLPHLTVQEaMMVSA-------HLKLQEKDEGRremVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNP 343
Cdd:COG1119 88 QLR--FPRDETVLD-VVLSGffdsiglYREPTDEQRER---ARELLELLGLAHLADRPFGTLSQGEQRRVLIARALVKDP 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462583501 344 PVMFFDEPTSGLDSASCFQVVSLMKGLAQ-GGRSIICTIHQPSAkLFELFDQLYVLSQGQCVYRGKV 409
Cdd:COG1119 162 ELLILDEPTAGLDLGARELLLALLDKLAAeGAPTLVLVTHHVEE-IPPGITHVLLLKDGRVVAAGPK 227
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
209-412 |
5.66e-27 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 109.38 E-value: 5.66e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGY-RETGmkGAVLINGLP--RDLRCFRKVSCYIMQDDMLLPHLTVQEA 285
Cdd:cd03265 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLlKPTS--GRATVAGHDvvREPREVRRRIGIVFQDLSVDDELTGWEN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 286 MMVsaHLKLQE-KDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVV 364
Cdd:cd03265 94 LYI--HARLYGvPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2462583501 365 SLMKGL-AQGGRSIICTIH-QPSAKlfELFDQLYVLSQGQCVYRGKVCNL 412
Cdd:cd03265 172 EYIEKLkEEFGMTILLTTHyMEEAE--QLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
204-384 |
6.18e-27 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 108.81 E-value: 6.18e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLPRDLRCFRKVSCYIMQDDMLLPHLTVQ 283
Cdd:PRK13539 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP-AAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 284 EAMMVSAHLKlqekdEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQV 363
Cdd:PRK13539 92 ENLEFWAAFL-----GGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALF 166
|
170 180
....*....|....*....|..
gi 2462583501 364 VSLMKG-LAQGGRSIICTiHQP 384
Cdd:PRK13539 167 AELIRAhLAQGGIVIAAT-HIP 187
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
218-407 |
6.21e-27 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 109.31 E-value: 6.21e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 218 SGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGL------------PRDlrcfRKVScYIMQDDMLLPHLTVQEA 285
Cdd:cd03297 22 NEEVTGIFGASGAGKSTLLRCIAGL-EKPDGGTIVLNGTvlfdsrkkinlpPQQ----RKIG-LVFQQYALFPHLNVREN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 286 MMVSAHLKLQEKDegrREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVS 365
Cdd:cd03297 96 LAFGLKRKRNRED---RISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLP 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2462583501 366 LMKGLAQ--GGRSIICTiHQPSaKLFELFDQLYVLSQGQCVYRG 407
Cdd:cd03297 173 ELKQIKKnlNIPVIFVT-HDLS-EAEYLADRIVVMEDGRLQYIG 214
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
209-356 |
6.30e-27 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 112.88 E-value: 6.30e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLING-----LP---RDLrcfrkvsCYIMQDDMLLPHL 280
Cdd:COG3842 21 LDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGF-ETPDSGRILLDGrdvtgLPpekRNV-------GMVFQDYALFPHL 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462583501 281 TVQEAmmVSAHLKLQ--EKDEgRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:COG3842 93 TVAEN--VAFGLRMRgvPKAE-IRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRVLLLDEPLSALD 167
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
204-356 |
6.63e-27 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 109.63 E-value: 6.63e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGLP-RDLRCFRKVSCYIMQDDMLLPHLTV 282
Cdd:cd03300 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF-ETPTSGEILLDGKDiTNLPPHKRPVNTVFQNYALFPHLTV 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462583501 283 QEAMMVSAHLKLQEKDEGRREmVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:cd03300 90 FENIAFGLRLKKLPKAEIKER-VAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
209-356 |
9.60e-27 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 112.47 E-value: 9.60e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLING------LPRDlrcfRKVScyiM--QDDMLLPHL 280
Cdd:COG3839 19 LKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGL-EDPTSGEILIGGrdvtdlPPKD----RNIA---MvfQSYALYPHM 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462583501 281 TVQEAMmvSAHLKLQ--EKDEgRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:COG3839 91 TVYENI--AFPLKLRkvPKAE-IDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPKVFLLDEPLSNLD 165
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
204-407 |
2.06e-26 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 109.05 E-value: 2.06e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYReTGMKGAVLINGL------PRDLRCFRKVscyimqddmlL 277
Cdd:COG4559 12 GGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGEL-TPSSGEVRLNGRplaawsPWELARRRAV----------L 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 P-------HLTVQE--AMMVSAHLKLQEKDegrREMVKEILTALGLLSCANTRTGSLSGG--QRKRLAIAL----ELVNN 342
Cdd:COG4559 81 PqhsslafPFTVEEvvALGRAPHGSSAAQD---RQIVREALALVGLAHLAGRSYQTLSGGeqQRVQLARVLaqlwEPVDG 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462583501 343 PP-VMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPS-AKLFElfDQLYVLSQGQCVYRG 407
Cdd:COG4559 158 GPrWLFLDEPTSALDLAHQHAVLRLARQLARRGGGVVAVLHDLNlAAQYA--DRILLLHQGRLVAQG 222
|
|
| type_I_sec_LssB |
TIGR03375 |
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some ... |
209-404 |
2.29e-26 |
|
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274550 [Multi-domain] Cd Length: 694 Bit Score: 115.35 E-value: 2.29e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLINGL------PRDLRcfRKVScYIMQDDMLLpHLT 281
Cdd:TIGR03375 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGlYQPT--EGSVLLDGVdirqidPADLR--RNIG-YVPQDPRLF-YGT 554
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 282 VQEAMMVSAhlklQEKDEgrrEMVKEILTALGLLSCANT-----------RTGSLSGGQRKRLAIALELVNNPPVMFFDE 350
Cdd:TIGR03375 555 LRDNIALGA----PYADD---EEILRAAELAGVTEFVRRhpdgldmqigeRGRSLSGGQRQAVALARALLRDPPILLLDE 627
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2462583501 351 PTSGLDSASCFQVVSLMKGLAqGGRSIICTIHQPSakLFELFDQLYVLSQGQCV 404
Cdd:TIGR03375 628 PTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDNGRIV 678
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
207-357 |
3.26e-26 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 110.62 E-value: 3.26e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 207 TLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLING-------LPRDlrcfRKVScYIMQDDMLLPH 279
Cdd:COG1118 16 TLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGL-ETPDSGRIVLNGrdlftnlPPRE----RRVG-FVFQHYALFPH 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462583501 280 LTVQEAmmVSAHLKLQEKDEG-RREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:COG1118 90 MTVAEN--IAFGLRVRPPSKAeIRARVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEPEVLLLDEPFGALDA 166
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
207-372 |
3.26e-26 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 107.52 E-value: 3.26e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 207 TLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLING-----LPRDLRC-FR--KVScYIMQDDMLLP 278
Cdd:COG4181 26 TILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGL-DRPTSGTVRLAGqdlfaLDEDARArLRarHVG-FVFQSFQLLP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 279 HLTVQEAMMVSAHLKlQEKDegRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSA 358
Cdd:COG4181 104 TLTALENVMLPLELA-GRRD--ARARARALLERVGLGHRLDHYPAQLSGGEQQRVALARAFATEPAILFADEPTGNLDAA 180
|
170
....*....|....
gi 2462583501 359 SCFQVVSLMKGLAQ 372
Cdd:COG4181 181 TGEQIIDLLFELNR 194
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
195-419 |
3.51e-26 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 114.09 E-value: 3.51e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 195 GFPGDPmeegyKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLP-RDLR--CFRKVSCYIM 271
Cdd:COG4987 342 RYPGAG-----RPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDP-QSGSITLGGVDlRDLDedDLRRRIAVVP 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 272 QDdmllPHL---TVQEammvsaHLKLQEKDEGRREMVkEILTALGLLSCA-------NTRTGS----LSGGQRKRLAIAL 337
Cdd:COG4987 416 QR----PHLfdtTLRE------NLRLARPDATDEELW-AALERVGLGDWLaalpdglDTWLGEggrrLSGGERRRLALAR 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 338 ELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQgGRSIICTIHQPSAklFELFDQLYVLSQGQCVYRGKVCNLV---P 414
Cdd:COG4987 485 ALLRDAPILLLDEPTEGLDAATEQALLADLLEALA-GRTVLLITHRLAG--LERMDRILVLEDGRIVEQGTHEELLaqnG 561
|
....*
gi 2462583501 415 YLRDL 419
Cdd:COG4987 562 RYRQL 566
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
206-358 |
1.07e-25 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 105.64 E-value: 1.07e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETG--MKGAVLINGlpRDLRCF----RKVScYIMQDDMLLPH 279
Cdd:COG4136 14 RPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAfsASGEVLLNG--RRLTALpaeqRRIG-ILFQDDLLFPH 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQE--AMMVSAHLKLQEkdegRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:COG4136 91 LSVGEnlAFALPPTIGRAQ----RRARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLLDEPFSKLDA 166
|
.
gi 2462583501 358 A 358
Cdd:COG4136 167 A 167
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
206-407 |
1.21e-25 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 106.76 E-value: 1.21e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTL---MNIL----AGYRETG---MKGAVLINGLPRDLRCFRKVSCYIMQDDM 275
Cdd:PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLlrcINLLeqpeAGTIRVGditIDTARSLSQQKGLIRQLRQHVGFVFQNFN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 276 LLPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGL 355
Cdd:PRK11264 96 LFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSAL 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2462583501 356 DSASCFQVVSLMKGLAQGGRSIICTIHQPS-AKlfELFDQLYVLSQGQCVYRG 407
Cdd:PRK11264 176 DPELVGEVLNTIRQLAQEKRTMVIVTHEMSfAR--DVADRAIFMDQGRIVEQG 226
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
219-358 |
1.87e-25 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 105.43 E-value: 1.87e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 219 GELVAIMGPSGAGKSTLMNILAGYReTGMKGAVLINGlpRDLRCF----RKVScYIMQDDMLLPHLTVQEAMMVSAH--L 292
Cdd:PRK10771 25 GERVAILGPSGAGKSTLLNLIAGFL-TPASGSLTLNG--QDHTTTppsrRPVS-MLFQENNLFSHLTVAQNIGLGLNpgL 100
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462583501 293 KLqekDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSA 358
Cdd:PRK10771 101 KL---NAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
202-384 |
1.48e-24 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 102.05 E-value: 1.48e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 202 EEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLP----RDLRcfRKVSCYIMQDDMLL 277
Cdd:TIGR01189 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP-DSGEVRWNGTPlaeqRDEP--HENILYLGHLPGLK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 PHLTVQEAMMVSAHLKlqekdEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:TIGR01189 86 PELSALENLHFWAAIH-----GGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDK 160
|
170 180
....*....|....*....|....*..
gi 2462583501 358 ASCFQVVSLMKGLAQGGRSIICTIHQP 384
Cdd:TIGR01189 161 AGVALLAGLLRAHLARGGIVLLTTHQD 187
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
209-368 |
2.77e-24 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 102.03 E-value: 2.77e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLING-----LPRDLRCFrkvsCYIMQDDMLLPHLTVQ 283
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD-SGKILLNGkditnLPPEKRDI----SYVPQNYALFPHMTVY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 284 EAMMVSAHLKLQEKDEGRREmVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQV 363
Cdd:cd03299 90 KNIAYGLKKRKVDKKEIERK-VLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKL 168
|
....*
gi 2462583501 364 VSLMK 368
Cdd:cd03299 169 REELK 173
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
202-384 |
9.01e-24 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 99.87 E-value: 9.01e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 202 EEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLPRD-LRCFRKVSC-YIMQDDMLLPH 279
Cdd:cd03231 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP-LAGRVLLNGGPLDfQRDSIARGLlYLGHAPGIKTT 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQEAMMVSAhlklqekDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSAS 359
Cdd:cd03231 88 LSVLENLRFWH-------ADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAG 160
|
170 180
....*....|....*....|....*
gi 2462583501 360 CFQVVSLMKGLAQGGRSIICTIHQP 384
Cdd:cd03231 161 VARFAEAMAGHCARGGMVVLTTHQD 185
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
202-402 |
1.57e-23 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 98.06 E-value: 1.57e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 202 EEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLINGLP---RDLRCFRKVSCYIMQDDMLLP 278
Cdd:cd03246 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT-SGRVRLDGADisqWDPNELGDHVGYLPQDDELFS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 279 HlTVQEAMmvsahlklqekdegrremvkeiltalgllscantrtgsLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSA 358
Cdd:cd03246 90 G-SIAENI--------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVE 130
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2462583501 359 SCFQVVSLMKGLAQGGRSIICTIHQPSakLFELFDQLYVLSQGQ 402
Cdd:cd03246 131 GERALNQAIAALKAAGATRIVIAHRPE--TLASADRILVLEDGR 172
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
209-374 |
1.87e-23 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 100.09 E-value: 1.87e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTL---MNILagyrETGMKGAVLINGL---------PRDLRCFRKVSCYIMQDDML 276
Cdd:COG4161 18 LFDINLECPSGETLVLLGPSGAGKSSLlrvLNLL----ETPDSGQLNIAGHqfdfsqkpsEKAIRLLRQKVGMVFQQYNL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 277 LPHLTVQEAMmVSAHLKL--QEKDEGRrEMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSG 354
Cdd:COG4161 94 WPHLTVMENL-IEAPCKVlgLSKEQAR-EKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAA 171
|
170 180
....*....|....*....|
gi 2462583501 355 LDSASCFQVVSLMKGLAQGG 374
Cdd:COG4161 172 LDPEITAQVVEIIRELSQTG 191
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
203-398 |
1.89e-23 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 105.06 E-value: 1.89e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 203 EGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLINGLPR---DLRCFRKVSCYIMQddmlLPH 279
Cdd:TIGR02857 332 PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT-EGSIAVNGVPLadaDADSWRDQIAWVPQ----HPF 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTvqeAMMVSAHLKLQEKDeGRREMVKEILTALGLLSCA-------NTRTGS----LSGGQRKRLAIALELVNNPPVMFF 348
Cdd:TIGR02857 407 LF---AGTIAENIRLARPD-ASDAEIREALERAGLDEFVaalpqglDTPIGEggagLSGGQAQRLALARAFLRDAPLLLL 482
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2462583501 349 DEPTSGLDSASCFQVVSLMKGLAQgGRSIICTIHQPsaKLFELFDQLYVL 398
Cdd:TIGR02857 483 DEPTAHLDAETEAEVLEALRALAQ-GRTVLLVTHRL--ALAALADRIVVL 529
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
209-412 |
2.24e-23 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 101.31 E-value: 2.24e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGY-RETGmkGAVLINGL-----PRDLR-----CFRKVSCYimqDDmll 277
Cdd:TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLlRPTS--GTARVAGYdvvrePRKVRrsigiVPQYASVD---ED--- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 phLTVQEAMMVSAHLKLQEKDEgRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:TIGR01188 81 --LTGRENLEMMGRLYGLPKDE-AEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462583501 358 ASCFQVVSLMKGLAQGGRSIICTIHQpsakLFE---LFDQLYVLSQGQCVYRGKVCNL 412
Cdd:TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHY----MEEadkLCDRIAIIDHGRIIAEGTPEEL 211
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
204-372 |
2.35e-23 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 99.18 E-value: 2.35e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMK----GAVLING--------LPRDLRcfRKVScYIM 271
Cdd:cd03260 11 GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGapdeGEVLLDGkdiydldvDVLELR--RRVG-MVF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 272 QDDMLLPhLTVQEAmmVSAHLKLQE--KDEGRREMVKEILTALGLLSCANTRTG--SLSGGQRKRLAIALELVNNPPVMF 347
Cdd:cd03260 88 QKPNPFP-GSIYDN--VAYGLRLHGikLKEELDERVEEALRKAALWDEVKDRLHalGLSGGQQQRLCLARALANEPEVLL 164
|
170 180
....*....|....*....|....*
gi 2462583501 348 FDEPTSGLDSASCFQVVSLMKGLAQ 372
Cdd:cd03260 165 LDEPTSALDPISTAKIEELIAELKK 189
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
195-384 |
4.87e-23 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 97.30 E-value: 4.87e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 195 GFPGDPmeegyktLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYREtgmkgavlinglPRDLRCFRKVSC---YIM 271
Cdd:NF040873 1 GYGGRP-------VLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLR------------PTSGTVRRAGGArvaYVP 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 272 Q---DDMLLPhLTVQEAMMVS--AHLKLQEK-DEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPV 345
Cdd:NF040873 62 QrseVPDSLP-LTVRDLVAMGrwARRGLWRRlTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADL 140
|
170 180 190
....*....|....*....|....*....|....*....
gi 2462583501 346 MFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQP 384
Cdd:NF040873 141 LLLDEPTTGLDAESRERIIALLAEEHARGATVVVVTHDL 179
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
204-407 |
6.06e-23 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 97.74 E-value: 6.06e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLINGLPRDLRCFRKVScYIMQDDMLLPHLTV 282
Cdd:cd03269 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGiILPD--SGEVLFDGKPLDIAARNRIG-YLPEERGLYPKMKV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 283 QEAMMVSAHLKLQEKDEGRREmVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQ 362
Cdd:cd03269 88 IDQLVYLAQLKGLKKEEARRR-IDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVEL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2462583501 363 VVSLMKGLAQGGRSIICTIHQpSAKLFELFDQLYVLSQGQCVYRG 407
Cdd:cd03269 167 LKDVIRELARAGKTVILSTHQ-MELVEELCDRVLLLNKGRAVLYG 210
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
202-356 |
1.21e-22 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 97.58 E-value: 1.21e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 202 EEG--YKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGLP---------RDLRCfRKVScYI 270
Cdd:PRK11629 16 QEGsvQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL-DTPTSGDVIFNGQPmsklssaakAELRN-QKLG-FI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 271 MQDDMLLPHLTVQE--AM-MVSAHLKLQEKDEGRREMvkeiLTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMF 347
Cdd:PRK11629 93 YQFHHLLPDFTALEnvAMpLLIGKKKPAEINSRALEM----LAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVL 168
|
....*....
gi 2462583501 348 FDEPTSGLD 356
Cdd:PRK11629 169 ADEPTGNLD 177
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
206-407 |
1.54e-22 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 102.55 E-value: 1.54e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLINGLP------RDLRcfRKVScYIMQDDMLLpH 279
Cdd:COG1132 353 RPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPT-SGRILIDGVDirdltlESLR--RQIG-VVPQDTFLF-S 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQE-----------------AMMVSAHLKLQEKDEGRREMVKEiltalgllscantRTGSLSGGQRKRLAIALELVNN 342
Cdd:COG1132 428 GTIREnirygrpdatdeeveeaAKAAQAHEFIEALPDGYDTVVGE-------------RGVNLSGGQRQRIAIARALLKD 494
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462583501 343 PPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIIctI-HQPSAklFELFDQLYVLSQGQCVYRG 407
Cdd:COG1132 495 PPILILDEATSALDTETEALIQEALERLMKGRTTIV--IaHRLST--IRNADRILVLDDGRIVEQG 556
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
209-407 |
2.75e-22 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 96.53 E-value: 2.75e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLINGLP-RD--LRCFRKvSCYIMQDDMLLPHLTVQE- 284
Cdd:cd03251 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD-SGRILIDGHDvRDytLASLRR-QIGLVSQDVFLFNDTVAEn 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 285 ----------------AMMVSAHLKLQEKDEGRREMVKEiltalgllscantRTGSLSGGQRKRLAIALELVNNPPVMFF 348
Cdd:cd03251 96 iaygrpgatreeveeaARAANAHEFIMELPEGYDTVIGE-------------RGVKLSGGQRQRIAIARALLKDPPILIL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462583501 349 DEPTSGLDSASCFQVVSLMKGLAQgGRSIICTIHQPSAklFELFDQLYVLSQGQCVYRG 407
Cdd:cd03251 163 DEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST--IENADRIVVLEDGKIVERG 218
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
209-407 |
3.66e-22 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 95.51 E-value: 3.66e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLINGL-----PRDLRcfRKVScyIMQDDM-LLPHLTV 282
Cdd:cd03266 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD-AGFATVDGFdvvkePAEAR--RRLG--FVSDSTgLYDRLTA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 283 QEAMMVSAHLKLQEKDE--GRremVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASC 360
Cdd:cd03266 96 RENLEYFAGLYGLKGDEltAR---LEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMAT 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2462583501 361 FQVVSLMKGLAQGGRSIICTIHQPSaKLFELFDQLYVLSQGQCVYRG 407
Cdd:cd03266 173 RALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
217-374 |
3.76e-22 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 96.24 E-value: 3.76e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 217 NSGELVAIMGPSGAGKSTLMNILaGYRETGMKGAVLINGL---------PRDLRCFRKVSCYIMQDDMLLPHLTVQEAMm 287
Cdd:PRK11124 26 PQGETLVLLGPSGAGKSSLLRVL-NLLEMPRSGTLNIAGNhfdfsktpsDKAIRELRRNVGMVFQQYNLWPHLTVQQNL- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 288 VSAHLKLQEKDEGR-REMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSL 366
Cdd:PRK11124 104 IEAPCRVLGLSKDQaLARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI 183
|
....*...
gi 2462583501 367 MKGLAQGG 374
Cdd:PRK11124 184 IRELAETG 191
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
209-357 |
5.79e-22 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 96.08 E-value: 5.79e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGLP-----RDlrcfRKVscyIMQDDMLLPHLTVQ 283
Cdd:COG4525 23 LQDVSLTIESGEFVVALGASGCGKTTLLNLIAGF-LAPSSGEITLDGVPvtgpgAD----RGV---VFQKDALLPWLNVL 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462583501 284 EAmmVSAHLKLQ--EKDEgRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:COG4525 95 DN--VAFGLRLRgvPKAE-RRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFLLMDEPFGALDA 167
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
209-407 |
6.64e-22 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 95.43 E-value: 6.64e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGlpRD---LRCFRKVS---CYIMQDDMLLPHLTV 282
Cdd:COG0410 19 LHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGL-LPPRSGSIRFDG--EDitgLPPHRIARlgiGYVPEGRRIFPSLTV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 283 QEAMMVSAHL-KLQEKDEGRREMVKEILTALGLLscANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGL-----D 356
Cdd:COG0410 96 EENLLLGAYArRDRAEVRADLERVYELFPRLKER--RRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDEPSLGLaplivE 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2462583501 357 sascfQVVSLMKGLAQGGRSIICtIHQPSAKLFELFDQLYVLSQGQCVYRG 407
Cdd:COG0410 174 -----EIFEIIRRLNREGVTILL-VEQNARFALEIADRAYVLERGRIVLEG 218
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
209-357 |
6.66e-22 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 95.48 E-value: 6.66e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGL------PRDlrcfRKVScYIMQDDMLLPHLTV 282
Cdd:cd03296 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL-ERPDSGTILFGGEdatdvpVQE----RNVG-FVFQHYALFRHMTV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 283 QEAmmVSAHLKLQEKDEGR-----REMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:cd03296 92 FDN--VAFGLRVKPRSERPpeaeiRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 169
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
204-402 |
8.99e-22 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 94.24 E-value: 8.99e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLING-----LP---RDLrcfrkvsCYIMQDDM 275
Cdd:cd03301 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL-EEPTSGRIYIGGrdvtdLPpkdRDI-------AMVFQNYA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 276 LLPHLTVQEAMMVSAHLKLQEKDEGRREmVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGL 355
Cdd:cd03301 83 LYPHMTVYDNIAFGLKLRKVPKDEIDER-VREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNL 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2462583501 356 DSASCFQVVSLMKGLAQG-GRSIICTIH-QPSAklFELFDQLYVLSQGQ 402
Cdd:cd03301 162 DAKLRVQMRAELKRLQQRlGTTTIYVTHdQVEA--MTMADRIAVMNDGQ 208
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
209-378 |
9.91e-22 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 99.32 E-value: 9.91e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGmkGAVLINGLPRDLRCFRK-----VSCyIMQDDMLLPHLTV 282
Cdd:COG1129 20 LDGVSLELRPGEVHALLGENGAGKSTLMKILSGvYQPDS--GEILLDGEPVRFRSPRDaqaagIAI-IHQELNLVPNLSV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 283 QEAMMVSahlklQEKDEG----RREMVK---EILTALGL-LScANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSG 354
Cdd:COG1129 97 AENIFLG-----REPRRGglidWRAMRRrarELLARLGLdID-PDTPVGDLSVAQQQLVEIARALSRDARVLILDEPTAS 170
|
170 180
....*....|....*....|....
gi 2462583501 355 LDSASCFQVVSLMKGLAQGGRSII 378
Cdd:COG1129 171 LTEREVERLFRIIRRLKAQGVAII 194
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
204-404 |
1.23e-21 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 94.67 E-value: 1.23e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGL------PRDLRcfRKVScYIMQDDMLL 277
Cdd:cd03295 12 GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP-TSGEIFIDGEdireqdPVELR--RKIG-YVIQQIGLF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 PHLTVQEAmmVSAHLKLQE-KDEGRREMVKEILTALGL--LSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSG 354
Cdd:cd03295 88 PHMTVEEN--IALVPKLLKwPKEKIRERADELLALVGLdpAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGA 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2462583501 355 LDSASCFQVVSLMKGLAQG-GRSIICTIHQPSaKLFELFDQLYVLSQGQCV 404
Cdd:cd03295 166 LDPITRDQLQEEFKRLQQElGKTIVFVTHDID-EAFRLADRIAIMKNGEIV 215
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
204-407 |
1.63e-21 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 94.70 E-value: 1.63e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAgyR-ETGMKGAVLINGLPRDLRCFRKVSCYIMqddmLLP-HLT 281
Cdd:PRK11231 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA--RlLTPQSGTVFLGDKPISMLSSRQLARRLA----LLPqHHL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 282 VQEAMMV--------SAHL----KLQEKDegrREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFD 349
Cdd:PRK11231 87 TPEGITVrelvaygrSPWLslwgRLSAED---NARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLD 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462583501 350 EPTSGLDSASCFQVVSLMKGLAQGGRSIICTIH---QPSaklfELFDQLYVLSQGQCVYRG 407
Cdd:PRK11231 164 EPTTYLDINHQVELMRLMRELNTQGKTVVTVLHdlnQAS----RYCDHLVVLANGHVMAQG 220
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
204-356 |
1.83e-21 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 98.98 E-value: 1.83e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGyRETGMKGAVLInglPRDLRcfrkVScYIMQDDMLLPHLTV- 282
Cdd:COG0488 9 GGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAG-ELEPDSGEVSI---PKGLR----IG-YLPQEPPLDDDLTVl 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 283 QEAMMVSAHLK--LQEKDEGRREM----------------------------VKEILTALGLLSC-ANTRTGSLSGGQRK 331
Cdd:COG0488 80 DTVLDGDAELRalEAELEELEAKLaepdedlerlaelqeefealggweaearAEEILSGLGFPEEdLDRPVSELSGGWRR 159
|
170 180
....*....|....*....|....*
gi 2462583501 332 RLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:COG0488 160 RVALARALLSEPDLLLLDEPTNHLD 184
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
208-408 |
1.93e-21 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 94.09 E-value: 1.93e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 208 LLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYReTGMKGAVLINGLPR---DLRCFRKVSCYIMQDDMLLP------ 278
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY-VPENGRVLVDGHDLalaDPAWLRRQVGVVLQENVLFNrsirdn 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 279 ----------HLTVQEAMMVSAHLKLQEKDEGRREMVKEiltalgllscantRTGSLSGGQRKRLAIALELVNNPPVMFF 348
Cdd:cd03252 96 ialadpgmsmERVIEAAKLAGAHDFISELPEGYDTIVGE-------------QGAGLSGGQRQRIAIARALIHNPRILIF 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 349 DEPTSGLDSASCFQVVSLMKGLAQgGRSIICTIHQPSAklFELFDQLYVLSQGQCVYRGK 408
Cdd:cd03252 163 DEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST--VKNADRIIVMEKGRIVEQGS 219
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
204-383 |
2.05e-21 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 94.65 E-value: 2.05e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILaGYRETGMKGAVLING----LPRD------------LRCFRKVS 267
Cdd:PRK10619 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCI-NFLEKPSEGSIVVNGqtinLVRDkdgqlkvadknqLRLLRTRL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 268 CYIMQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILTALGLLSCANTRTGS-LSGGQRKRLAIALELVNNPPVM 346
Cdd:PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVhLSGGQQQRVSIARALAMEPEVL 174
|
170 180 190
....*....|....*....|....*....|....*..
gi 2462583501 347 FFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQ 383
Cdd:PRK10619 175 LFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
204-404 |
2.23e-21 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 94.45 E-value: 2.23e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLINGL------PRDLRCFRKVscyimqddmlL 277
Cdd:PRK13548 13 GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD-SGEVRLNGRpladwsPAELARRRAV----------L 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 PH-------LTVQE--AMMVSAHLKLQEKDegrREMVKEILTALGLLSCANTRTGSLSGG--QRKRLAIAL----ELVNN 342
Cdd:PRK13548 82 PQhsslsfpFTVEEvvAMGRAPHGLSRAED---DALVAAALAQVDLAHLAGRDYPQLSGGeqQRVQLARVLaqlwEPDGP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462583501 343 PPVMFFDEPTSGLDSASCFQVVSLMKGLA-QGGRSIICTIHqpSAKLFELF-DQLYVLSQGQCV 404
Cdd:PRK13548 159 PRWLLLDEPTSALDLAHQHHVLRLARQLAhERGLAVIVVLH--DLNLAARYaDRIVLLHQGRLV 220
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
209-407 |
2.24e-21 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 93.44 E-value: 2.24e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLP---RDLRCFRKVSCYIMQDDMLLPHlTVQEA 285
Cdd:cd03254 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP-QKGQILIDGIDirdISRKSLRSMIGVVLQDTFLFSG-TIMEN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 286 MMVSahlklqeKDEGRREMVKEILTAL-----------GLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSG 354
Cdd:cd03254 97 IRLG-------RPNATDEEVIEAAKEAgahdfimklpnGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSN 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2462583501 355 LDSASCFQVVSLMKGLAQGGRSIICTiHQPSAKLFElfDQLYVLSQGQCVYRG 407
Cdd:cd03254 170 IDTETEKLIQEALEKLMKGRTSIIIA-HRLSTIKNA--DKILVLDDGKIIEEG 219
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
209-382 |
3.02e-21 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 94.10 E-value: 3.02e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTL---MNILagyrETGMKGAVLINGL----------------PRDLRCFRKVSCY 269
Cdd:COG4598 24 LKGVSLTARKGDVISIIGSSGSGKSTFlrcINLL----ETPDSGEIRVGGEeirlkpdrdgelvpadRRQLQRIRTRLGM 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 270 IMQDDMLLPHLTVQE-AMMVSAHLKLQEKDEGRrEMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFF 348
Cdd:COG4598 100 VFQSFNLWSHMTVLEnVIEAPVHVLGRPKAEAI-ERAEALLAKVGLADKRDAYPAHLSGGQQQRAAIARALAMEPEVMLF 178
|
170 180 190
....*....|....*....|....*....|....
gi 2462583501 349 DEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIH 382
Cdd:COG4598 179 DEPTSALDPELVGEVLKVMRDLAEEGRTMLVVTH 212
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
206-407 |
3.46e-21 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 93.59 E-value: 3.46e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG---YRETGmkGAVLING-----LPRDLRC----FrkvscYIMQD 273
Cdd:COG0396 13 KEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGhpkYEVTS--GSILLDGedileLSPDERAragiF-----LAFQY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 274 DMLLPHLTVQEAMMVSAHLKLQEKDEGR--REMVKEILTALGL----LS-CANtrtGSLSGGQRKRLAIALELVNNPPVM 346
Cdd:COG0396 86 PVEIPGVSVSNFLRTALNARRGEELSARefLKLLKEKMKELGLdedfLDrYVN---EGFSGGEKKRNEILQMLLLEPKLA 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462583501 347 FFDEPTSGLDSAScFQVVS-LMKGLAQGGRSIICTIHQPsaKLFELF--DQLYVLSQGQCVYRG 407
Cdd:COG0396 163 ILDETDSGLDIDA-LRIVAeGVNKLRSPDRGILIITHYQ--RILDYIkpDFVHVLVDGRIVKSG 223
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
206-356 |
5.43e-21 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 95.78 E-value: 5.43e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLING-----LPRDLRCFRKVscyiMQDDMLLPHL 280
Cdd:PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF-ETPDSGRIMLDGqdithVPAENRHVNTV----FQSYALFPHM 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462583501 281 TVQEAmmVSAHLKLQE--KDEgRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:PRK09452 102 TVFEN--VAFGLRMQKtpAAE-ITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
197-424 |
7.94e-21 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 93.28 E-value: 7.94e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 197 PGDPMEegyKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLINGL---------PRDLRcfRKV 266
Cdd:TIGR04521 12 PGTPFE---KKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGlLKPT--SGTVTIDGRditakkkkkLKDLR--KKV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 267 ScYIMQddmlLPH-----LTVQEAMMVSAH-LKLQEKDEGRRemVKEILTALGL------LSCAntrtgSLSGGQRKRLA 334
Cdd:TIGR04521 85 G-LVFQ----FPEhqlfeETVYKDIAFGPKnLGLSEEEAEER--VKEALELVGLdeeyleRSPF-----ELSGGQMRRVA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 335 IALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQ-GGRSIICTIHQPSaKLFELFDQLYVLSQGQCVYRGK---VC 410
Cdd:TIGR04521 153 IAGVLAMEPEVLILDEPTAGLDPKGRKEILDLFKRLHKeKGLTVILVTHSME-DVAEYADRVIVMHKGKIVLDGTpreVF 231
|
250
....*....|....
gi 2462583501 411 NLVPYLRDLGLNCP 424
Cdd:TIGR04521 232 SDVDELEKIGLDVP 245
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
209-356 |
7.95e-21 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 94.37 E-value: 7.95e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTL---MNILagyrETGMKGAVLINGL------PRDLRCFR-KVScYIMQDDMLLP 278
Cdd:COG1135 21 LDDVSLTIEKGEIFGIIGYSGAGKSTLircINLL----ERPTSGSVLVDGVdltalsERELRAARrKIG-MIFQHFNLLS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 279 HLTVQEAmmVSAHLKLQ--EKDEgRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:COG1135 96 SRTVAEN--VALPLEIAgvPKAE-IRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALD 172
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
206-408 |
9.61e-21 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 91.91 E-value: 9.61e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGlpRDLR-----CFRKVSCYIMQDDMLL--- 277
Cdd:cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV-SSGSILIDG--QDIRevtldSLRRAIGVVPQDTVLFndt 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 -------PHLTVQEAMMVSA------HLKLQEKDEGRREMVKEiltalgllscantRTGSLSGGQRKRLAIALELVNNPP 344
Cdd:cd03253 91 igyniryGRPDATDEEVIEAakaaqiHDKIMRFPDGYDTIVGE-------------RGLKLSGGEKQRVAIARAILKNPP 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462583501 345 VMFFDEPTSGLDSASCFQVVSLMKGLAQgGRSIICTIHQPS----AklfelfDQLYVLSQGQCVYRGK 408
Cdd:cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLStivnA------DKIIVLKDGRIVERGT 218
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
209-417 |
1.25e-20 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 91.37 E-value: 1.25e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGLPRDLRCFRKVscYIMQDDMLLPHLTVQE--AM 286
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGL-AQPTSGGVILEGKQITEPGPDRM--VVFQNYSLLPWLTVREniAL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 287 MVSAHLKLQEKDEgRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVS- 365
Cdd:TIGR01184 78 AVDRVLPDLSKSE-RRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEe 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2462583501 366 LMKGLAQGGRSIICTIHQPSAKLFeLFDQLYVLSQGQCVYRGKVCNlVPYLR 417
Cdd:TIGR01184 157 LMQIWEEHRVTVLMVTHDVDEALL-LSDRVVMLTNGPAANIGQILE-VPFPR 206
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
209-407 |
1.74e-20 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 92.00 E-value: 1.74e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGY----RETGMKGAVLING------LPRDLRCFRKVSCYIMQDDMLLP 278
Cdd:PRK09984 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLitgdKSAGSHIELLGRTvqregrLARDIRKSRANTGYIFQQFNLVN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 279 HLTVQEAMMVSA-------HLKLQEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEP 351
Cdd:PRK09984 100 RLSVLENVLIGAlgstpfwRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEP 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462583501 352 TSGLDSASCFQVVSLMKGLAQG-GRSIICTIHQPSAKLfELFDQLYVLSQGQCVYRG 407
Cdd:PRK09984 180 IASLDPESARIVMDTLRDINQNdGITVVVTLHQVDYAL-RYCERIVALRQGHVFYDG 235
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
210-433 |
1.98e-20 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 93.94 E-value: 1.98e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 210 KGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRE--TG--MKGAVLINGLPRDLRCFRKVscyiMQDDMLLPHLTVQEA 285
Cdd:PRK11000 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDitSGdlFIGEKRMNDVPPAERGVGMV----FQSYALYPHLSVAEN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 286 MmvSAHLKLQEKDEG----RREMVKEILTALGLLscaNTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCF 361
Cdd:PRK11000 96 M--SFGLKLAGAKKEeinqRVNQVAEVLQLAHLL---DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRV 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462583501 362 Q----VVSLMKGLaqgGRSIICTIH-QPSAklFELFDQLYVLSQGQCVYRGKVCNLvpylrdlglncptYHNPAD-FV 433
Cdd:PRK11000 171 QmrieISRLHKRL---GRTMIYVTHdQVEA--MTLADKIVVLDAGRVAQVGKPLEL-------------YHYPANrFV 230
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
200-372 |
2.28e-20 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 92.81 E-value: 2.28e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 200 PMEEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTL----MNILAGYRETGmkGAVLINGL------PRDLRCFR--KVS 267
Cdd:COG0444 12 PTRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLaraiLGLLPPPGITS--GEILFDGEdllklsEKELRKIRgrEIQ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 268 cYIMQDDM--LLPHLTVQEAMM--VSAHLKLQEKDegRREMVKEILTALGLlSCANTRTGS----LSGGQRKRLAIALEL 339
Cdd:COG0444 90 -MIFQDPMtsLNPVMTVGDQIAepLRIHGGLSKAE--ARERAIELLERVGL-PDPERRLDRypheLSGGMRQRVMIARAL 165
|
170 180 190
....*....|....*....|....*....|....*.
gi 2462583501 340 VNNPPVMFFDEPTSGLD---SAscfQVVSLMKGLAQ 372
Cdd:COG0444 166 ALEPKLLIADEPTTALDvtiQA---QILNLLKDLQR 198
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
204-408 |
3.55e-20 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 92.18 E-value: 3.55e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLING--LPRDLRCFRKVSCYIMQDDMLLPHLT 281
Cdd:PRK13537 18 GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL-THPDAGSISLCGepVPSRARHARQRVGVVPQFDNLDPDFT 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 282 VQEAMMV-SAHLKLQEKDEgrREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASC 360
Cdd:PRK13537 97 VRENLLVfGRYFGLSAAAA--RALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQAR 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2462583501 361 FQVVSLMKGLAQGGRSIICTIH-QPSAKlfELFDQLYVLSQGQCVYRGK 408
Cdd:PRK13537 175 HLMWERLRSLLARGKTILLTTHfMEEAE--RLCDRLCVIEEGRKIAEGA 221
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
206-407 |
3.68e-20 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 90.34 E-value: 3.68e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGY--RETGmkgAVLING-----LPRDLRCFRKVScYIMQDDMLLP 278
Cdd:PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIvpRDAG---NIIIDDedislLPLHARARRGIG-YLPQEASIFR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 279 HLTVQEAMMVSAHLKLQEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSA 358
Cdd:PRK10895 92 RLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2462583501 359 SCFQVVSLMKGLAQGGRSIICTIHQPSAKLfELFDQLYVLSQGQCVYRG 407
Cdd:PRK10895 172 SVIDIKRIIEHLRDSGLGVLITDHNVRETL-AVCERAYIVSQGHLIAHG 219
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
182-404 |
3.70e-20 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 90.90 E-value: 3.70e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 182 LSAAHGAGRAYGWGfpGDPMEEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGLP---- 257
Cdd:PRK10419 3 LLNVSGLSHHYAHG--GLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL-ESPSQGNVSWRGEPlakl 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 258 --RDLRCFRKVSCYIMQDDM--LLPHLTV----QEAMMvsaHLkLQEKDEGRREMVKEILTALGL-LSCANTRTGSLSGG 328
Cdd:PRK10419 80 nrAQRKAFRRDIQMVFQDSIsaVNPRKTVreiiREPLR---HL-LSLDKAERLARASEMLRAVDLdDSVLDKRPPQLSGG 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462583501 329 QRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGL-AQGGRSIICTIHqpSAKLFELFDQ-LYVLSQGQCV 404
Cdd:PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLqQQFGTACLFITH--DLRLVERFCQrVMVMDNGQIV 231
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
196-356 |
3.96e-20 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 90.92 E-value: 3.96e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 196 FPGDPMEegyKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGmkGAVLING-----LPRDLRcfrkvSCY 269
Cdd:COG1101 12 NPGTVNE---KRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGsLPPDS--GSILIDGkdvtkLPEYKR-----AKY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 270 I---MQDDML--LPHLTVQEAMMVSAH------LKLQEKDEgRREMVKEILTALGL-----LscaNTRTGSLSGGQRKRL 333
Cdd:COG1101 82 IgrvFQDPMMgtAPSMTIEENLALAYRrgkrrgLRRGLTKK-RRELFRELLATLGLglenrL---DTKVGLLSGGQRQAL 157
|
170 180
....*....|....*....|...
gi 2462583501 334 AIALELVNNPPVMFFDEPTSGLD 356
Cdd:COG1101 158 SLLMATLTKPKLLLLDEHTAALD 180
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
204-440 |
4.37e-20 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 92.59 E-value: 4.37e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGM-KGAVLINGLPRDLRCFRKVSCYIMQDDMLLPHLTV 282
Cdd:PRK13536 52 GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAgKITVLGVPVPARARLARARIGVVPQFDNLDLEFTV 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 283 QEAMMV-SAHLKLQEKDegRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCF 361
Cdd:PRK13536 132 RENLLVfGRYFGMSTRE--IEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARH 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 362 QVVSLMKGLAQGGRSIICTIH-QPSAKlfELFDQLYVLSQGQCVYRGKVCNLVpylrDLGLNCPtyhnpadfVMEVASGE 440
Cdd:PRK13536 210 LIWERLRSLLARGKTILLTTHfMEEAE--RLCDRLCVLEAGRKIAEGRPHALI----DEHIGCQ--------VIEIYGGD 275
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
206-356 |
5.00e-20 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 90.09 E-value: 5.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILagyreTGM----KGAVLING-----LPRDLRC-------------F 263
Cdd:COG1137 16 RTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMI-----VGLvkpdSGRIFLDGedithLPMHKRArlgigylpqeasiF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 264 RKvscyimqddmllphLTVQEAMMvsAHLKLQEKD-EGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNN 342
Cdd:COG1137 91 RK--------------LTVEDNIL--AVLELRKLSkKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATN 154
|
170
....*....|....
gi 2462583501 343 PPVMFFDEPTSGLD 356
Cdd:COG1137 155 PKFILLDEPFAGVD 168
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
209-407 |
5.63e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 91.06 E-value: 5.63e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLPRD-----LRCFRKVSCYIMQ--DDMLLPHLT 281
Cdd:PRK13636 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP-SSGRILFDGKPIDysrkgLMKLRESVGMVFQdpDNQLFSASV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 282 VQEAMMVSAHLKLQEKDEGRRemVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCF 361
Cdd:PRK13636 101 YQDVSFGAVNLKLPEDEVRKR--VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2462583501 362 QVVSLMKGLAQG-GRSIICTIHqpSAKLFELF-DQLYVLSQGQCVYRG 407
Cdd:PRK13636 179 EIMKLLVEMQKElGLTIIIATH--DIDIVPLYcDNVFVMKEGRVILQG 224
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
209-404 |
7.39e-20 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 87.10 E-value: 7.39e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGmkGAVLINGlprdlrcfRKVScyimqddmllpHLTVQEAM- 286
Cdd:cd03216 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGlYKPDS--GEILVDG--------KEVS-----------FASPRDARr 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 287 ----MVSahlklQekdegrremvkeiltalgllscantrtgsLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQ 362
Cdd:cd03216 75 agiaMVY-----Q-----------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVER 120
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2462583501 363 VVSLMKGLAQGGRSIICTIHqpsaKLFELF---DQLYVLSQGQCV 404
Cdd:cd03216 121 LFKVIRRLRAQGVAVIFISH----RLDEVFeiaDRVTVLRDGRVV 161
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
208-408 |
7.84e-20 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 90.07 E-value: 7.84e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 208 LLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLP-----RDLRCFRKVSCYIMQD-DMLLPHLT 281
Cdd:PRK13638 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP-QKGAVLWQGKPldyskRGLLALRQQVATVFQDpEQQIFYTD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 282 VQEAMMVS-AHLKLQEKDEGRRemVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASC 360
Cdd:PRK13638 95 IDSDIAFSlRNLGVPEAEITRR--VDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2462583501 361 FQVVSLMKGLAQGGRSIICTIHQPSAkLFELFDQLYVLSQGQCVYRGK 408
Cdd:PRK13638 173 TQMIAIIRRIVAQGNHVIISSHDIDL-IYEISDAVYVLRQGQILTHGA 219
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
196-401 |
9.87e-20 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 89.37 E-value: 9.87e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 196 FPGDPMeegyktlLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLINGLP-RDLRCFRKVscyIMQDD 274
Cdd:PRK11248 11 YGGKPA-------LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ-HGSITLDGKPvEGPGAERGV---VFQNE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 275 MLLPHLTVQEAMMVSAHLKLQEKDEgRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSG 354
Cdd:PRK11248 80 GLLPWRNVQDNVAFGLQLAGVEKMQ-RLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGA 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2462583501 355 LDSASCFQVVSLMKGLAQG-GRSIICTIHQPSAKLFeLFDQLYVLSQG 401
Cdd:PRK11248 159 LDAFTREQMQTLLLKLWQEtGKQVLLITHDIEEAVF-MATELVLLSPG 205
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
212-356 |
1.16e-19 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 89.63 E-value: 1.16e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 212 ISGKFNSGELVAIMGPSGAGKSTLMNILAGYRE-TGmkGAVLINGLP---------RDLRcfRKVSCYIMQDDMLLPHLT 281
Cdd:cd03294 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEpTS--GKVLIDGQDiaamsrkelRELR--RKKISMVFQSFALLPHRT 118
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462583501 282 VQEAmmVSAHLKLQ-EKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:cd03294 119 VLEN--VAFGLEVQgVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
216-402 |
3.07e-19 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 93.54 E-value: 3.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 216 FNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLING--LPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLK 293
Cdd:TIGR01257 953 FYENQITAFLGHNGAGKTTTLSILTGLLPP-TSGTVLVGGkdIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK 1031
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 294 LQEKDEGRREMvKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQG 373
Cdd:TIGR01257 1032 GRSWEEAQLEM-EAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSG 1110
|
170 180
....*....|....*....|....*....
gi 2462583501 374 GRSIICTIHQPSAKLfeLFDQLYVLSQGQ 402
Cdd:TIGR01257 1111 RTIIMSTHHMDEADL--LGDRIAIISQGR 1137
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
204-409 |
4.17e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 87.66 E-value: 4.17e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG----YRETGMKGAVLING---LPRDLRCFRKVSCYIMQDDML 276
Cdd:PRK14247 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRlielYPEARVSGEVYLDGqdiFKMDVIELRRRVQMVFQIPNP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 277 LPHLTVQEAmmVSAHLKLQEKDEGRREM---VKEILTALGLLSCANTR----TGSLSGGQRKRLAIALELVNNPPVMFFD 349
Cdd:PRK14247 94 IPNLSIFEN--VALGLKLNRLVKSKKELqerVRWALEKAQLWDEVKDRldapAGKLSGGQQQRLCIARALAFQPEVLLAD 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 350 EPTSGLDSASCFQVVSLMKGLAQgGRSIICTIHQPsAKLFELFDQLYVLSQGQCVYRGKV 409
Cdd:PRK14247 172 EPTANLDPENTAKIESLFLELKK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPT 229
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
209-408 |
4.43e-19 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 87.59 E-value: 4.43e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGyrETGMKGAVLINGLP------RDLRCFRkvsCYIMQDDMLLPhltv 282
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAG--LLPGQGEILLNGRPlsdwsaAELARHR---AYLSQQQSPPF---- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 283 qeAMMVSAHLKLQEKDEGRREMVK----EILTALGLLSCANTRTGSLSGG--QRKRLAIALELV---NNPP--VMFFDEP 351
Cdd:COG4138 83 --AMPVFQYLALHQPAGASSEAVEqllaQLAEALGLEDKLSRPLTQLSGGewQRVRLAAVLLQVwptINPEgqLLLLDEP 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462583501 352 TSGLDSAScfQVV--SLMKGLAQGGRSIICTIHQPSAKLFELfDQLYVLSQGQCVYRGK 408
Cdd:COG4138 161 MNSLDVAQ--QAAldRLLRELCQQGITVVMSSHDLNHTLRHA-DRVWLLKQGKLVASGE 216
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
191-384 |
5.04e-19 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 91.27 E-value: 5.04e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 191 AYGWgfPGDPmeegykTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLP---RDLRCFRKVS 267
Cdd:TIGR02868 341 SAGY--PGAP------PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP-LQGEVTLDGVPvssLDQDEVRRRV 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 268 CYIMQDdmllPHL---TVQEAMMVSahlklqeKDEGRREMVKEILTALGLL-------SCANTRTG----SLSGGQRKRL 333
Cdd:TIGR02868 412 SVCAQD----AHLfdtTVRENLRLA-------RPDATDEELWAALERVGLAdwlralpDGLDTVLGeggaRLSGGERQRL 480
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2462583501 334 AIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGlAQGGRSIICTIHQP 384
Cdd:TIGR02868 481 ALARALLADAPILLLDEPTEHLDAETADELLEDLLA-ALSGRTVVLITHHL 530
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
209-407 |
1.08e-18 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 85.65 E-value: 1.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGyRETGMKGAVLINGLP-RDLRCFRKVS---CYIMQDDMLLPHLTVQE 284
Cdd:TIGR03410 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMG-LLPVKSGSIRLDGEDiTKLPPHERARagiAYVPQGREIFPRLTVEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 285 AMMVSahlkLQEKDEGRREMVKEILTALGLL-SCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGL------DS 357
Cdd:TIGR03410 95 NLLTG----LAALPRRSRKIPDEIYELFPVLkEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIqpsiikDI 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2462583501 358 AscfQVVSLMKglAQGGRSIIcTIHQPSAKLFELFDQLYVLSQGQCVYRG 407
Cdd:TIGR03410 171 G---RVIRRLR--AEGGMAIL-LVEQYLDFARELADRYYVMERGRVVASG 214
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
204-382 |
1.66e-18 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 85.91 E-value: 1.66e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAgyRETGM-KGAVLINGLP------RDLRcfRKVScyIM-QDDM 275
Cdd:COG4604 12 GGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMIS--RLLPPdSGEVLVDGLDvattpsRELA--KRLA--ILrQENH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 276 LLPHLTVQEamMVS----AHLK--LQEKDegrREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFD 349
Cdd:COG4604 86 INSRLTVRE--LVAfgrfPYSKgrLTAED---REIIDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVLAQDTDYVLLD 160
|
170 180 190
....*....|....*....|....*....|....
gi 2462583501 350 EPTSGLDSASCFQVVSLMKGLAQG-GRSIICTIH 382
Cdd:COG4604 161 EPLNNLDMKHSVQMMKLLRRLADElGKTVVIVLH 194
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
206-407 |
3.54e-18 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 88.75 E-value: 3.54e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG---YRetgmkGAVLINGLPR---DLRCFRKVSCYIMQDDmLLPH 279
Cdd:PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGflpYQ-----GSLKINGIELrelDPESWRKHLSWVGQNP-QLPH 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQEAMMVSAHLKLQEKDEG--RREMVKEILTAL--GLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGL 355
Cdd:PRK11174 437 GTLRDNVLLGNPDASDEQLQQalENAWVSEFLPLLpqGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASL 516
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2462583501 356 DSASCFQVVSLMKGLAQGGRSIICTiHQpsakLFEL--FDQLYVLSQGQCVYRG 407
Cdd:PRK11174 517 DAHSEQLVMQALNAASRRQTTLMVT-HQ----LEDLaqWDQIWVMQDGQIVQQG 565
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
204-407 |
3.55e-18 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 88.61 E-value: 3.55e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTlmNILAGYRETGMKGAVLINGLP------RDLRCFRKVSCYIMQD--DM 275
Cdd:PRK15134 297 DHNVVVKNISFTLRPGETLGLVGESGSGKST--TGLALLRLINSQGEIWFDGQPlhnlnrRQLLPVRHRIQVVFQDpnSS 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 276 LLPHLTVQEamMVSAHLKLQEKD---EGRREMVKEILTALGLLSCANTR-TGSLSGGQRKRLAIALELVNNPPVMFFDEP 351
Cdd:PRK15134 375 LNPRLNVLQ--IIEEGLRVHQPTlsaAQREQQVIAVMEEVGLDPETRHRyPAEFSGGQRQRIAIARALILKPSLIILDEP 452
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462583501 352 TSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRG 407
Cdd:PRK15134 453 TSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG 508
|
|
| NHLM_micro_ABC2 |
TIGR03797 |
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family ... |
209-356 |
4.73e-18 |
|
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274789 [Multi-domain] Cd Length: 686 Bit Score: 88.86 E-value: 4.73e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGLP---RDLRCFRKVSCYIMQDDMLLP------- 278
Cdd:TIGR03797 469 LDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF-ETPESGSVFYDGQDlagLDVQAVRRQLGVVLQNGRLMSgsifeni 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 279 ----HLTVQEAMMVSAHLKLqekDEGRREMvkeiltALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSG 354
Cdd:TIGR03797 548 aggaPLTLDEAWEAARMAGL---AEDIRAM------PMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSA 618
|
..
gi 2462583501 355 LD 356
Cdd:TIGR03797 619 LD 620
|
|
| type_I_sec_HlyB |
TIGR01846 |
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in ... |
208-408 |
5.76e-18 |
|
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273831 [Multi-domain] Cd Length: 694 Bit Score: 88.65 E-value: 5.76e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 208 LLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYReTGMKGAVLINGL------PRDLRcfRKVSCyIMQDDMLL---- 277
Cdd:TIGR01846 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-TPQHGQVLVDGVdlaiadPAWLR--RQMGV-VLQENVLFsrsi 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 --------PHLTVQE----AMMVSAHLKLQEKDEGRREMVKEiltalgllscantRTGSLSGGQRKRLAIALELVNNPPV 345
Cdd:TIGR01846 548 rdnialcnPGAPFEHvihaAKLAGAHDFISELPQGYNTEVGE-------------KGANLSGGQRQRIAIARALVGNPRI 614
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462583501 346 MFFDEPTSGLDSASCFQVVSLMKGLAQgGRSIICTIHQPSAklFELFDQLYVLSQGQCVYRGK 408
Cdd:TIGR01846 615 LIFDEATSALDYESEALIMRNMREICR-GRTVIIIAHRLST--VRACDRIIVLEKGQIAESGR 674
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
202-407 |
7.09e-18 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 81.98 E-value: 7.09e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 202 EEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLPRDL--RCFRKVSCYIMQDdmllPH 279
Cdd:cd03247 11 PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGVPVSDleKALSSLISVLNQR----PY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 L---TVQEAMmvsahlklqekdeGRRemvkeiltalgllscantrtgsLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:cd03247 86 LfdtTLRNNL-------------GRR----------------------FSGGERQRLALARILLQDAPIVLLDEPTVGLD 130
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2462583501 357 SASCFQVVSLMKGLAQgGRSIICTIHQPSAklFELFDQLYVLSQGQCVYRG 407
Cdd:cd03247 131 PITERQLLSLIFEVLK-DKTLIWITHHLTG--IEHMDKILFLENGKIIMQG 178
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
224-356 |
7.41e-18 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 85.62 E-value: 7.41e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 224 IMGPSGAGKSTLMNILAGYrETGMKGAVLING-----LPRDLRCFRKVscyiMQDDMLLPHLTVQEAmmVSAHLKLQEKD 298
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGF-EQPDSGSIMLDGedvtnVPPHLRHINMV----FQSYALFPHMTVEEN--VAFGLKMRKVP 73
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462583501 299 -EGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:TIGR01187 74 rAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALD 132
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
206-408 |
7.53e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 84.27 E-value: 7.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLINGL---PRDLRCFRKVSCYIMQD-DMLLPHL 280
Cdd:PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGlLKPQ--SGEIKIDGItisKENLKEIRKKIGIIFQNpDNQFIGA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 281 TVQEAMMVSahlkLQEKDEGRREM---VKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:PRK13632 100 TVEDDIAFG----LENKKVPPKKMkdiIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2462583501 358 ASCFQVVSLMKGLA-QGGRSIICTIHQPSAKLfeLFDQLYVLSQGQCVYRGK 408
Cdd:PRK13632 176 KGKREIKKIMVDLRkTRKKTLISITHDMDEAI--LADKVIVFSEGKLIAQGK 225
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
206-409 |
8.40e-18 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 83.46 E-value: 8.40e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG---YRETGmkGAVLING-----LPRDLRCfRKVSCYIMQDDMLL 277
Cdd:TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGhpsYEVTS--GTILFKGqdlleLEPDERA-RAGLFLAFQYPEEI 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 PHLTVQEAMMVSAHLKLQEKDEGR------REMVKEILTALGL---LSCANTRTGsLSGGQRKRLAIALELVNNPPVMFF 348
Cdd:TIGR01978 90 PGVSNLEFLRSALNARRSARGEEPldlldfEKLLKEKLALLDMdeeFLNRSVNEG-FSGGEKKRNEILQMALLEPKLAIL 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462583501 349 DEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPsaKLFELF--DQLYVLSQGQCVYRGKV 409
Cdd:TIGR01978 169 DEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ--RLLNYIkpDYVHVLLDGRIVKSGDV 229
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
206-409 |
8.57e-18 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 84.78 E-value: 8.57e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGmkGAVLINGLPRDLRCFRKVScYimqddM-----LLPH 279
Cdd:COG4152 14 KTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGiLAPDS--GEVLWDGEPLDPEDRRRIG-Y-----LpeergLYPK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQEAMMVSAHLKLQEKDEGRREMvKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSAS 359
Cdd:COG4152 86 MKVGEQLVYLARLKGLSKAEAKRRA-DEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEPFSGLDPVN 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2462583501 360 cfqvVSLMKG----LAQGGRSIICTIHQ-PSAKlfELFDQLYVLSQGQCVYRGKV 409
Cdd:COG4152 165 ----VELLKDvireLAAKGTTVIFSSHQmELVE--ELCDRIVIINKGRKVLSGSV 213
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
206-407 |
9.81e-18 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 83.15 E-value: 9.81e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGmkGAVLINGL-P--RDLRCFRKVSCYIMQDDMLLPHLT 281
Cdd:cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGlLQPTS--GEVRVAGLvPwkRRKKFLRRIGVVFGQKTQLWWDLP 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 282 VQEAMMVSAHLKLQEKDEGRREmVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCF 361
Cdd:cd03267 112 VIDSFYLLAAIYDLPPARFKKR-LDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2462583501 362 QVVSLMKGL-AQGGRSIICTIH--QPSAKlfeLFDQLYVLSQGQCVYRG 407
Cdd:cd03267 191 NIRNFLKEYnRERGTTVLLTSHymKDIEA---LARRVLVIDKGRLLYDG 236
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
206-382 |
1.37e-17 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 83.30 E-value: 1.37e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILaGYRETGMKGAVLINGLPR---DLRCF-RKVScYIMQDdmlLPH-- 279
Cdd:PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPSEGEILLDAQPLeswSSKAFaRKVA-YLPQQ---LPAae 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 -LTVQEAMMVSA---HLKLQEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGL 355
Cdd:PRK10575 99 gMTVRELVAIGRypwHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSAL 178
|
170 180
....*....|....*....|....*...
gi 2462583501 356 DSASCFQVVSLMKGLAQG-GRSIICTIH 382
Cdd:PRK10575 179 DIAHQVDVLALVHRLSQErGLTVIAVLH 206
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
201-382 |
1.53e-17 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 85.66 E-value: 1.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 201 MEEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLINGLPRDLRCFRKVSCYIM---QDDMLL 277
Cdd:PRK09536 11 VEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT-AGTVLVAGDDVEALSARAASRRVAsvpQDTSLS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 PHLTVQEA--MMVSAHL-KLQEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSG 354
Cdd:PRK09536 90 FEFDVRQVveMGRTPHRsRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTAS 169
|
170 180
....*....|....*....|....*...
gi 2462583501 355 LDSASCFQVVSLMKGLAQGGRSIICTIH 382
Cdd:PRK09536 170 LDINHQVRTLELVRRLVDDGKTAVAAIH 197
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
220-402 |
1.65e-17 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 84.78 E-value: 1.65e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 220 ELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGlprdlRCF-------------RKVScYIMQDDMLLPHLTVQEam 286
Cdd:TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGL-TRPDEGEIVLNG-----RTLfdsrkgiflppekRRIG-YVFQEARLFPHLSVRG-- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 287 mvsaHLKLQEKD---EGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQV 363
Cdd:TIGR02142 95 ----NLRYGMKRarpSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEI 170
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2462583501 364 VSLMKGLAQG-GRSIICTIHQPSaKLFELFDQLYVLSQGQ 402
Cdd:TIGR02142 171 LPYLERLHAEfGIPILYVSHSLQ-EVLRLADRVVVLEDGR 209
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
209-404 |
1.71e-17 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 86.12 E-value: 1.71e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGmkGAVLINGLPRDlrcFRKVS-------CYIMQDDMLLPHL 280
Cdd:PRK11288 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGnYQPDA--GSILIDGQEMR---FASTTaalaagvAIIYQELHLVPEM 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 281 TVQEAMMVsAHL--KLQEKDEGR-REMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:PRK11288 95 TVAENLYL-GQLphKGGIVNRRLlNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSA 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2462583501 358 ASCFQVVSLMKGLAQGGRSIICTIHQpSAKLFELFDQLYVLSQGQCV 404
Cdd:PRK11288 174 REIEQLFRVIRELRAEGRVILYVSHR-MEEIFALCDAITVFKDGRYV 219
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
207-384 |
1.93e-17 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 82.13 E-value: 1.93e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 207 TLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGLP---------RDLRCfRKVScYIMQDDMLL 277
Cdd:PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGL-DDGSSGEVSLVGQPlhqmdeearAKLRA-KHVG-FVFQSFMLI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 PHLTVQEAMMVSAHLKlQEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:PRK10584 101 PTLNALENVELPALLR-GESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDR 179
|
170 180
....*....|....*....|....*...
gi 2462583501 358 ASCFQVVSLMKGLAQG-GRSIICTIHQP 384
Cdd:PRK10584 180 QTGDKIADLLFSLNREhGTTLILVTHDL 207
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
209-408 |
2.35e-17 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 82.20 E-value: 2.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLP-RDL--RCFRKVSCYIMQDDMLL-------- 277
Cdd:cd03249 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP-TSGEILLDGVDiRDLnlRWLRSQIGLVSQEPVLFdgtiaeni 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 ----PHLTVQEAM----MVSAHLKLQEKDEGRREMVKEiltalgllscantRTGSLSGGQRKRLAIALELVNNPPVMFFD 349
Cdd:cd03249 98 rygkPDATDEEVEeaakKANIHDFIMSLPDGYDTLVGE-------------RGSQLSGGQKQRIAIARALLRNPKILLLD 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462583501 350 EPTSGLDSASCFQVvslMKGL--AQGGRSIICTIHQPS----AklfelfDQLYVLSQGQCVYRGK 408
Cdd:cd03249 165 EATSALDAESEKLV---QEALdrAMKGRTTIVIAHRLStirnA------DLIAVLQNGQVVEQGT 220
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
201-407 |
2.87e-17 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 81.03 E-value: 2.87e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 201 MEEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG---YRETgmKGAVLING-----LPRDLRcFRKVSCYIMQ 272
Cdd:cd03217 8 VSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGhpkYEVT--EGEILFKGeditdLPPEER-ARLGIFLAFQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 273 DDMLLPHLTVQEAmmvsahlkLQEKDEGrremvkeiltalgllscantrtgsLSGGQRKRLAIALELVNNPPVMFFDEPT 352
Cdd:cd03217 85 YPPEIPGVKNADF--------LRYVNEG------------------------FSGGEKKRNEILQLLLLEPDLAILDEPD 132
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462583501 353 SGLDSASCFQVVSLMKGLAQGGRSIICTIHQpsAKLFELF--DQLYVLSQGQCVYRG 407
Cdd:cd03217 133 SGLDIDALRLVAEVINKLREEGKSVLIITHY--QRLLDYIkpDRVHVLYDGRIVKSG 187
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
204-409 |
3.49e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 82.54 E-value: 3.49e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYReTGMKGAVLINGLP---RDLRCFRKVSCYIMQ--DDMLLP 278
Cdd:PRK13652 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL-KPTSGSVLIRGEPitkENIREVRKFVGLVFQnpDDQIFS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 279 HLTVQEAMMVSAHLKLQEKDEGRRemVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSA 358
Cdd:PRK13652 94 PTVEQDIAFGPINLGLDEETVAHR--VSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQ 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2462583501 359 SCFQVVSLMKGLAQG-GRSIICTIHQPSAkLFELFDQLYVLSQGQCVYRGKV 409
Cdd:PRK13652 172 GVKELIDFLNDLPETyGMTVIFSTHQLDL-VPEMADYIYVMDKGRIVAYGTV 222
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
178-356 |
4.86e-17 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 85.12 E-value: 4.86e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 178 SGKVLSAAHGAGRAYGwgfpgDpmeegyKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGyRETGMKGAVLIN-GL 256
Cdd:COG0488 311 LGKKVLELEGLSKSYG-----D------KTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAG-ELEPDSGTVKLGeTV 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 257 prdlrcfrKVScYIMQD-DMLLPHLTVQEAMMvsahlklQEKDEGRREMVKEILTALgLLS--CANTRTGSLSGGQRKRL 333
Cdd:COG0488 379 --------KIG-YFDQHqEELDPDKTVLDELR-------DGAPGGTEQEVRGYLGRF-LFSgdDAFKPVGVLSGGEKARL 441
|
170 180
....*....|....*....|...
gi 2462583501 334 AIALELVNNPPVMFFDEPTSGLD 356
Cdd:COG0488 442 ALAKLLLSPPNVLLLDEPTNHLD 464
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
204-372 |
5.27e-17 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 81.65 E-value: 5.27e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGLPrdLRCFRKVSCYIMQDDMLLPHLTVQ 283
Cdd:PRK11247 23 GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL-ETPSAGELLAGTAP--LAEAREDTRLMFQDARLLPWKKVI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 284 EAmmVSAHLKLQEKDEGRremvkEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQV 363
Cdd:PRK11247 100 DN--VGLGLKGQWRDAAL-----QALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM 172
|
....*....
gi 2462583501 364 VSLMKGLAQ 372
Cdd:PRK11247 173 QDLIESLWQ 181
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
211-356 |
6.17e-17 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 81.19 E-value: 6.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 211 GISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGmkGAVL-----INGLPrDLRCFRKVSCYIMQDDMLLPHLTVQE 284
Cdd:PRK11300 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGfYKPTG--GTILlrgqhIEGLP-GHQIARMGVVRTFQHVRLFREMTVIE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 285 AMMVSAHLKLQE-------KDEGRREMVKEILT-------ALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDE 350
Cdd:PRK11300 100 NLLVAQHQQLKTglfsgllKTPAFRRAESEALDraatwleRVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDE 179
|
....*.
gi 2462583501 351 PTSGLD 356
Cdd:PRK11300 180 PAAGLN 185
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
209-356 |
6.79e-17 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 82.97 E-value: 6.79e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGL------PRDlrcfRKVScyiM--QDDMLLPHL 280
Cdd:PRK11650 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL-ERITSGEIWIGGRvvnelePAD----RDIA---MvfQNYALYPHM 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462583501 281 TVQEAMmvsAH-LKLQ--EKDEgRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:PRK11650 92 SVRENM---AYgLKIRgmPKAE-IEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
212-356 |
7.29e-17 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 83.35 E-value: 7.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 212 ISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGLprDLRC---FRKVSCYIMQDDMLLPHLTVQEAMMV 288
Cdd:PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGF-EQPTAGQIMLDGV--DLSHvppYQRPINMMFQSYALFPHMTVEQNIAF 114
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462583501 289 SAHLKLQEKDEgRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:PRK11607 115 GLKQDKLPKAE-IASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
209-357 |
7.74e-17 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 82.85 E-value: 7.74e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNS-------------GELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLING--------LPRDLrcfrkvs 267
Cdd:PRK11432 9 LKNITKRFGSntvidnlnltikqGTMVTLLGPSGCGKTTVLRLVAGL-EKPTEGQIFIDGedvthrsiQQRDI------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 268 CYIMQDDMLLPHLTVQEAmmVSAHLKLQ--EKDEgRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPV 345
Cdd:PRK11432 81 CMVFQSYALFPHMSLGEN--VGYGLKMLgvPKEE-RKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKV 157
|
170
....*....|..
gi 2462583501 346 MFFDEPTSGLDS 357
Cdd:PRK11432 158 LLFDEPLSNLDA 169
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
208-402 |
1.12e-16 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 79.82 E-value: 1.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 208 LLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGmkGAVLINGLP---RDLRCFRKVSCYIMQDDMLLPH---- 279
Cdd:cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENfYQPQG--GQVLLDGKPisqYEHKYLHSKVSLVGQEPVLFARslqd 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 -----LTVQEAMMVSAHLKLQEKDEGRREMVKEILTALGllscanTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSG 354
Cdd:cd03248 107 niaygLQSCSFECVKEAAQKAHAHSFISELASGYDTEVG------EKGSQLSGGQKQRVAIARALIRNPQVLILDEATSA 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2462583501 355 LDSASCFQVVSLMKGLAQgGRSIICTIHQPSakLFELFDQLYVLSQGQ 402
Cdd:cd03248 181 LDAESEQQVQQALYDWPE-RRTVLVIAHRLS--TVERADQILVLDGGR 225
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
219-382 |
1.55e-16 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 79.51 E-value: 1.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 219 GELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLINGLPRdlRCFRKVSCYIMQDDML---LPhLTVQEAMMVS-----A 290
Cdd:TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLIPPA-KGTVKVAGASP--GKGWRHIGYVPQRHEFawdFP-ISVAHTVMSGrtghiG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 291 HLKLQEKDEGRreMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGL 370
Cdd:TIGR03771 82 WLRRPCVADFA--AVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL 159
|
170
....*....|..
gi 2462583501 371 AQGGRSIICTIH 382
Cdd:TIGR03771 160 AGAGTAILMTTH 171
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
209-408 |
1.67e-16 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 84.00 E-value: 1.67e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGmkGAVLINGLP-RDLRC---FRKVScyIMQDDMLLPHLTVQ 283
Cdd:TIGR00958 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNlYQPTG--GQVLLDGVPlVQYDHhylHRQVA--LVGQEPVLFSGSVR 572
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 284 EAM----------MVSAHLKLQEKDEGRREMVKEILTALGllscantRTGS-LSGGQRKRLAIALELVNNPPVMFFDEPT 352
Cdd:TIGR00958 573 ENIaygltdtpdeEIMAAAKAANAHDFIMEFPNGYDTEVG-------EKGSqLSGGQKQRIAIARALVRKPRVLILDEAT 645
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462583501 353 SGLDSASCFQVVSLMKglaQGGRSIICTIHQPSakLFELFDQLYVLSQGQCVYRGK 408
Cdd:TIGR00958 646 SALDAECEQLLQESRS---RASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGT 696
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
209-425 |
1.69e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 80.42 E-value: 1.69e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGL----PRDLRCFRKVSCYIMQD-DMLLPHLTVQ 283
Cdd:PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP-QKGKVLVSGIdtgdFSKLQGIRKLVGIVFQNpETQFVGRTVE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 284 EAMMVSAHLKLQEKDEGRReMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQV 363
Cdd:PRK13644 97 EDLAFGPENLCLPPIEIRK-RVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462583501 364 VSLMKGLAQGGRSIICTIHQpsakLFELF--DQLYVLSQGQCVYRGKVCNLV--PYLRDLGLNCPT 425
Cdd:PRK13644 176 LERIKKLHEKGKTIVYITHN----LEELHdaDRIIVMDRGKIVLEGEPENVLsdVSLQTLGLTPPS 237
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
209-378 |
3.35e-16 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 78.63 E-value: 3.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMN-ILAGYRETGmkGAVLI---NGL-------PRD---LRcfRKVSCYIMQdd 274
Cdd:COG4778 27 LDGVSFSVAAGECVALTGPSGAGKSTLLKcIYGNYLPDS--GSILVrhdGGWvdlaqasPREilaLR--RRTIGYVSQ-- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 275 mllpHLTV---QEAMMVSAH--LKLQEKDEGRREMVKEILTALGL------LSCANtrtgsLSGGQRKRLAIALELVNNP 343
Cdd:COG4778 101 ----FLRViprVSALDVVAEplLERGVDREEARARARELLARLNLperlwdLPPAT-----FSGGEQQRVNIARGFIADP 171
|
170 180 190
....*....|....*....|....*....|....*
gi 2462583501 344 PVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSII 378
Cdd:COG4778 172 PLLLLDEPTASLDAANRAVVVELIEEAKARGTAII 206
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
203-402 |
3.44e-16 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 82.40 E-value: 3.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 203 EGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLING--LPR-DLRCFRKVSCYIMQDDMLLPH 279
Cdd:TIGR01842 328 GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPP-TSGSVRLDGadLKQwDRETFGKHIGYLPQDVELFPG 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQ---------EAMMVSAHLKLQekdeGRREMvkeIL-------TALGllscanTRTGSLSGGQRKRLAIALELVNNP 343
Cdd:TIGR01842 407 TVAEniarfgenaDPEKIIEAAKLA----GVHEL---ILrlpdgydTVIG------PGGATLSGGQRQRIALARALYGDP 473
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462583501 344 PVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSakLFELFDQLYVLSQGQ 402
Cdd:TIGR01842 474 KLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGR 530
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
209-409 |
4.19e-16 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 80.62 E-value: 4.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTL---MNILagyrETGMKGAVLINGL------PRDLRCFRKVSCYIMQDDMLLPH 279
Cdd:PRK11153 21 LNNVSLHIPAGEIFGVIGASGAGKSTLircINLL----ERPTSGRVLVDGQdltalsEKELRKARRQIGMIFQHFNLLSS 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQEAmmVSAHLKLQEKDEGR-REMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSA 358
Cdd:PRK11153 97 RTVFDN--VALPLELAGTPKAEiKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2462583501 359 SCFQVVSLMKGL-AQGGRSIICTIHQPSA-KlfELFDQLYVLSQGQCVYRGKV 409
Cdd:PRK11153 175 TTRSILELLKDInRELGLTIVLITHEMDVvK--RICDRVAVIDAGRLVEQGTV 225
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
209-409 |
4.30e-16 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 82.14 E-value: 4.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLPRDlRCFRKVSC-----YIMQDDMLLPHLTVQ 283
Cdd:PRK09700 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP-TKGTITINNINYN-KLDHKLAAqlgigIIYQELSVIDELTVL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 284 EAMMVSAHLKlqEKDEG--------RREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGL 355
Cdd:PRK09700 99 ENLYIGRHLT--KKVCGvniidwreMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2462583501 356 DSASCFQVVSLMKGLAQGGRSIICTIHQpSAKLFELFDQLYVLSQGQCVYRGKV 409
Cdd:PRK09700 177 TNKEVDYLFLIMNQLRKEGTAIVYISHK-LAEIRRICDRYTVMKDGSSVCSGMV 229
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
209-378 |
4.91e-16 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 81.61 E-value: 4.91e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLINGLPRDLRCFRK-VSCYI-M--QDDMLLPHLTVQ 283
Cdd:COG3845 21 NDDVSLTVRPGEIHALLGENGAGKSTLMKILYGlYQPD--SGEILIDGKPVRIRSPRDaIALGIgMvhQHFMLVPNLTVA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 284 E----AMMVSAHLKLQEKDEgrREMVKEILTALGL---LscaNTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGL- 355
Cdd:COG3845 99 EnivlGLEPTKGGRLDRKAA--RARIRELSERYGLdvdP---DAKVEDLSVGEQQRVEILKALYRGARILILDEPTAVLt 173
|
170 180
....*....|....*....|....*
gi 2462583501 356 --DSASCFQVvslMKGLAQGGRSII 378
Cdd:COG3845 174 pqEADELFEI---LRRLAAEGKSII 195
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
202-384 |
1.01e-15 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 76.38 E-value: 1.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 202 EEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG--YRETGmkgAVLINGLP-RDLR-CFRKVSCYIMQDDMLL 277
Cdd:PRK13538 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGlaRPDAG---EVLWQGEPiRRQRdEYHQDLLYLGHQPGIK 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 PHLTVQEAMMVSAHLKlqekDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:PRK13538 87 TELTALENLRFYQRLH----GPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDK 162
|
170 180
....*....|....*....|....*..
gi 2462583501 358 ASCFQVVSLMKGLAQGGRSIICTIHQP 384
Cdd:PRK13538 163 QGVARLEALLAQHAEQGGMVILTTHQD 189
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
206-402 |
1.79e-15 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 80.18 E-value: 1.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGmkGAVLINGlpRDLRCFRKVSC-----YIMQDDMLLPH 279
Cdd:COG4618 345 RPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGvWPPTA--GSVRLDG--ADLSQWDREELgrhigYLPQDVELFDG 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 lTVQE----------------AMMVSAHlklqekdegrrEMvkeILT-ALGLlscaNTRTGS----LSGGQRKRLAIALE 338
Cdd:COG4618 421 -TIAEniarfgdadpekvvaaAKLAGVH-----------EM---ILRlPDGY----DTRIGEggarLSGGQRQRIGLARA 481
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462583501 339 LVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSakLFELFDQLYVLSQGQ 402
Cdd:COG4618 482 LYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHRPS--LLAAVDKLLVLRDGR 543
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
207-407 |
2.00e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 77.97 E-value: 2.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 207 TLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGY---------------RETGMKGAVLINGLPRDLRCF---RKVSC 268
Cdd:PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLikskygtiqvgdiyiGDKKNNHELITNPYSKKIKNFkelRRRVS 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 269 YIMQ-DDMLLPHLTVQEAMMVSAhLKLQEKDEGRREMVKEILTALGLLSCANTRTG-SLSGGQRKRLAIALELVNNPPVM 346
Cdd:PRK13631 120 MVFQfPEYQLFKDTIEKDIMFGP-VALGVKKSEAKKLAKFYLNKMGLDDSYLERSPfGLSGGQKRRVAIAGILAIQPEIL 198
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462583501 347 FFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQpSAKLFELFDQLYVLSQGQCVYRG 407
Cdd:PRK13631 199 IFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT-MEHVLEVADEVIVMDKGKILKTG 258
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
209-408 |
2.12e-15 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 79.87 E-value: 2.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLINGLPrdLRCFRkvscyimqDDMLLPHLTV--QEAM 286
Cdd:PRK11160 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ-QGEILLNGQP--IADYS--------EAALRQAISVvsQRVH 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 287 MVSAHLK---LQEKDEGRREMVKEILTALGLLSCANTRTG----------SLSGGQRKRLAIALELVNNPPVMFFDEPTS 353
Cdd:PRK11160 425 LFSATLRdnlLLAAPNASDEALIEVLQQVGLEKLLEDDKGlnawlgeggrQLSGGEQRRLGIARALLHDAPLLLLDEPTE 504
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2462583501 354 GLDSASCFQVVSLMKGLAQgGRSIICTIHQpsAKLFELFDQLYVLSQGQCVYRGK 408
Cdd:PRK11160 505 GLDAETERQILELLAEHAQ-NKTVLMITHR--LTGLEQFDRICVMDNGQIIEQGT 556
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
204-407 |
2.20e-15 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 79.73 E-value: 2.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTL-MNILagyRETGMKGAVLINGLP------RDLRCFRK---VscyIMQD 273
Cdd:COG4172 297 GHVKAVDGVSLTLRRGETLGLVGESGSGKSTLgLALL---RLIPSEGEIRFDGQDldglsrRALRPLRRrmqV---VFQD 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 274 DM--LLPHLTV----QEAMMVsahLKLQEKDEGRREMVKEILTALGLLscANTRT---GSLSGGQRKRLAIALELVNNPP 344
Cdd:COG4172 371 PFgsLSPRMTVgqiiAEGLRV---HGPGLSAAERRARVAEALEEVGLD--PAARHrypHEFSGGQRQRIAIARALILEPK 445
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462583501 345 VMFFDEPTSGLDSASCFQVVSLMKGLaQGGRSIictihqpsAKLF---------ELFDQLYVLSQGQCVYRG 407
Cdd:COG4172 446 LLVLDEPTSALDVSVQAQILDLLRDL-QREHGL--------AYLFishdlavvrALAHRVMVMKDGKVVEQG 508
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
209-407 |
2.49e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 77.08 E-value: 2.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYReTGMKGAVLINGL---PRDLRCFRKVSCYIMQD--DMLLPHLTVQ 283
Cdd:PRK13647 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY-LPQRGRVKVMGRevnAENEKWVRSKVGLVFQDpdDQVFSSTVWD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 284 EAMMVSAHLKLQEKDEGRRemVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQV 363
Cdd:PRK13647 100 DVAFGPVNMGLDKDEVERR--VEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETL 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2462583501 364 VSLMKGLAQGGRSIICTIHQPSAKLfELFDQLYVLSQGQCVYRG 407
Cdd:PRK13647 178 MEILDRLHNQGKTVIVATHDVDLAA-EWADQVIVLKEGRVLAEG 220
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
204-382 |
4.02e-15 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 75.30 E-value: 4.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLING------LPRDLRCFRKVSCYIMQDDMLL 277
Cdd:PRK10908 13 GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI-ERPSAGKIWFSGhditrlKNREVPFLRRQIGMIFQDHHLL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 PHLTVQEAMMVSAHLKLQEKDEGRREmVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:PRK10908 92 MDRTVYDNVAIPLIIAGASGDDIRRR-VSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDD 170
|
170 180
....*....|....*....|....*
gi 2462583501 358 ASCFQVVSLMKGLAQGGRSIICTIH 382
Cdd:PRK10908 171 ALSEGILRLFEEFNRVGVTVLMATH 195
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
206-407 |
4.59e-15 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 75.85 E-value: 4.59e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRET-----GMKGAVLING---LPRDLRCFRKVSCYIMQDDMLL 277
Cdd:PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIydskiKVDGKVLYFGkdiFQIDAIKLRKEVGMVFQQPNPF 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 PHLTVQE--AMMVSAHlKLQEKDEGRReMVKEILTALGLLSCANTRTGS----LSGGQRKRLAIALELVNNPPVMFFDEP 351
Cdd:PRK14246 103 PHLSIYDniAYPLKSH-GIKEKREIKK-IVEECLRKVGLWKEVYDRLNSpasqLSGGQQQRLTIARALALKPKVLLMDEP 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462583501 352 TSGLDSASCFQVVSLMKGLaQGGRSIICTIHQPSaKLFELFDQLYVLSQGQCVYRG 407
Cdd:PRK14246 181 TSMIDIVNSQAIEKLITEL-KNEIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWG 234
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
223-359 |
5.71e-15 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 77.06 E-value: 5.71e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 223 AIMGPSGAGKSTLMNILAGYrETGMKGAVLINGLP---RDLRCF-----RKVScYIMQDDMLLPHLTVQEammvsaHLKL 294
Cdd:COG4148 29 ALFGPSGSGKTTLLRAIAGL-ERPDSGRIRLGGEVlqdSARGIFlpphrRRIG-YVFQEARLFPHLSVRG------NLLY 100
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462583501 295 QEKDEGRREM---VKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSAS 359
Cdd:COG4148 101 GRKRAPRAERrisFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLAR 168
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
197-382 |
6.46e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 76.02 E-value: 6.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 197 PGDPMEegyKTLLKGISGKFNSGELVAIMGPSGAGKSTLM---NIL----------AGYR---ETGMKGAvlinglpRDL 260
Cdd:PRK13641 14 PGTPME---KKGLDNISFELEEGSFVALVGHTGSGKSTLMqhfNALlkpssgtitiAGYHitpETGNKNL-------KKL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 261 RcfRKVSCYIMQDDMLLPHLTVQEAMMVSAhLKLQEKDEGRREMVKEILTALGL-LSCANTRTGSLSGGQRKRLAIALEL 339
Cdd:PRK13641 84 R--KKVSLVFQFPEAQLFENTVLKDVEFGP-KNFGFSEDEAKEKALKWLKKVGLsEDLISKSPFELSGGQMRRVAIAGVM 160
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2462583501 340 VNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIH 382
Cdd:PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTH 203
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
209-404 |
7.51e-15 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 74.92 E-value: 7.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGY-RETgmKGAVLINGlpRDL------RCFRKVSCYIMQDDMLLPHLT 281
Cdd:PRK11614 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDpRAT--SGRIVFDG--KDItdwqtaKIMREAVAIVPEGRRVFSRMT 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 282 VQEAMMVSAHLKLQEKDEGRREMVKEILTALglLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCF 361
Cdd:PRK11614 97 VEENLAMGGFFAERDQFQERIKWVYELFPRL--HERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQ 174
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2462583501 362 QVVSLMKGLAQGGRSIIcTIHQPSAKLFELFDQLYVLSQGQCV 404
Cdd:PRK11614 175 QIFDTIEQLREQGMTIF-LVEQNANQALKLADRGYVLENGHVV 216
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
197-426 |
7.66e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 75.85 E-value: 7.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 197 PGDPMEegyKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLP--------RDLRcfRKVSC 268
Cdd:PRK13637 14 EGTPFE---KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP-TSGKIIIDGVDitdkkvklSDIR--KKVGL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 269 YIMQDDMLLPHLTVQEAMMVS-AHLKLQEKDEGRRemVKEILTALGLlSCANTRTGS---LSGGQRKRLAIALELVNNPP 344
Cdd:PRK13637 88 VFQYPEYQLFEETIEKDIAFGpINLGLSEEEIENR--VKRAMNIVGL-DYEDYKDKSpfeLSGGQKRRVAIAGVVAMEPK 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 345 VMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRGK---VCNLVPYLRDLGL 421
Cdd:PRK13637 165 ILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTpreVFKEVETLESIGL 244
|
....*..
gi 2462583501 422 NCP--TY 426
Cdd:PRK13637 245 AVPqvTY 251
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
199-402 |
9.18e-15 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 73.66 E-value: 9.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 199 DPMEEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGyrETG-MKGAVLINGlprdlrcfrKVScyimqddmll 277
Cdd:cd03250 11 DSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLG--ELEkLSGSVSVPG---------SIA---------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 phLTVQEAMMVSAHLK-----LQEKDEgrrEMVKEILTAlgllsCA------------NTRTG----SLSGGQRKRLAIA 336
Cdd:cd03250 70 --YVSQEPWIQNGTIRenilfGKPFDE---ERYEKVIKA-----CAlepdleilpdgdLTEIGekgiNLSGGQKQRISLA 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462583501 337 LELVNNPPVMFFDEPTSGLDSA-------SCFQvvslmkGLAQGGRSIICTIHQPSakLFELFDQLYVLSQGQ 402
Cdd:cd03250 140 RAVYSDADIYLLDDPLSAVDAHvgrhifeNCIL------GLLLNNKTRILVTHQLQ--LLPHADQIVVLDNGR 204
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
209-408 |
1.30e-14 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 77.40 E-value: 1.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGLPrdlrCFR-------KVSCYIM-QDDMLLPHL 280
Cdd:PRK15439 27 LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI-VPPDSGTLEIGGNP----CARltpakahQLGIYLVpQEPLLFPNL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 281 TVQEAMMvsahLKLQeKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASC 360
Cdd:PRK15439 102 SVKENIL----FGLP-KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAET 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2462583501 361 FQVVSLMKGLAQGGRSIICTIHqpsaKLFE---LFDQLYVLSQGQCVYRGK 408
Cdd:PRK15439 177 ERLFSRIRELLAQGVGIVFISH----KLPEirqLADRISVMRDGTIALSGK 223
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
209-407 |
4.68e-14 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 74.68 E-value: 4.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLP---------RDLRcfRKVSCYIMQDDMLLPH 279
Cdd:PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP-TRGQVLIDGVDiakisdaelREVR--RKKIAMVFQSFALMPH 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQEAMMVSAHLKLQEKDEgRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSAS 359
Cdd:PRK10070 121 MTVLDNTAFGMELAGINAEE-RREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLI 199
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2462583501 360 CFQVV-SLMKGLAQGGRSIICTIHQPSAKLfELFDQLYVLSQGQCVYRG 407
Cdd:PRK10070 200 RTEMQdELVKLQAKHQRTIVFISHDLDEAM-RIGDRIAIMQNGEVVQVG 247
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
207-382 |
7.21e-14 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 72.61 E-value: 7.21e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 207 TLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLINGLPRDLRCFRKVSCYIMQD---DMLLPHLTVQ 283
Cdd:PRK15056 21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA-SGKISILGQPTRQALQKNLVAYVPQSeevDWSFPVLVED 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 284 EAMMVS-AHLKLQEKDEGR-REMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCF 361
Cdd:PRK15056 100 VVMMGRyGHMGWLRRAKKRdRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEA 179
|
170 180
....*....|....*....|.
gi 2462583501 362 QVVSLMKGLAQGGRSIICTIH 382
Cdd:PRK15056 180 RIISLLRELRDEGKTMLVSTH 200
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
205-356 |
8.48e-14 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 73.20 E-value: 8.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 205 YKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILagyreTGM----KGAVLINGL-P-RDLRCFRK---VscyIM-QDD 274
Cdd:COG4586 34 EVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKML-----TGIlvptSGEVRVLGYvPfKRRKEFARrigV---VFgQRS 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 275 MLLPHLTVQEAMMVSAHL-KLQEKD-EGRREMVKEILTALGLLscaNTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPT 352
Cdd:COG4586 106 QLWWDLPAIDSFRLLKAIyRIPDAEyKKRLDELVELLDLGELL---DTPVRQLSLGQRMRCELAAALLHRPKILFLDEPT 182
|
....
gi 2462583501 353 SGLD 356
Cdd:COG4586 183 IGLD 186
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
206-380 |
1.05e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 72.05 E-value: 1.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNIL-------AGYRETGmkgAVLINGLP----RDLRCFRKVSCYIMQDD 274
Cdd:PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLnrmndkvSGYRYSG---DVLLGGRSifnyRDVLEFRRRVGMLFQRP 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 275 MLLPHLTVQEAMM-VSAHlKLQEKDEgRREMVKEILTALGLLSCANTRTGS----LSGGQRKRLAIALELVNNPPVMFFD 349
Cdd:PRK14271 111 NPFPMSIMDNVLAgVRAH-KLVPRKE-FRGVAQARLTEVGLWDAVKDRLSDspfrLSGGQQQLLCLARTLAVNPEVLLLD 188
|
170 180 190
....*....|....*....|....*....|.
gi 2462583501 350 EPTSGLDSASCFQVVSLMKGLAQGGRSIICT 380
Cdd:PRK14271 189 EPTSALDPTTTEKIEEFIRSLADRLTVIIVT 219
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
212-408 |
1.18e-13 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 71.50 E-value: 1.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 212 ISGKFNSGELVAIMGPSGAGKSTLMNILAGYreTGMKGAVLINGLP------RDLRCFRkvsCYIMQDDMLLPHLTVQEA 285
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGL--LPGSGSIQFAGQPleawsaAELARHR---AYLSQQQTPPFAMPVFQY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 286 MMVSAHLKLQEKDEgrREMVKEILTALGLLSCANTRTGSLSGG--QRKRLAIALELV---NNP--PVMFFDEPTSGLDSA 358
Cdd:PRK03695 90 LTLHQPDKTRTEAV--ASALNEVAEALGLDDKLGRSVNQLSGGewQRVRLAAVVLQVwpdINPagQLLLLDEPMNSLDVA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2462583501 359 scfQVV---SLMKGLAQGGRSIICTIHQPSAKLFELfDQLYVLSQGQCVYRGK 408
Cdd:PRK03695 168 ---QQAaldRLLSELCQQGIAVVMSSHDLNHTLRHA-DRVWLLKQGKLLASGR 216
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
209-358 |
1.45e-13 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 74.23 E-value: 1.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILA-GYRETGmkGAVLINGLP-RD--LRCFRKVSCYIMQDDMLLphltvqe 284
Cdd:PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQrVFDPQS--GRILIDGTDiRTvtRASLRRNIAVVFQDAGLF------- 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 285 AMMVSAHLKLQEKDEGRREMVK--EILTALGLL----SCANTRTG----SLSGGQRKRLAIALELVNNPPVMFFDEPTSG 354
Cdd:PRK13657 422 NRSIEDNIRVGRPDATDEEMRAaaERAQAHDFIerkpDGYDTVVGergrQLSGGERQRLAIARALLKDPPILILDEATSA 501
|
....
gi 2462583501 355 LDSA 358
Cdd:PRK13657 502 LDVE 505
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
204-401 |
1.67e-13 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 72.81 E-value: 1.67e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGL------PRDlrcfRKVScYIMQDDMLL 277
Cdd:PRK10851 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL-EHQTSGHIRFHGTdvsrlhARD----RKVG-FVFQHYALF 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 PHLTVQEAmmVSAHLKLQEKDEgR------REMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEP 351
Cdd:PRK10851 87 RHMTVFDN--IAFGLTVLPRRE-RpnaaaiKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEP 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462583501 352 TSGLDSascfQV-VSLMKGLAQGGR-----SIICTIHQPSAklFELFDQLYVLSQG 401
Cdd:PRK10851 164 FGALDA----QVrKELRRWLRQLHEelkftSVFVTHDQEEA--MEVADRVVVMSQG 213
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
209-437 |
1.73e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 71.32 E-value: 1.73e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGLP---RDLRCFRKVSCYIMQD-DMLLPHLTVQ- 283
Cdd:PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI-EKVKSGEIFYNNQAitdDNFEKLRKHIGIVFQNpDNQFVGSIVKy 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 284 ------EAMMVSaHLKLQEKdegrremVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:PRK13648 104 dvafglENHAVP-YDEMHRR-------VSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDP 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 358 ASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELfDQLYVLSQGQCVYRGK---VCNLVPYLRDLGLNCPtyhnpadFVM 434
Cdd:PRK13648 176 DARQNLLDLVRKVKSEHNITIISITHDLSEAMEA-DHVIVMNKGTVYKEGTpteIFDHAEELTRIGLDLP-------FPI 247
|
...
gi 2462583501 435 EVA 437
Cdd:PRK13648 248 KIN 250
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
204-385 |
2.15e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 71.03 E-value: 2.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMN----ILAGYRETGMKGAVLINGL--------PRDLRcfRKVScYIM 271
Cdd:PRK14267 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRtfnrLLELNEEARVEGEVRLFGRniyspdvdPIEVR--REVG-MVF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 272 QDDMLLPHLTVQEAmmVSAHLKLQEKDEGRREMVKEILTALGLLSC-------ANTRTGSLSGGQRKRLAIALELVNNPP 344
Cdd:PRK14267 92 QYPNPFPHLTIYDN--VAIGVKLNGLVKSKKELDERVEWALKKAALwdevkdrLNDYPSNLSGGQRQRLVIARALAMKPK 169
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2462583501 345 VMFFDEPTSGLDSASCFQVVSLMKGLAQgGRSIICTIHQPS 385
Cdd:PRK14267 170 ILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA 209
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
209-402 |
2.52e-13 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 73.04 E-value: 2.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGMKGAVLINGLP------RDLRcfRKVSCYIMQDDMLLPHLT 281
Cdd:PRK13549 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGvYPHGTYEGEIIFEGEElqasniRDTE--RAGIAIIHQELALVKELS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 282 VQEAMMVSAhlklqEKDEGRR----EMV---KEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSG 354
Cdd:PRK13549 99 VLENIFLGN-----EITPGGImdydAMYlraQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTAS 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2462583501 355 LDSASCFQVVSLMKGLAQGGRSIICTIHqpsaKLFELF---DQLYVLSQGQ 402
Cdd:PRK13549 174 LTESETAVLLDIIRDLKAHGIACIYISH----KLNEVKaisDTICVIRDGR 220
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
210-402 |
2.93e-13 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 72.89 E-value: 2.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 210 KGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKGAVLINGL---PRD-LRCFRKVSCYIMQ---DDMLLPHLTV 282
Cdd:PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGV-DKRAGGEIRLNGKdisPRSpLDAVKKGMAYITEsrrDNGFFPNFSI 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 283 QEAMMVSAHLKL----------QEKDEGR-REMVKEILTalglLSCA--NTRTGSLSGGQRKRLAIALELVNNPPVMFFD 349
Cdd:PRK09700 359 AQNMAISRSLKDggykgamglfHEVDEQRtAENQRELLA----LKCHsvNQNITELSGGNQQKVLISKWLCCCPEVIIFD 434
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462583501 350 EPTSGLDSASCFQVVSLMKGLAQGGRSIICTihqpSAKLFELF---DQLYVLSQGQ 402
Cdd:PRK09700 435 EPTRGIDVGAKAEIYKVMRQLADDGKVILMV----SSELPEIItvcDRIAVFCEGR 486
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
186-402 |
3.06e-13 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 69.87 E-value: 3.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 186 HGAGRAYGWGFPGDPMEEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLINGlprdlrcfr 264
Cdd:cd03220 15 GGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGiYPPD--SGTVTVRG--------- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 265 KVSCYIMQDDMLLPHLTVQE-AMMVSAHLKLQEKDegRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNP 343
Cdd:cd03220 84 RVSSLLGLGGGFNPELTGREnIYLNGRLLGLSRKE--IDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEP 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462583501 344 PVMFFDEPTSGLDSAscFQ--VVSLMKGLAQGGRSIICTIHQPSAkLFELFDQLYVLSQGQ 402
Cdd:cd03220 162 DILLIDEVLAVGDAA--FQekCQRRLRELLKQGKTVILVSHDPSS-IKRLCDRALVLEKGK 219
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
209-407 |
3.45e-13 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 73.13 E-value: 3.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLprDLRcfrkvscyimqdDMLLPHLTVQEAMmV 288
Cdd:PRK11176 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI-DEGEILLDGH--DLR------------DYTLASLRNQVAL-V 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 289 SAHLKL-----------QEKDEGRREmvkEILTAlGLLSCA-----------NTRTG----SLSGGQRKRLAIALELVNN 342
Cdd:PRK11176 423 SQNVHLfndtianniayARTEQYSRE---QIEEA-ARMAYAmdfinkmdnglDTVIGengvLLSGGQRQRIAIARALLRD 498
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462583501 343 PPVMFFDEPTSGLDSASCFQVVSLMKGLaQGGRSIICTIHQPSAklFELFDQLYVLSQGQCVYRG 407
Cdd:PRK11176 499 SPILILDEATSALDTESERAIQAALDEL-QKNRTSLVIAHRLST--IEKADEILVVEDGEIVERG 560
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
209-359 |
4.70e-13 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 69.06 E-value: 4.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLP------RDLRcfRKVSCyIMQDDMLL----- 277
Cdd:cd03244 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL-SSGSILIDGVDiskiglHDLR--SRISI-IPQDPVLFsgtir 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 ----PHLTVQEAMMVSA----HLKlqekdegrrEMVKEILTALGLLSCANtrTGSLSGGQRKRLAIALELVNNPPVMFFD 349
Cdd:cd03244 96 snldPFGEYSDEELWQAlervGLK---------EFVESLPGGLDTVVEEG--GENLSVGQRQLLCLARALLRKSKILVLD 164
|
170
....*....|
gi 2462583501 350 EPTSGLDSAS 359
Cdd:cd03244 165 EATASVDPET 174
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
209-372 |
4.97e-13 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 69.68 E-value: 4.97e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTL------MNILagYRETGMKGAVLINGL--------PRDLRcfRKVScYIMQDD 274
Cdd:COG1117 27 LKDINLDIPENKVTALIGPSGCGKSTLlrclnrMNDL--IPGARVEGEILLDGEdiydpdvdVVELR--RRVG-MVFQKP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 275 MLLPHlTVQEAmmVSAHLKLQE-KDegRREM---VKEILTALGL-------LscaNTRTGSLSGGQRKRLAIALELVNNP 343
Cdd:COG1117 102 NPFPK-SIYDN--VAYGLRLHGiKS--KSELdeiVEESLRKAALwdevkdrL---KKSALGLSGGQQQRLCIARALAVEP 173
|
170 180
....*....|....*....|....*....
gi 2462583501 344 PVMFFDEPTSGLDSASCFQVVSLMKGLAQ 372
Cdd:COG1117 174 EVLLMDEPTSALDPISTAKIEELILELKK 202
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
192-407 |
5.61e-13 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 72.46 E-value: 5.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 192 YGWGFpGDPmeegyktLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLINGLPR---DLRCFRKVSC 268
Cdd:TIGR01193 481 YSYGY-GSN-------ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR-SGEILLNGFSLkdiDRHTLRQFIN 551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 269 YIMQDDMLLPHlTVQEAMMVSAHLKLQEKDEGRREMVKEILT-----ALGLLSCANTRTGSLSGGQRKRLAIALELVNNP 343
Cdd:TIGR01193 552 YLPQEPYIFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDdienmPLGYQTELSEEGSSISGGQKQRIALARALLTDS 630
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462583501 344 PVMFFDEPTSGLDSASCFQVVSLMKGLAQggRSIICTIHQPSakLFELFDQLYVLSQGQCVYRG 407
Cdd:TIGR01193 631 KVLILDESTSNLDTITEKKIVNNLLNLQD--KTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQG 690
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
198-429 |
9.12e-13 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 69.24 E-value: 9.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 198 GDPMEEGY--KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYReTGMKGAVLINGLPRDLRCFRKVSCYI---MQ 272
Cdd:PRK10253 10 GEQLTLGYgkYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM-TPAHGHVWLDGEHIQHYASKEVARRIgllAQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 273 DDMLLPHLTVQEAMMVSAH------LKLQEKDEgrrEMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVM 346
Cdd:PRK10253 89 NATTPGDITVQELVARGRYphqplfTRWRKEDE---EAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIM 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 347 FFDEPTSGLDSASCFQVVSLMKGL-AQGGRSIICTIHQPSaKLFELFDQLYVLSQGQCVYRGKVCNLV-PYL--RDLGLN 422
Cdd:PRK10253 166 LLDEPTTWLDISHQIDLLELLSELnREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKEIVtAELieRIYGLR 244
|
....*..
gi 2462583501 423 CPTYHNP 429
Cdd:PRK10253 245 CMIIDDP 251
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
207-404 |
1.20e-12 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 71.01 E-value: 1.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 207 TLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGMKGAVLINGLP------RDLRcfRKVSCYIMQDDMLLPH 279
Cdd:TIGR02633 15 KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGvYPHGTWDGEIYWSGSPlkasniRDTE--RAGIVIIHQELTLVPE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQEAMMVSAHLKLQEKDEGRREMV---KEILTALGLLSCANTR-TGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGL 355
Cdd:TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYlraKNLLRELQLDADNVTRpVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2462583501 356 DSASCFQVVSLMKGLAQGGRSIICTIHqpsaKLFE---LFDQLYVLSQGQCV 404
Cdd:TIGR02633 173 TEKETEILLDIIRDLKAHGVACVYISH----KLNEvkaVCDTICVIRDGQHV 220
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
209-402 |
1.93e-12 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 66.30 E-value: 1.93e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLPRDLRCFRKVS----CYIMQD---DMLLPHLT 281
Cdd:cd03215 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP-ASGEITLDGKPVTRRSPRDAIragiAYVPEDrkrEGLVLDLS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 282 VQEAMMVSAHLklqekdegrremvkeiltalgllscantrtgslSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCF 361
Cdd:cd03215 95 VAENIALSSLL---------------------------------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKA 141
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2462583501 362 QVVSLMKGLAQGGRSIICTihqpSAKLFELF---DQLYVLSQGQ 402
Cdd:cd03215 142 EIYRLIRELADAGKAVLLI----SSELDELLglcDRILVMYEGR 181
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
212-402 |
1.94e-12 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 70.24 E-value: 1.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 212 ISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGLPRDLR----CFRKVSCYIMQD---DMLLPHLTVQE 284
Cdd:TIGR02633 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRnpaqAIRAGIAMVPEDrkrHGIVPILGVGK 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 285 AMMVSA---HLKLQEKDEGRREmvKEILTALGLLSCANTR----TGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:TIGR02633 359 NITLSVlksFCFKMRIDAAAEL--QIIGSAIQRLKVKTASpflpIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDV 436
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2462583501 358 ASCFQVVSLMKGLAQGGRSIIcTIHQPSAKLFELFDQLYVLSQGQ 402
Cdd:TIGR02633 437 GAKYEIYKLINQLAQEGVAII-VVSSELAEVLGLSDRVLVIGEGK 480
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
218-382 |
2.25e-12 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 67.78 E-value: 2.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 218 SGELVAIMGPSGAGKSTLMNILAG--------------YRE--TGMKGAVLINGLPR----DLRCFRKVscyimQDDMLL 277
Cdd:cd03236 25 EGQVLGLVGPNGIGKSTALKILAGklkpnlgkfddppdWDEilDEFRGSELQNYFTKllegDVKVIVKP-----QYVDLI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 PhltvqEAMMVSAHLKLQEKDEgrREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:cd03236 100 P-----KAVKGKVGELLKKKDE--RGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI 172
|
170 180
....*....|....*....|....*
gi 2462583501 358 ASCFQVVSLMKGLAQGGRSIICTIH 382
Cdd:cd03236 173 KQRLNAARLIRELAEDDNYVLVVEH 197
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
209-382 |
3.13e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 68.19 E-value: 3.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTL---MNIL----AGYRE-----------TGMKGAVLIN---GLPR--------D 259
Cdd:PRK13651 23 LDNVSVEINQGEFIAIIGQTGSGKTTFiehLNALllpdTGTIEwifkdeknkkkTKEKEKVLEKlviQKTRfkkikkikE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 260 LRcfRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRrEMVKEILTALGL-LSCANTRTGSLSGGQRKRLAIALE 338
Cdd:PRK13651 103 IR--RRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAK-KRAAKYIELVGLdESYLQRSPFELSGGQKRRVALAGI 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2462583501 339 LVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIH 382
Cdd:PRK13651 180 LAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
209-407 |
3.19e-12 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 67.51 E-value: 3.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLINGLPRDLRCFRKVSC---YIMQD--DMLLPHLTVQ 283
Cdd:PRK15112 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT-SGELLIDDHPLHFGDYSYRSQrirMIFQDpsTSLNPRQRIS 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 284 EAMMVSAHLKLQEKDEGRREMVKEILTALGLL-SCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQ 362
Cdd:PRK15112 108 QILDFPLRLNTDLEPEQREKQIIETLRQVGLLpDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQ 187
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2462583501 363 VVSLMKGL--AQGGRSIICTIHQPSAKlfELFDQLYVLSQGQCVYRG 407
Cdd:PRK15112 188 LINLMLELqeKQGISYIYVTQHLGMMK--HISDQVLVMHQGEVVERG 232
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
209-407 |
4.83e-12 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 69.46 E-value: 4.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGmkGAVLINGlpRDLR-----CFRKVSCYIMQDDMLL----- 277
Cdd:COG5265 374 LKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRfYDVTS--GRILIDG--QDIRdvtqaSLRAAIGIVPQDTVLFndtia 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 -------PHLT---VQEAMMvSAHL-----KLQEKDE---GRRemvkeiltalGLlscantrtgSLSGGQRKRLAIALEL 339
Cdd:COG5265 450 yniaygrPDASeeeVEAAAR-AAQIhdfieSLPDGYDtrvGER----------GL---------KLSGGEKQRVAIARTL 509
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462583501 340 VNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIIctI-HQPS----AklfelfDQLYVLSQGQCVYRG 407
Cdd:COG5265 510 LKNPPILIFDEATSALDSRTERAIQAALREVARGRTTLV--IaHRLStivdA------DEILVLEAGRIVERG 574
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
204-372 |
5.41e-12 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 66.72 E-value: 5.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTL------MNILAgyRETGMKGAVLING----LPR-DLRCFRKVSCYIMQ 272
Cdd:PRK14239 16 NKKKALNSVSLDFYPNEITALIGPSGSGKSTLlrsinrMNDLN--PEVTITGSIVYNGhniySPRtDTVDLRKEIGMVFQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 273 DDMLLPhLTVQEAMMVSAHLKLQEKDEGRREMVKEILTALGLLSCANTRTG----SLSGGQRKRLAIALELVNNPPVMFF 348
Cdd:PRK14239 94 QPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHdsalGLSGGQQQRVCIARVLATSPKIILL 172
|
170 180
....*....|....*....|....
gi 2462583501 349 DEPTSGLDSASCFQVVSLMKGLAQ 372
Cdd:PRK14239 173 DEPTSALDPISAGKIEETLLGLKD 196
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
205-402 |
5.54e-12 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 69.07 E-value: 5.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 205 YKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLingLPRDLRCfrkvscyimqddMLLPhltvQE 284
Cdd:COG4178 375 GRPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYG-SGRIA---RPAGARV------------LFLP----QR 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 285 AMMVSAHLKLQ-----EKDEGRREMVKEILTALGLLSCAN--------TRTgsLSGGQRKRLAIALELVNNPPVMFFDEP 351
Cdd:COG4178 435 PYLPLGTLREAllypaTAEAFSDAELREALEAVGLGHLAErldeeadwDQV--LSLGEQQRLAFARLLLHKPDWLFLDEA 512
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2462583501 352 TSGLDSASCFQVVSLMKGLAQGGrSIICTIHQPSakLFELFDQLYVLSQGQ 402
Cdd:COG4178 513 TSALDEENEAALYQLLREELPGT-TVISVGHRST--LAAFHDRVLELTGDG 560
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
188-382 |
5.54e-12 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 67.81 E-value: 5.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 188 AGRAYGWGFPgdpmeegyKTL--LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRE-TGMK----GAVLINGLPRDL 260
Cdd:PRK15079 22 DGKQWFWQPP--------KTLkaVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKaTDGEvawlGKDLLGMKDDEW 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 261 RCFRKVSCYIMQDDM--LLPHLTVQEAM---MVSAHLKLQeKDEgRREMVKEILTALGLL-SCANTRTGSLSGGQRKRLA 334
Cdd:PRK15079 94 RAVRSDIQMIFQDPLasLNPRMTIGEIIaepLRTYHPKLS-RQE-VKDRVKAMMLKVGLLpNLINRYPHEFSGGQCQRIG 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2462583501 335 IALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGL-AQGGRSIICTIH 382
Cdd:PRK15079 172 IARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLqREMGLSLIFIAH 220
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
206-424 |
5.84e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 67.13 E-value: 5.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGY--RETGMKGAVLINGLPR------DLRcfRKVSCYIMQDDMLL 277
Cdd:PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLllPDDNPNSKITVDGITLtaktvwDIR--EKVGIVFQNPDNQF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 PHLTVQEAMMvsahLKLQEKDEGRREMVK---EILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSG 354
Cdd:PRK13640 98 VGATVGDDVA----FGLENRAVPRPEMIKivrDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462583501 355 LDSASCFQVVSLMKGLA-QGGRSIICTIHQPSAKlfELFDQLYVLSQGQCVYRG---KVCNLVPYLRDLGLNCP 424
Cdd:PRK13640 174 LDPAGKEQILKLIRKLKkKNNLTVISITHDIDEA--NMADQVLVLDDGKLLAQGspvEIFSKVEMLKEIGLDIP 245
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
218-378 |
6.08e-12 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 69.04 E-value: 6.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 218 SGELVAIMGPSGAGKSTLMNILAG---------------------YRETGMKG--AVLINGlprDLRCFRKVScYImqdD 274
Cdd:COG1245 98 KGKVTGILGPNGIGKSTALKILSGelkpnlgdydeepswdevlkrFRGTELQDyfKKLANG---EIKVAHKPQ-YV---D 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 275 MLLPHL--TVQEammvsahlkLQEK-DEgrREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEP 351
Cdd:COG1245 171 LIPKVFkgTVRE---------LLEKvDE--RGKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEP 239
|
170 180
....*....|....*....|....*..
gi 2462583501 352 TSGLDSASCFQVVSLMKGLAQGGRSII 378
Cdd:COG1245 240 SSYLDIYQRLNVARLIRELAEEGKYVL 266
|
|
| YadH |
COG0842 |
ABC-type multidrug transport system, permease component [Defense mechanisms]; |
570-784 |
6.10e-12 |
|
ABC-type multidrug transport system, permease component [Defense mechanisms];
Pssm-ID: 440604 [Multi-domain] Cd Length: 200 Bit Score: 65.22 E-value: 6.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 570 MLFLMFAALMPTVLTF--PLEMGVFlrEHLNYW-YSLKAYYLAKTMADVPFQIMFPVAYCSIVYWMTSQPSDAVRFVLFA 646
Cdd:COG0842 11 AMSLLFTALMLTALSIarEREQGTL--ERLLVTpVSRLEILLGKVLAYLLRGLLQALLVLLVALLFFGVPLRGLSLLLLL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 647 ALGTMTSLVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYISYVRYGFEGVILSIYGldr 726
Cdd:COG0842 89 LVLLLFALAFSGLGLLISTLARSQEQASAISNLVILPLTFLSGAFFPIESLPGWLQAIAYLNPLTYFVEALRALFLG--- 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462583501 727 edlhcdidetchfqkseailrelDVENAKLYLDFIVLGIFFISLRLIAYFVLRYKIRA 784
Cdd:COG0842 166 -----------------------GAGLADVWPSLLVLLAFAVVLLALALRLFRRRLRG 200
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
209-408 |
8.33e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 66.69 E-value: 8.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYReTGMKGAVLINGLP-------RDLRCFRKVSCYIMQ--DDMLLPH 279
Cdd:PRK13649 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH-VPTQGSVRVDDTLitstsknKDIKQIRKKVGLVFQfpESQLFEE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQEAMMVSAHLKLQEKDEGRreMVKEILTALGLLSCANTRTG-SLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSA 358
Cdd:PRK13649 102 TVLKDVAFGPQNFGVSQEEAEA--LAREKLALVGISESLFEKNPfELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2462583501 359 SCFQVVSLMKGLAQGGRSIICTIHQPSaKLFELFDQLYVLSQGQCVYRGK 408
Cdd:PRK13649 180 GRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLSGK 228
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
209-424 |
1.09e-11 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 66.19 E-value: 1.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLINGLPR------DLRcfRKVSCYIMQDDMLLPHLT 281
Cdd:PRK13635 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGlLLPE--AGTITVGGMVLseetvwDVR--RQVGMVFQNPDNQFVGAT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 282 VQEAMMVSahlkLQEKDEGRREMVKEILTAL---GLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSA 358
Cdd:PRK13635 99 VQDDVAFG----LENIGVPREEMVERVDQALrqvGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462583501 359 SCFQVVSLMKGL-AQGGRSIICTIH--QPSAKLfelfDQLYVLSQGQCVYRG---KVCNLVPYLRDLGLNCP 424
Cdd:PRK13635 175 GRREVLETVRQLkEQKGITVLSITHdlDEAAQA----DRVIVMNKGEILEEGtpeEIFKSGHMLQEIGLDVP 242
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
204-360 |
1.41e-11 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 62.85 E-value: 1.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGyRETGMKGAVLingLPRDLRcfrkvSCYIMQddmllphltvq 283
Cdd:cd03221 11 GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG-ELEPDEGIVT---WGSTVK-----IGYFEQ----------- 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462583501 284 eammvsahlklqekdegrremvkeiltalgllscantrtgsLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASC 360
Cdd:cd03221 71 -----------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESI 106
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
202-409 |
1.50e-11 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 67.79 E-value: 1.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 202 EEGYKTLLKGISGKFNSGELVAIMGPSGAGKS-TLMNI--LAGYRETGMKGAVLINGL------PRDLRCFR--KVSCyI 270
Cdd:COG4172 19 GGGTVEAVKGVSFDIAAGETLALVGESGSGKSvTALSIlrLLPDPAAHPSGSILFDGQdllglsERELRRIRgnRIAM-I 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 271 MQDDM--LLPHLTV--QEAMMVSAHLKLQEKDegRREMVKEILTALGLLScANTRTGS----LSGGQRKRLAIALELVNN 342
Cdd:COG4172 98 FQEPMtsLNPLHTIgkQIAEVLRLHRGLSGAA--ARARALELLERVGIPD-PERRLDAyphqLSGGQRQRVMIAMALANE 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 343 PPVMFFDEPTSGLD---SAscfQVVSLMKGL-AQGGRSIictihqpsakLF---------ELFDQLYVLSQGQCVYRGKV 409
Cdd:COG4172 175 PDLLIADEPTTALDvtvQA---QILDLLKDLqRELGMAL----------LLithdlgvvrRFADRVAVMRQGEIVEQGPT 241
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
206-356 |
1.65e-11 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 64.59 E-value: 1.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGMKGAVLINGLPRDlrcfrkvscyimqddmllphltvQE 284
Cdd:COG2401 43 RYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGaLKGTPVAGCVDVPDNQFG-----------------------RE 99
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462583501 285 AMMVSAHLKLQEKDEgrremVKEILTALGLLSCANTRT--GSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:COG2401 100 ASLIDAIGRKGDFKD-----AVELLNAVGLSDAVLWLRrfKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLD 168
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
209-372 |
2.26e-11 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 65.76 E-value: 2.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAgYRETGMKGAVLINGLP---------RDLRcfRKVScYIMQDDM--LL 277
Cdd:PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLT-MIETPTGGELYYQGQDllkadpeaqKLLR--QKIQ-IVFQNPYgsLN 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 PHLTV----QEAMMVSAHLKLQEkdegRREMVKEILTALGLLSCANTRTGSL-SGGQRKRLAIALELVNNPPVMFFDEPT 352
Cdd:PRK11308 107 PRKKVgqilEEPLLINTSLSAAE----RREKALAMMAKVGLRPEHYDRYPHMfSGGQRQRIAIARALMLDPDVVVADEPV 182
|
170 180
....*....|....*....|
gi 2462583501 353 SGLDSASCFQVVSLMKGLAQ 372
Cdd:PRK11308 183 SALDVSVQAQVLNLMMDLQQ 202
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
209-378 |
3.91e-11 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 66.18 E-value: 3.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGY--REtgmKGAVLINGLPRDLRC----FRKVSCYIMQD---DMLLPH 279
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAlpRT---SGYVTLDGHEVVTRSpqdgLANGIVYISEDrkrDGLVLG 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQEAMMVSAhLKLQEKDEGRREMVKEILTALGLLSCANTRT-------GSLSGGQRKRLAIALELVNNPPVMFFDEPT 352
Cdd:PRK10762 345 MSVKENMSLTA-LRYFSRAGGSLKHADEQQAVSDFIRLFNIKTpsmeqaiGLLSGGNQQKVAIARGLMTRPKVLILDEPT 423
|
170 180
....*....|....*....|....*.
gi 2462583501 353 SGLDSASCFQVVSLMKGLAQGGRSII 378
Cdd:PRK10762 424 RGVDVGAKKEIYQLINQFKAEGLSII 449
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
208-383 |
4.39e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 63.05 E-value: 4.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 208 LLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLING--LPRDLRCFRKVSCYIMQDDMLLPHLTVQE 284
Cdd:PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGlLNPE--KGEILFERqsIKKDLCTYQKQLCFVGHRSGINPYLTLRE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 285 AMMVSAHLKlqekdEGRREmVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVV 364
Cdd:PRK13540 94 NCLYDIHFS-----PGAVG-ITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTII 167
|
170
....*....|....*....
gi 2462583501 365 SLMKGLAQGGRSIICTIHQ 383
Cdd:PRK13540 168 TKIQEHRAKGGAVLLTSHQ 186
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
204-356 |
4.78e-11 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 64.02 E-value: 4.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLING-----LPRD-LRCFRKVSCYIMQDDMLL 277
Cdd:PRK11831 18 GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD-HGEILFDGenipaMSRSrLYTVRKRMSMLFQSGALF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 PHLTVQE--AMMVSAHLKLQEKDEGRREMVKeiLTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGL 355
Cdd:PRK11831 97 TDMNVFDnvAYPLREHTQLPAPLLHSTVMMK--LEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQ 174
|
.
gi 2462583501 356 D 356
Cdd:PRK11831 175 D 175
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
206-409 |
5.20e-11 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 63.89 E-value: 5.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRE-TGMKGAVLING-----LPRDLRCFRKVsCYIMQDDMLLPH 279
Cdd:CHL00131 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAyKILEGDILFKGesildLEPEERAHLGI-FLAFQYPIEIPG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQEAMMVS--AHLKLQEKDEGRR----EMVKEILTALGL----LScANTRTGsLSGGQRKRLAIALELVNNPPVMFFD 349
Cdd:CHL00131 99 VSNADFLRLAynSKRKFQGLPELDPleflEIINEKLKLVGMdpsfLS-RNVNEG-FSGGEKKRNEILQMALLDSELAILD 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462583501 350 EPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPsaKLFELF--DQLYVLSQGQCVYRGKV 409
Cdd:CHL00131 177 ETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ--RLLDYIkpDYVHVMQNGKIIKTGDA 236
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
219-407 |
5.50e-11 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 63.79 E-value: 5.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 219 GELVAIMGPSGAGKSTLMNILAGyRETGMKGAVLinglprdlrcfrkvscYIMQDDMLLPHLTVQEA------------- 285
Cdd:PRK11701 32 GEVLGIVGESGSGKTTLLNALSA-RLAPDAGEVH----------------YRMRDGQLRDLYALSEAerrrllrtewgfv 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 286 ---------MMVSAhlklqekdeGRRemVKEILTALGLLSCANTRT--------------------GSLSGGQRKRLAIA 336
Cdd:PRK11701 95 hqhprdglrMQVSA---------GGN--IGERLMAVGARHYGDIRAtagdwlerveidaariddlpTTFSGGMQQRLQIA 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462583501 337 LELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGL-AQGGRSIICTIHQPS-AKLfeLFDQLYVLSQGQCVYRG 407
Cdd:PRK11701 164 RNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLvRELGLAVVIVTHDLAvARL--LAHRLLVMKQGRVVESG 234
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
219-451 |
6.26e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 63.98 E-value: 6.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 219 GELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGL-------PRDLRCFRKVSCYIMQ--DDMLLPHLTVQEAMMVS 289
Cdd:PRK13643 32 GSYTALIGHTGSGKSTLLQHLNGLLQP-TEGKVTVGDIvvsstskQKEIKPVRKKVGVVFQfpESQLFEETVLKDVAFGP 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 290 AHLKLQeKDEGRReMVKEILTALGLLSCANTRTG-SLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMK 368
Cdd:PRK13643 111 QNFGIP-KEKAEK-IAAEKLEMVGLADEFWEKSPfELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFE 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 369 GLAQGGRSIICTIHQPSaKLFELFDQLYVLSQGQCVYRGKVCNL---VPYLRDLGLNCPTYHNPADFVMEvaSGEYGDQN 445
Cdd:PRK13643 189 SIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGTPSDVfqeVDFLKAHELGVPKATHFADQLQK--TGAVTFEK 265
|
....*.
gi 2462583501 446 SRLVRA 451
Cdd:PRK13643 266 LPITRA 271
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
219-382 |
7.00e-11 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 66.19 E-value: 7.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 219 GELVAIMGPSGAGKSTLMNILAGyRETGMKGAVLING--LPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQE 296
Cdd:TIGR01257 1965 GECFGLLGVNGAGKTTTFKMLTG-DTTVTSGDATVAGksILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVP 2043
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 297 KDEGRReMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRS 376
Cdd:TIGR01257 2044 AEEIEK-VANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRA 2122
|
....*.
gi 2462583501 377 IICTIH 382
Cdd:TIGR01257 2123 VVLTSH 2128
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
217-356 |
7.37e-11 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 62.56 E-value: 7.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 217 NSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLINGLPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLklqe 296
Cdd:PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLLHVE-SGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGL---- 109
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462583501 297 kdEGRR--EMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:PRK13543 110 --HGRRakQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
202-424 |
8.49e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 63.57 E-value: 8.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 202 EEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTL---MNILAgyreTGMKGAVLINGL----PRDLRCFRKVSCYIMQ-- 272
Cdd:PRK13633 19 ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIakhMNALL----IPSEGKVYVDGLdtsdEENLWDIRNKAGMVFQnp 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 273 DDMLLPHLTVQEAMMVSAHLKLQEKDegRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPT 352
Cdd:PRK13633 95 DNQIVATIVEEDVAFGPENLGIPPEE--IRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPT 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462583501 353 SGLDSASCFQVVSLMKGL-AQGGRSIICTIH--QPSAKLfelfDQLYVLSQGQCVYRG---KVCNLVPYLRDLGLNCP 424
Cdd:PRK13633 173 AMLDPSGRREVVNTIKELnKKYGITIILITHymEEAVEA----DRIIVMDSGKVVMEGtpkEIFKEVEMMKKIGLDVP 246
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
209-409 |
1.03e-10 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 62.79 E-value: 1.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLINGlprdlrcfrKVSCyimqddmLL-------PHL 280
Cdd:COG1134 42 LKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGiLEPT--SGRVEVNG---------RVSA-------LLelgagfhPEL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 281 TVQE-AMMVSAHLKLQEKDEgrREMVKEIL--TALGllSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:COG1134 104 TGREnIYLNGRLLGLSRKEI--DEKFDEIVefAELG--DFIDQPVKTYSSGMRARLAFAVATAVDPDILLVDEVLAVGDA 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2462583501 358 AscFQ--VVSLMKGLAQGGRSIICTIHQPSAkLFELFDQLYVLSQGQCVYRGKV 409
Cdd:COG1134 180 A--FQkkCLARIRELRESGRTVIFVSHSMGA-VRRLCDRAIWLEKGRLVMDGDP 230
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
217-382 |
1.06e-10 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 63.98 E-value: 1.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 217 NSGELVAIMGPSGAGKS----TLMNILAGYRETGmkGAVLING-----LP-RDLRCFR--KVScYIMQDDM--LLPHLTV 282
Cdd:PRK09473 40 RAGETLGIVGESGSGKSqtafALMGLLAANGRIG--GSATFNGreilnLPeKELNKLRaeQIS-MIFQDPMtsLNPYMRV 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 283 QEAMMVSAHL-KLQEKDEGRREMVKeILTALGLLScANTRTG----SLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:PRK09473 117 GEQLMEVLMLhKGMSKAEAFEESVR-MLDAVKMPE-ARKRMKmyphEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDV 194
|
170 180
....*....|....*....|....*.
gi 2462583501 358 ASCFQVVSLMKGLAQG-GRSIICTIH 382
Cdd:PRK09473 195 TVQAQIMTLLNELKREfNTAIIMITH 220
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
198-424 |
1.34e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 62.87 E-value: 1.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 198 GDPMEegyKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLP-------RDLRCFRKVSCYI 270
Cdd:PRK13646 15 GTPYE---HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP-TTGTVTVDDITithktkdKYIRPVRKRIGMV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 271 MQ--DDMLLPHLTVQEAMMVSAHLKL---QEKDEGRRemvkeILTALGLlsCANTRTGS---LSGGQRKRLAIALELVNN 342
Cdd:PRK13646 91 FQfpESQLFEDTVEREIIFGPKNFKMnldEVKNYAHR-----LLMDLGF--SRDVMSQSpfqMSGGQMRKIAIVSILAMN 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 343 PPVMFFDEPTSGLDSASCFQVVSLMKGLA-QGGRSIICTIHQPSaKLFELFDQLYVLSQGQCVYRGKVCNLV---PYLRD 418
Cdd:PRK13646 164 PDIIVLDEPTAGLDPQSKRQVMRLLKSLQtDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKELFkdkKKLAD 242
|
....*.
gi 2462583501 419 LGLNCP 424
Cdd:PRK13646 243 WHIGLP 248
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
218-388 |
1.88e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 59.69 E-value: 1.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 218 SGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGlprdlrcfrkvscyimqddmllphltvqeammvsahlklqek 297
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG------------------------------------------ 38
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 298 degrrEMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSAS------CFQVVSLMKGLA 371
Cdd:smart00382 39 -----EDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQeallllLEELRLLLLLKS 113
|
170
....*....|....*..
gi 2462583501 372 QGGRSIICTIHQPSAKL 388
Cdd:smart00382 114 EKNLTVILTTNDEKDLG 130
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
287-412 |
2.48e-10 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 62.83 E-value: 2.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 287 MVSAHLKLQEKDEgrREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSL 366
Cdd:NF000106 109 MIGR*LDLSRKDA--RARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDE 186
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2462583501 367 MKGLAQGGRSIICTIhQPSAKLFELFDQLYVLSQGQCVYRGKVCNL 412
Cdd:NF000106 187 VRSMVRDGATVLLTT-QYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
209-359 |
2.59e-10 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 60.89 E-value: 2.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLmnILAGYRET-GMKGAVLINGLP------RDLRcfRKVSCyIMQDDMLLphlt 281
Cdd:cd03369 24 LKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLeAEEGKIEIDGIDistiplEDLR--SSLTI-IPQDPTLF---- 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462583501 282 vqeamMVSAHLKLQEKDEGRREmvkEILTALGLLSCANtrtgSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSAS 359
Cdd:cd03369 95 -----SGTIRSNLDPFDEYSDE---EIYGALRVSEGGL----NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT 160
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
208-409 |
2.88e-10 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 61.64 E-value: 2.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 208 LLKGISGKFNSGELVAIMGPSGAGKS----TLMNIL-AGYRETGmkGAVLING---LPRDLRCfRKVSCyIMQDdmllPH 279
Cdd:PRK10418 18 LVHGVSLTLQRGRVLALVGGSGSGKSltcaAALGILpAGVRQTA--GRVLLDGkpvAPCALRG-RKIAT-IMQN----PR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQEAMMVSAHLK---LQEKDEGRREMVKEILTALGLlscANTRT------GSLSGGQRKRLAIALELVNNPPVMFFDE 350
Cdd:PRK10418 90 SAFNPLHTMHTHARetcLALGKPADDATLTAALEAVGL---ENAARvlklypFEMSGGMLQRMMIALALLCEAPFIIADE 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 351 PTSGLDSASCFQVVSLMKGLAQG-GRSIICTIHQPSAkLFELFDQLYVLSQGQCVYRGKV 409
Cdd:PRK10418 167 PTTDLDVVAQARILDLLESIVQKrALGMLLVTHDMGV-VARLADDVAVMSHGRIVEQGDV 225
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
209-356 |
3.83e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 61.65 E-value: 3.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLPR------DLRcfRKVSCYIMQDDMLLPHLTV 282
Cdd:PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE-FEGKVKIDGELLtaenvwNLR--RKIGMVFQNPDNQFVGATV 99
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462583501 283 QEAMMvsahLKLQEKDEGRREMVK---EILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:PRK13642 100 EDDVA----FGMENQGIPREEMIKrvdEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLD 172
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
219-373 |
4.39e-10 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 62.90 E-value: 4.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 219 GELVAIMGPSGAGKSTLMNILAG--------YRETGMKGAV---------------LINGlprDLRCFRKVScYImqdDm 275
Cdd:PRK13409 99 GKVTGILGPNGIGKTTAVKILSGelipnlgdYEEEPSWDEVlkrfrgtelqnyfkkLYNG---EIKVVHKPQ-YV---D- 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 276 LLPHL---TVQEAmmvsahlkLQEKDEgrREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPT 352
Cdd:PRK13409 171 LIPKVfkgKVREL--------LKKVDE--RGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPT 240
|
170 180
....*....|....*....|.
gi 2462583501 353 SGLDSASCFQVVSLMKGLAQG 373
Cdd:PRK13409 241 SYLDIRQRLNVARLIRELAEG 261
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
209-404 |
4.72e-10 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 62.73 E-value: 4.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGmkGAVLINGLPRDLR----------CF----RKvscyimqD 273
Cdd:COG1129 268 VRDVSFSVRAGEILGIAGLVGAGRTELARALFGaDPADS--GEIRLDGKPVRIRsprdairagiAYvpedRK-------G 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 274 DMLLPHLTVQEAMMVSAHLK------LQEKDEgrREMVKEILTALGL-LSCANTRTGSLSGG-QRKrLAIALELVNNPPV 345
Cdd:COG1129 339 EGLVLDLSIRENITLASLDRlsrgglLDRRRE--RALAEEYIKRLRIkTPSPEQPVGNLSGGnQQK-VVLAKWLATDPKV 415
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462583501 346 MFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTihqpSAKLFELF---DQLYVLSQGQCV 404
Cdd:COG1129 416 LILDEPTRGIDVGAKAEIYRLIRELAAEGKAVIVI----SSELPELLglsDRILVMREGRIV 473
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
206-359 |
5.11e-10 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 62.65 E-value: 5.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYrETGMKG-AVLINGLprdlrcfrKVScYIMQDDMLLPHLTVQE 284
Cdd:TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-DKDFNGeARPQPGI--------KVG-YLPQEPQLDPTKTVRE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 285 AMM--VSAHLKLQEK---------------DEGRREMVK--EILTALGL-------------LSCA--NTRTGSLSGGQR 330
Cdd:TIGR03719 88 NVEegVAEIKDALDRfneisakyaepdadfDKLAAEQAElqEIIDAADAwdldsqleiamdaLRCPpwDADVTKLSGGER 167
|
170 180
....*....|....*....|....*....
gi 2462583501 331 KRLAIALELVNNPPVMFFDEPTSGLDSAS 359
Cdd:TIGR03719 168 RRVALCRLLLSKPDMLLLDEPTNHLDAES 196
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
219-402 |
5.35e-10 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 62.64 E-value: 5.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 219 GELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGLPRDLR-CFRKVS---CYIMQD---DMLLPHLTVQEAMMVSAH 291
Cdd:PRK13549 288 GEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRnPQQAIAqgiAMVPEDrkrDGIVPVMGVGKNITLAAL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 292 LKL---------QEKDEGRREMVK-EILTALGLLscantRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCF 361
Cdd:PRK13549 368 DRFtggsriddaAELKTILESIQRlKVKTASPEL-----AIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKY 442
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2462583501 362 QVVSLMKGLAQGGRSIICTihqpSAKLFE---LFDQLYVLSQGQ 402
Cdd:PRK13549 443 EIYKLINQLVQQGVAIIVI----SSELPEvlgLSDRVLVMHEGK 482
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
219-356 |
5.87e-10 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 62.66 E-value: 5.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 219 GELVAIMGPSGAGKSTLMNILAGyrETGM-KGAVLINglpRDLRCFR-----------KVSCYIM-----QDDML----- 276
Cdd:PRK11147 29 NERVCLVGRNGAGKSTLMKILNG--EVLLdDGRIIYE---QDLIVARlqqdpprnvegTVYDFVAegieeQAEYLkryhd 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 277 LPHLTVQEAM--MVSAHLKLQEK-D-------EGRremVKEILTALGLlsCANTRTGSLSGGQRKRLAIALELVNNPPVM 346
Cdd:PRK11147 104 ISHLVETDPSekNLNELAKLQEQlDhhnlwqlENR---INEVLAQLGL--DPDAALSSLSGGWLRKAALGRALVSNPDVL 178
|
170
....*....|
gi 2462583501 347 FFDEPTSGLD 356
Cdd:PRK11147 179 LLDEPTNHLD 188
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
219-412 |
7.06e-10 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 62.33 E-value: 7.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 219 GELVAIMGPSGAGKSTLMNILAG-Y-RETG----MKGAVLINGlPRDlrcfrkvS-----CYIMQDDMLLPHLTVQEAMM 287
Cdd:PRK10762 30 GRVMALVGENGAGKSTMMKVLTGiYtRDAGsilyLGKEVTFNG-PKS-------SqeagiGIIHQELNLIPQLTIAENIF 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 288 VsahlklqekdeGR-----------REMVKE---ILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTS 353
Cdd:PRK10762 102 L-----------GRefvnrfgridwKKMYAEadkLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTD 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462583501 354 GL---DSASCFQVVSLMKglAQGgrsiiCTIHQPSAKLFELF---DQLYVLSQGQCVYRGKVCNL 412
Cdd:PRK10762 171 ALtdtETESLFRVIRELK--SQG-----RGIVYISHRLKEIFeicDDVTVFRDGQFIAEREVADL 228
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
223-356 |
8.17e-10 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 61.43 E-value: 8.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 223 AIMGPSGAGKSTLMNILAGYrETGMKGAVLING-----------LPRDLRcfrKVScYIMQDDMLLPHLTVQeammvsAH 291
Cdd:PRK11144 28 AIFGRSGAGKTSLINAISGL-TRPQKGRIVLNGrvlfdaekgicLPPEKR---RIG-YVFQDARLFPHYKVR------GN 96
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462583501 292 LK--LQEKDegrREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:PRK11144 97 LRygMAKSM---VAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
219-367 |
9.35e-10 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 62.18 E-value: 9.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 219 GELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGL------PRDLRCFRKVSCYIMQDDM--LLPHLTVQEAMM--V 288
Cdd:PRK10261 350 GETLSLVGESGSGKSTTGRALLRLVES-QGGEIIFNGQridtlsPGKLQALRRDIQFIFQDPYasLDPRQTVGDSIMepL 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 289 SAHLKLQEKDEGRRemVKEILTALGLLSCANTR-TGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLM 367
Cdd:PRK10261 429 RVHGLLPGKAAAAR--VAWLLERVGLLPEHAWRyPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLL 506
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
206-431 |
1.06e-09 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 60.05 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAgyRETGMKGAVLINGLPR-----------DLRCFRKVSCYIMQDD 274
Cdd:PRK14258 20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLN--RMNELESEVRVEGRVEffnqniyerrvNLNRLRRQVSMVHPKP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 275 MLLPhLTVQEAM-----MVSAHLKLQEKDegrreMVKEILTALGLLSCANTRTGS----LSGGQRKRLAIALELVNNPPV 345
Cdd:PRK14258 98 NLFP-MSVYDNVaygvkIVGWRPKLEIDD-----IVESALKDADLWDEIKHKIHKsaldLSGGQQQRLCIARALAVKPKV 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 346 MFFDEPTSGLDSASCFQVVSLMKGLA-QGGRSIICTIHQpsaklfelFDQLYVLSQGQCVYRGKVcNLVPYLRDLGLNCP 424
Cdd:PRK14258 172 LLMDEPCFGLDPIASMKVESLIQSLRlRSELTMVIVSHN--------LHQVSRLSDFTAFFKGNE-NRIGQLVEFGLTKK 242
|
....*..
gi 2462583501 425 TYHNPAD 431
Cdd:PRK14258 243 IFNSPHD 249
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
206-419 |
1.22e-09 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 61.64 E-value: 1.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKS----TLMNILAGYRETGMKGAVLING---LPRDLRCFRKVS----CYIMQDD 274
Cdd:PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSvtalSILRLLPSPPVVYPSGDIRFHGeslLHASEQTLRGVRgnkiAMIFQEP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 275 ML----LPHLTVQEAMMVSAHLKLqekdegRREMVK-EILTAL---GLLSCANTRTG---SLSGGQRKRLAIALELVNNP 343
Cdd:PRK15134 102 MVslnpLHTLEKQLYEVLSLHRGM------RREAARgEILNCLdrvGIRQAAKRLTDyphQLSGGERQRVMIAMALLTRP 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 344 PVMFFDEPTSGLDSASCFQVVSLMKGLAQG-GRSIICTIHQPSAkLFELFDQLYVLSQGQCVYRGKVCNLV-----PYLR 417
Cdd:PRK15134 176 ELLIADEPTTALDVSVQAQILQLLRELQQElNMGLLFITHNLSI-VRKLADRVAVMQNGRCVEQNRAATLFsapthPYTQ 254
|
..
gi 2462583501 418 DL 419
Cdd:PRK15134 255 KL 256
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
197-356 |
1.53e-09 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 60.03 E-value: 1.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 197 PGDPMEegyKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGY-RETgmKGAVLI-------NGLPRDLRCFRKVSC 268
Cdd:PRK13634 14 YKTPFE---RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLlQPT--SGTVTIgervitaGKKNKKLKPLRKKVG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 269 YIMQddmlLP-HLTVQEAMmvsahlklqEKD------------EGRREMVKEILTALGLLSCANTRTG-SLSGGQRKRLA 334
Cdd:PRK13634 89 IVFQ----FPeHQLFEETV---------EKDicfgpmnfgvseEDAKQKAREMIELVGLPEELLARSPfELSGGQMRRVA 155
|
170 180
....*....|....*....|..
gi 2462583501 335 IALELVNNPPVMFFDEPTSGLD 356
Cdd:PRK13634 156 IAGVLAMEPEVLVLDEPTAGLD 177
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
201-407 |
1.60e-09 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 60.97 E-value: 1.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 201 MEEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGLPRDLRC-------FRKVSC----- 268
Cdd:TIGR03269 8 KKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCgyverpsKVGEPCpvcgg 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 269 --------YIMQDDMLLPHLTVQEAMMVSAHLKLQEKD-----------EGRREMVKEILTALGLLSCANTR------TG 323
Cdd:TIGR03269 88 tlepeevdFWNLSDKLRRRIRKRIAIMLQRTFALYGDDtvldnvlealeEIGYEGKEAVGRAVDLIEMVQLShrithiAR 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 324 SLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVS-LMKGLAQGGRSIICTIHQPSAkLFELFDQLYVLSQGQ 402
Cdd:TIGR03269 168 DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNaLEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLENGE 246
|
....*
gi 2462583501 403 CVYRG 407
Cdd:TIGR03269 247 IKEEG 251
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
209-419 |
2.33e-09 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 60.64 E-value: 2.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKS----TLMNILAGYRETGMKGAVLINGLPRDLRCFRKVSCYIMQD----DM----- 275
Cdd:PRK10261 32 VRNLSFSLQRGETLAIVGESGSGKSvtalALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHvrgaDMamifq 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 276 -----LLPHLTVQEAMMVSAHLklqEKDEGRREMVKEILTALGLLSCANTRT------GSLSGGQRKRLAIALELVNNPP 344
Cdd:PRK10261 112 epmtsLNPVFTVGEQIAESIRL---HQGASREEAMVEAKRMLDQVRIPEAQTilsrypHQLSGGMRQRVMIAMALSCRPA 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 345 VMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVCNLV-----PYLRDL 419
Cdd:PRK10261 189 VLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFhapqhPYTRAL 268
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
209-409 |
2.98e-09 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 56.95 E-value: 2.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNilagyretgmkgavlinglprdlRCFRKVSCYIMQDDmlLPHLTVQEAMMV 288
Cdd:cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN-----------------------EGLYASGKARLISF--LPKFSRNKLIFI 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 289 SahlKLQEkdegrreMVKeilTALGLLScANTRTGSLSGGQRKRLAIALEL-VNNPPVMF-FDEPTSGLDSASCFQVVSL 366
Cdd:cd03238 66 D---QLQF-------LID---VGLGYLT-LGQKLSTLSGGELQRVKLASELfSEPPGTLFiLDEPSTGLHQQDINQLLEV 131
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2462583501 367 MKGLAQGGRSIICTIHQPsaKLFELFDQLYVLSQGQCVYRGKV 409
Cdd:cd03238 132 IKGLIDLGNTVILIEHNL--DVLSSADWIIDFGPGSGKSGGKV 172
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
212-408 |
4.15e-09 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 58.98 E-value: 4.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 212 ISGKFNSGELVAIMGPSGAGKStlMNILAGYRETGMKGAVLINGLPRDLRCFRKVS------------CYIMQDDM--LL 277
Cdd:PRK11022 26 ISYSVKQGEVVGIVGESGSGKS--VSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISekerrnlvgaevAMIFQDPMtsLN 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 PHLTVQEAMMVSahLKLQE--KDEGRREMVKEILTALGL---LSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPT 352
Cdd:PRK11022 104 PCYTVGFQIMEA--IKVHQggNKKTRRQRAIDLLNQVGIpdpASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPT 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462583501 353 SGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRGK 408
Cdd:PRK11022 182 TALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGK 237
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
214-357 |
4.15e-09 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 57.80 E-value: 4.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 214 GKFNSGELVAIMGPSGAGKSTLMNILAGyretGMKGAVLINGLPRDlrcfrKVScYIMQddmllpHLTVQEAMMVSAHLK 293
Cdd:cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAG----VLKPDEGDIEIELD-----TVS-YKPQ------YIKADYEGTVRDLLS 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462583501 294 LQEKDEGRREMVK-EILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:cd03237 84 SITKDFYTHPYFKtEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
206-407 |
4.64e-09 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 57.88 E-value: 4.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG---YRETGmkGAVLINGlpRDLRCF----RKVSCYIM--QDDML 276
Cdd:PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGredYEVTG--GTVEFKG--KDLLELspedRAGEGIFMafQYPVE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 277 LP----HLTVQEAmmVSAHLKLQEKDEGRR----EMVKEILTALGLLSCANTRTGSL--SGGQRKRLAIALELVNNPPVM 346
Cdd:PRK09580 90 IPgvsnQFFLQTA--LNAVRSYRGQEPLDRfdfqDLMEEKIALLKMPEDLLTRSVNVgfSGGEKKRNDILQMAVLEPELC 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462583501 347 FFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRG 407
Cdd:PRK09580 168 ILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
186-359 |
6.30e-09 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 59.36 E-value: 6.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 186 HGAGRAYGWGfpgdpmeegyKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGyRETGMKG-AVLINGLprdlrcfr 264
Cdd:PRK11819 10 NRVSKVVPPK----------KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG-VDKEFEGeARPAPGI-------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 265 KVScYIMQDDMLLPHLTVQEAMM--VSAHLKLQEK---------------DEGRREMVK--EILTALGL----------- 314
Cdd:PRK11819 71 KVG-YLPQEPQLDPEKTVRENVEegVAEVKAALDRfneiyaayaepdadfDALAAEQGElqEIIDAADAwdldsqleiam 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2462583501 315 --LSC--ANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSAS 359
Cdd:PRK11819 150 daLRCppWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES 198
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
209-402 |
8.46e-09 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 58.88 E-value: 8.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLINGL------PRDLRCfRKVScYIMQDDM---LLPH 279
Cdd:COG3845 274 LKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPA-SGSIRLDGEditglsPRERRR-LGVA-YIPEDRLgrgLVPD 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQEAMMVSAH----------LKLQEKDEGRREMVKE--ILTAlGllscANTRTGSLSGGQRKRLAIALELVNNPPVMF 347
Cdd:COG3845 351 MSVAENLILGRYrrppfsrggfLDRKAIRAFAEELIEEfdVRTP-G----PDTPARSLSGGNQQKVILARELSRDPKLLI 425
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462583501 348 FDEPTSGLDSASCFQVVSLMKGLAQGGRSIICtIhqpSAKLFELF---DQLYVLSQGQ 402
Cdd:COG3845 426 AAQPTRGLDVGAIEFIHQRLLELRDAGAAVLL-I---SEDLDEILalsDRIAVMYEGR 479
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
216-396 |
1.29e-08 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 54.67 E-value: 1.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 216 FNSGELVAIMGPSGAGKSTLMN--ILAgyreTGMKGAVLINGLPRDLRCFrkvSCYimqddmllphltvqeammVSAHLk 293
Cdd:cd03227 18 FGEGSLTIITGPNGSGKSTILDaiGLA----LGGAQSATRRRSGVKAGCI---VAA------------------VSAEL- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 294 lqekdegrremvkeILTALGLlscantrtgslSGGQRKRLAIALEL----VNNPPVMFFDEPTSGLDSASCFQVVSLMKG 369
Cdd:cd03227 72 --------------IFTRLQL-----------SGGEKELSALALILalasLKPRPLYILDEIDRGLDPRDGQALAEAILE 126
|
170 180
....*....|....*....|....*..
gi 2462583501 370 LAQGGRSIICTIHQPsaKLFELFDQLY 396
Cdd:cd03227 127 HLVKGAQVIVITHLP--ELAELADKLI 151
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
211-382 |
1.65e-08 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 57.89 E-value: 1.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 211 GISGKFNSGELVAIMGPSGAGKSTLMNILAGYRE-TGMKGAVLI-------NGLPRDLRcfRKVSCYI---MQDDMLLPH 279
Cdd:TIGR03269 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEpTSGEVNVRVgdewvdmTKPGPDGR--GRAKRYIgilHQEYDLYPH 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 LTVQEAMMVSAHLKLqEKDEGRREMVKeILTALGL-----LSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSG 354
Cdd:TIGR03269 380 RTVLDNLTEAIGLEL-PDELARMKAVI-TLKMVGFdeekaEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGT 457
|
170 180
....*....|....*....|....*....
gi 2462583501 355 LDSASCFQVV-SLMKGLAQGGRSIICTIH 382
Cdd:TIGR03269 458 MDPITKVDVThSILKAREEMEQTFIIVSH 486
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
204-356 |
2.04e-08 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 57.64 E-value: 2.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGyRETGMKGAVLINGLPrdlrcfrKVSCYIMQDDMLLPHLTVQ 283
Cdd:TIGR03719 333 GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG-QEQPDSGTIEIGETV-------KLAYVDQSRDALDPNKTVW 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 284 EAmmVSA---HLKLqekdeGRREMvkeilTALGLLSCAN-------TRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTS 353
Cdd:TIGR03719 405 EE--ISGgldIIKL-----GKREI-----PSRAYVGRFNfkgsdqqKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTN 472
|
...
gi 2462583501 354 GLD 356
Cdd:TIGR03719 473 DLD 475
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
216-350 |
2.12e-08 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 57.50 E-value: 2.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 216 FNSGELVAIMGPSGAGKSTLMNILAG-YRETGmkGAVLINGLP---RDLRCFRKVSCYIMQDDMLLPHLtvqeammvsah 291
Cdd:COG4615 355 IRRGELVFIVGGNGSGKSTLAKLLTGlYRPES--GEILLDGQPvtaDNREAYRQLFSAVFSDFHLFDRL----------- 421
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462583501 292 lkLQEKDEGRREMVKEILTALGL---LSCANTR--TGSLSGGQRKRLAIALELVNNPPVMFFDE 350
Cdd:COG4615 422 --LGLDGEADPARARELLERLELdhkVSVEDGRfsTTDLSQGQRKRLALLVALLEDRPILVFDE 483
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
219-356 |
2.59e-08 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 57.44 E-value: 2.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 219 GELVAIMGPSGAGKSTLMNILagyreTGM----KGAVLINGLP---RDLRCFRKVScYIMQDDMLLPHLTVQEAMMVSAH 291
Cdd:NF033858 292 GEIFGFLGSNGCGKSTTMKML-----TGLlpasEGEAWLFGQPvdaGDIATRRRVG-YMSQAFSLYGELTVRQNLELHAR 365
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462583501 292 L-KLQEKDEGRRemVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:NF033858 366 LfHLPAAEIAAR--VAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVD 429
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
204-356 |
4.30e-08 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 54.72 E-value: 4.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLING-----LPRDLrcFRKVSCYIMQDDMLLP 278
Cdd:PRK10247 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP-TSGTLLFEGedistLKPEI--YRQQVSYCAQTPTLFG 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462583501 279 HlTVQEAMMVSAHLKLQEKDEGRreMVKEiLTALGL-LSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:PRK10247 95 D-TVYDNLIFPWQIRNQQPDPAI--FLDD-LERFALpDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
213-357 |
4.37e-08 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 56.72 E-value: 4.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 213 SGKFNSGELVAIMGPSGAGKSTLMNILAGyRETGMKGAVlinglPRDLrcfrKVSC---YIMQD-DMllphlTVQEAMMV 288
Cdd:COG1245 360 GGEIREGEVLGIVGPNGIGKTTFAKILAG-VLKPDEGEV-----DEDL----KISYkpqYISPDyDG-----TVEEFLRS 424
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 289 SAHLKLQEKdegrreMVK-EILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDS 357
Cdd:COG1245 425 ANTDDFGSS------YYKtEIIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDV 488
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
206-408 |
4.42e-08 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 56.65 E-value: 4.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLPRDL---RCFRKVSCYIMQDDMLLphltv 282
Cdd:PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL-TEGEIRLDGRPLSSlshSVLRQGVAMVQQDPVVL----- 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 283 qeAMMVSAHLKLqekdeGR---REMVKEILTALGLLSCA-------NTRTG----SLSGGQRKRLAIALELVNNPPVMFF 348
Cdd:PRK10790 428 --ADTFLANVTL-----GRdisEEQVWQALETVQLAELArslpdglYTPLGeqgnNLSVGQKQLLALARVLVQTPQILIL 500
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 349 DEPTSGLDSAScFQVVSLMKGLAQGGRSIICTIHQPSAkLFELfDQLYVLSQGQCVYRGK 408
Cdd:PRK10790 501 DEATANIDSGT-EQAIQQALAAVREHTTLVVIAHRLST-IVEA-DTILVLHRGQAVEQGT 557
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
194-402 |
7.23e-08 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 56.02 E-value: 7.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 194 WGFPGDPmeegykTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG---------YRETGMKGAVL----INGLprDL 260
Cdd:PLN03073 516 FGYPGGP------LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGelqpssgtvFRSAKVRMAVFsqhhVDGL--DL 587
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 261 ---------RCFRKVScyimqDDMLLPHLTvqeAMMVSAHLKLQEkdegrreMVkeiltalgllscantrtgSLSGGQRK 331
Cdd:PLN03073 588 ssnpllymmRCFPGVP-----EQKLRAHLG---SFGVTGNLALQP-------MY------------------TLSGGQKS 634
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462583501 332 RLAIALELVNNPPVMFFDEPTSGLDSAScfqVVSLMKGLA--QGGrsiICTIHQPSAKLFELFDQLYVLSQGQ 402
Cdd:PLN03073 635 RVAFAKITFKKPHILLLDEPSNHLDLDA---VEALIQGLVlfQGG---VLMVSHDEHLISGSVDELWVVSEGK 701
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
209-383 |
7.61e-08 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 53.87 E-value: 7.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLPRDLRCF-------RKVSCYIMQDDMLLpHLT 281
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT-LEGKVHWSNKNESEPSFeatrsrnRYSVAYAAQKPWLL-NAT 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 282 VQEAMMVSAHLKLQekdegRREMVKEI--------LTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTS 353
Cdd:cd03290 95 VEENITFGSPFNKQ-----RYKAVTDAcslqpdidLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFS 169
|
170 180 190
....*....|....*....|....*....|...
gi 2462583501 354 GLD---SASCFQvVSLMKGLAQGGRSIICTIHQ 383
Cdd:cd03290 170 ALDihlSDHLMQ-EGILKFLQDDKRTLVLVTHK 201
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
320-402 |
8.01e-08 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 55.51 E-value: 8.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 320 TRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIIcTIHQPSAKLFELFDQLYVLS 399
Cdd:PRK10982 387 TQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGII-IISSEMPELLGITDRILVMS 465
|
...
gi 2462583501 400 QGQ 402
Cdd:PRK10982 466 NGL 468
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
219-404 |
9.42e-08 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 55.57 E-value: 9.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 219 GELVAIMGPSGAGKSTLMNILAGYRETG-MKGAVLINGlprDLRCFRKVS-------CYIMQDDMLLPHLTVQEAMMVS- 289
Cdd:NF040905 27 GEIHALCGENGAGKSTLMKVLSGVYPHGsYEGEILFDG---EVCRFKDIRdsealgiVIIHQELALIPYLSIAENIFLGn 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 290 --AHLKLQEKDEGRREmVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGL---DSAscfQVV 364
Cdd:NF040905 104 erAKRGVIDWNETNRR-ARELLAKVGLDESPDTLVTDIGVGKQQLVEIAKALSKDVKLLILDEPTAALneeDSA---ALL 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2462583501 365 SLMKGL-AQGGRSIIctIhqpSAKLFELF---DQLYVLSQGQCV 404
Cdd:NF040905 180 DLLLELkAQGITSII--I---SHKLNEIRrvaDSITVLRDGRTI 218
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
219-350 |
1.22e-07 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 54.98 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 219 GELVAIMGPSGAGKSTLMNILAG-YRETgmKGAVLINGLP---RDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVS----- 289
Cdd:PRK10522 349 GELLFLIGGNGSGKSTLAMLLTGlYQPQ--SGEILLDGKPvtaEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANpalve 426
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462583501 290 ---AHLKLQEK---DEGRremvkeiltalgllsCANTRtgsLSGGQRKRLAIALELVNNPPVMFFDE 350
Cdd:PRK10522 427 kwlERLKMAHKlelEDGR---------------ISNLK---LSKGQKKRLALLLALAEERDILLLDE 475
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
204-356 |
1.31e-07 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 53.58 E-value: 1.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGY---------RETGMKgavlINGLPRDLRCfrkvscyimqdD 274
Cdd:PRK09544 15 GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLvapdegvikRNGKLR----IGYVPQKLYL-----------D 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 275 MLLPhLTVQEAMMVSAHLKlqekdegrremVKEILTALGLLSCA---NTRTGSLSGGQRKRLAIALELVNNPPVMFFDEP 351
Cdd:PRK09544 80 TTLP-LTVNRFLRLRPGTK-----------KEDILPALKRVQAGhliDAPMQKLSGGETQRVLLARALLNRPQLLVLDEP 147
|
....*
gi 2462583501 352 TSGLD 356
Cdd:PRK09544 148 TQGVD 152
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
206-407 |
2.02e-07 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 54.33 E-value: 2.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLINGLP-RDLRC--FRKVSCYIMQDDMLL----- 277
Cdd:PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS-EGDIRFHDIPlTKLQLdsWRSRLAVVSQTPFLFsdtva 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 -------PHLTVQE----AMMVSAHLKLQEKDEGRREMVKEiltalgllscantRTGSLSGGQRKRLAIALELVNNPPVM 346
Cdd:PRK10789 407 nnialgrPDATQQEiehvARLASVHDDILRLPQGYDTEVGE-------------RGVMLSGGQKQRISIARALLLNAEIL 473
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462583501 347 FFDEPTSGLDSASCFQVvslMKGLAQGG--RSIICTIHQPSAkLFELfDQLYVLSQGQCVYRG 407
Cdd:PRK10789 474 ILDDALSAVDGRTEHQI---LHNLRQWGegRTVIISAHRLSA-LTEA-SEILVMQHGHIAQRG 531
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
206-399 |
2.21e-07 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 51.39 E-value: 2.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVlinGLPRDlrcfrkvscyimQDDMLLPhltvQEA 285
Cdd:cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRI---GMPEG------------EDLLFLP----QRP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 286 MMVSAHLKLQekdegrremvkeILTALGLLscantrtgsLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVS 365
Cdd:cd03223 74 YLPLGTLREQ------------LIYPWDDV---------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132
|
170 180 190
....*....|....*....|....*....|....
gi 2462583501 366 LMKGLaqgGRSIICTIHQPSakLFELFDQLYVLS 399
Cdd:cd03223 133 LLKEL---GITVISVGHRPS--LWKFHDRVLDLD 161
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
209-380 |
2.38e-07 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 52.86 E-value: 2.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLM-------NILAGYRetgMKGAVLINGL--------PRDLRcfRKVScYIMQD 273
Cdd:PRK14243 26 VKNVWLDIPKNQITAFIGPSGCGKSTILrcfnrlnDLIPGFR---VEGKVTFHGKnlyapdvdPVEVR--RRIG-MVFQK 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 274 DMLLPHlTVQEAMMVSAHL--------KLQEK--------DEgrremVKEILTALGLlscantrtgSLSGGQRKRLAIAL 337
Cdd:PRK14243 100 PNPFPK-SIYDNIAYGARIngykgdmdELVERslrqaalwDE-----VKDKLKQSGL---------SLSGGQQQRLCIAR 164
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2462583501 338 ELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICT 380
Cdd:PRK14243 165 AIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVT 207
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
195-401 |
3.20e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 54.21 E-value: 3.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 195 GFPGDPMEEGY--------KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGlprdlrcfrkV 266
Cdd:PLN03232 611 GAPAISIKNGYfswdsktsKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRG----------S 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 267 SCYIMQDDMLLpHLTVQEAMMVSAhlKLQEKDEGRREMVKEILTALGLLSCAN-----TRTGSLSGGQRKRLAIALELVN 341
Cdd:PLN03232 681 VAYVPQVSWIF-NATVRENILFGS--DFESERYWRAIDVTALQHDLDLLPGRDlteigERGVNISGGQKQRVSMARAVYS 757
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462583501 342 NPPVMFFDEPTSGLDSASCFQVV-SLMKGLAQGGRSIICT--IHqpsakLFELFDQLYVLSQG 401
Cdd:PLN03232 758 NSDIYIFDDPLSALDAHVAHQVFdSCMKDELKGKTRVLVTnqLH-----FLPLMDRIILVSEG 815
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
196-402 |
3.28e-07 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 52.43 E-value: 3.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 196 FPGDPMEEGYKtlLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLING--LPR----DLRcfRKVSCY 269
Cdd:PRK13650 12 FKYKEDQEKYT--LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE-SGQIIIDGdlLTEenvwDIR--HKIGMV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 270 IMQDDMLLPHLTVQEAMMVSahlkLQEKDEGRREM---VKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVM 346
Cdd:PRK13650 87 FQNPDNQFVGATVEDDVAFG----LENKGIPHEEMkerVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKII 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462583501 347 FFDEPTSGLDSASCFQVVSLMKGLAQG-GRSIICTIHQpsakLFE--LFDQLYVLSQGQ 402
Cdd:PRK13650 163 ILDEATSMLDPEGRLELIKTIKGIRDDyQMTVISITHD----LDEvaLSDRVLVMKNGQ 217
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
209-404 |
4.91e-07 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 53.25 E-value: 4.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTL-MNILAGYRETGMKGAVLINGLPRDLRCF--------------RKVSCYIMQD 273
Cdd:NF040905 276 VDDVSLNVRRGEIVGIAGLMGAGRTELaMSVFGRSYGRNISGTVFKDGKEVDVSTVsdaidaglayvtedRKGYGLNLID 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 274 DML----LPHL-TVQEAMMVSAHLKLQEKDEGRREMvkEILTalgllSCANTRTGSLSGGQRKRLAIALELVNNPPVMFF 348
Cdd:NF040905 356 DIKrnitLANLgKVSRRGVIDENEEIKVAEEYRKKM--NIKT-----PSVFQKVGNLSGGNQQKVVLSKWLFTDPDVLIL 428
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462583501 349 DEPTSGLDSASCFQVVSLMKGLAQGGRSIIcTIhqpSAKLFELF---DQLYVLSQGQCV 404
Cdd:NF040905 429 DEPTRGIDVGAKYEIYTIINELAAEGKGVI-VI---SSELPELLgmcDRIYVMNEGRIT 483
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
213-356 |
6.39e-07 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 52.89 E-value: 6.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 213 SGKFNSGELVAIMGPSGAGKSTLMNILAGyRETGMKGAVLInglprDLrcfrKVSC---YIMQDdmllPHLTVQEAMMvs 289
Cdd:PRK13409 359 GGEIYEGEVIGIVGPNGIGKTTFAKLLAG-VLKPDEGEVDP-----EL----KISYkpqYIKPD----YDGTVEDLLR-- 422
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462583501 290 ahlklQEKDEGRREMVK-EILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:PRK13409 423 -----SITDDLGSSYYKsEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
209-407 |
7.63e-07 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 51.55 E-value: 7.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGY--RETGmKGAVLINGLPRDLRCFRKVS--------CYIMQDDMLLP 278
Cdd:PRK13645 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLiiSETG-QTIVGDYAIPANLKKIKEVKrlrkeiglVFQFPEYQLFQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 279 HLTVQEAMMVSAHLklqekDEGRREMVKEILTALGLLSC----ANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSG 354
Cdd:PRK13645 106 ETIEKDIAFGPVNL-----GENKQEAYKKVPELLKLVQLpedyVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2462583501 355 LDSASCFQVVSLMKGLAQG-GRSIICTIHQPSaKLFELFDQLYVLSQGQCVYRG 407
Cdd:PRK13645 181 LDPKGEEDFINLFERLNKEyKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIG 233
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
561-707 |
2.45e-06 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 50.47 E-value: 2.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 561 SNSGFLFFSMLFLMFAALMPTVLTFPLEMgVFLRE----HLNYWYSLK--AYYLAKTMADVPFQIMFPVAYCSIVYWMTS 634
Cdd:pfam12698 155 PQSGYAYYLVGLILMIIILIGAAIIAVSI-VEEKEsrikERLLVSGVSplQYWLGKILGDFLVGLLQLLIILLLLFGIGI 233
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462583501 635 QPSDAVRFVLFAALGtmtSLVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYI 707
Cdd:pfam12698 234 PFGNLGLLLLLFLLY---GLAYIALGYLLGSLFKNSEDAQSIIGIVILLLSGFFGGLFPLEDPPSFLQWIFSI 303
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
208-359 |
2.68e-06 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 51.18 E-value: 2.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 208 LLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGY------------------------------RETGMK--------- 248
Cdd:PTZ00265 1183 IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFydlkndhhivfknehtndmtneqdyqgdeeQNVGMKnvnefsltk 1262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 249 --------------GAVLINGL---PRDLRCFRKVSCYIMQDDMLLphltvqeAMMVSAHLKLQeKDEGRREMVKEI--L 309
Cdd:PTZ00265 1263 eggsgedstvfknsGKILLDGVdicDYNLKDLRNLFSIVSQEPMLF-------NMSIYENIKFG-KEDATREDVKRAckF 1334
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462583501 310 TAL-----GLLSCANTRTG----SLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSAS 359
Cdd:PTZ00265 1335 AAIdefieSLPNKYDTNVGpygkSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
206-356 |
2.72e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 50.78 E-value: 2.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGLPR-------DLRcfRK---VSCYImqddm 275
Cdd:PRK10938 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRgsgetiwDIK--KHigyVSSSL----- 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 276 llpHLTVQeammVSAHLK-------------LQEKDEGRREMVKEILTALGLLSC-ANTRTGSLSGGQRKRLAIALELVN 341
Cdd:PRK10938 346 ---HLDYR----VSTSVRnvilsgffdsigiYQAVSDRQQKLAQQWLDILGIDKRtADAPFHSLSWGQQRLALIVRALVK 418
|
170
....*....|....*
gi 2462583501 342 NPPVMFFDEPTSGLD 356
Cdd:PRK10938 419 HPTLLILDEPLQGLD 433
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
214-405 |
3.45e-06 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 47.95 E-value: 3.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 214 GKFNSGELVAIMGPSGAGKSTLMNILAGYREtgmkgavlinglPRDlrcfrkvscyimqDDMLLPHLTVQeammvsahLK 293
Cdd:cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI------------PNG-------------DNDEWDGITPV--------YK 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 294 LQEKDegrremvkeiltalgllscantrtgsLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQG 373
Cdd:cd03222 67 PQYID--------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEE 120
|
170 180 190
....*....|....*....|....*....|..
gi 2462583501 374 GRSIICTIHQPSAKLFELFDQLYVLSQGQCVY 405
Cdd:cd03222 121 GKKTALVVEHDLAVLDYLSDRIHVFEGEPGVY 152
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
202-413 |
1.60e-05 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 47.21 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 202 EEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMniLAGYRETGM-KGAVLING-----LPrdLRCFRKVSCYIMQDDM 275
Cdd:cd03288 30 ENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLS--LAFFRMVDIfDGKIVIDGidiskLP--LHTLRSRLSIILQDPI 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 276 LL---------PHLTVQEAMMVSAHLKLQEKDegrreMVKEIltaLGLLSCANTRTG-SLSGGQRKRLAIALELVNNPPV 345
Cdd:cd03288 106 LFsgsirfnldPECKCTDDRLWEALEIAQLKN-----MVKSL---PGGLDAVVTEGGeNFSVGQRQLFCLARAFVRKSSI 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 346 MFFDEPTSGLDSAS--CFQVVsLMKGLAQggRSIICTIHQPSAKLFElfDQLYVLSQGQCVYRGKVCNLV 413
Cdd:cd03288 178 LIMDEATASIDMATenILQKV-VMTAFAD--RTVVTIAHRVSTILDA--DLVLVLSRGILVECDTPENLL 242
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
206-385 |
2.16e-05 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 47.13 E-value: 2.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-------YRETGMKGAVLINGLP------RDLRCFRKVscyimq 272
Cdd:PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGdltgggaPRGARVTGDVTLNGEPlaaidaPRLARLRAV------ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 273 ddmlLPHlTVQEAMMVSAH--LKLQEKDEGRREMVKEILTAlGLLSCANTRTG----------SLSGGQRKRLAIALELV 340
Cdd:PRK13547 88 ----LPQ-AAQPAFAFSAReiVLLGRYPHARRAGALTHRDG-EIAWQALALAGatalvgrdvtTLSGGELARVQFARVLA 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2462583501 341 N---------NPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGR-SIICTIHQPS 385
Cdd:PRK13547 162 QlwpphdaaqPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNlGVLAIVHDPN 216
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
203-402 |
2.31e-05 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 47.74 E-value: 2.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 203 EGYKTllkgISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLING------------------LPRDlrcfR 264
Cdd:PRK15439 277 EGFRN----ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA-RGGRIMLNGkeinalstaqrlarglvyLPED----R 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 265 KVS------------CYIMQDDMLLPHLTVQEAMMVsahlklqekDEGRRemvkeiltALGL-LSCANTRTGSLSGGQRK 331
Cdd:PRK15439 348 QSSglyldaplawnvCALTHNRRGFWIKPARENAVL---------ERYRR--------ALNIkFNHAEQAARTLSGGNQQ 410
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462583501 332 RLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTihqpSAKLFE---LFDQLYVLSQGQ 402
Cdd:PRK15439 411 KVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFI----SSDLEEieqMADRVLVMHQGE 480
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
212-402 |
3.50e-05 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 47.21 E-value: 3.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 212 ISGKFNSGELVAIMGPSGAGKSTLMNILAGY-RETGmkGAVLINGLPRDLRCFRK-VSCYIM------QDDMLLPHLTVQ 283
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGAtRRTA--GQVYLDGKPIDIRSPRDaIRAGIMlcpedrKAEGIIPVHSVA 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 284 EAMMVSA---HLK----LQEKDEgrREMVKEILTALgllscaNTRT-------GSLSGGQRKRLAIALELVNNPPVMFFD 349
Cdd:PRK11288 350 DNINISArrhHLRagclINNRWE--AENADRFIRSL------NIKTpsreqliMNLSGGNQQKAILGRWLSEDMKVILLD 421
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462583501 350 EPTSGLDSASCFQVVSLMKGLAQGGRSIICTihqpSAKLFE---LFDQLYVLSQGQ 402
Cdd:PRK11288 422 EPTRGIDVGAKHEIYNVIYELAAQGVAVLFV----SSDLPEvlgVADRIVVMREGR 473
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
206-359 |
5.72e-05 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 46.42 E-value: 5.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGyRETGMKGAV------LINGLPRDlrcfrkvSCYIMQDDMllph 279
Cdd:PRK15064 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG-ELEPDSGTVkwsenaNIGYYAQD-------HAYDFENDL---- 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 280 lTVQEAMMvsahlklQEKDEGRRE-MVKEILTALgLLSC--ANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:PRK15064 400 -TLFDWMS-------QWRQEGDDEqAVRGTLGRL-LFSQddIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470
|
...
gi 2462583501 357 SAS 359
Cdd:PRK15064 471 MES 473
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
215-382 |
9.97e-05 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 44.14 E-value: 9.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 215 KFNSGeLVAIMGPSGAGKSTLMNIL--AGYRETGMKGavliNGLPRDLRCFRKVScyimqddmllphltvqeammVSAHL 292
Cdd:cd03240 19 EFFSP-LTLIVGQNGAGKTTIIEALkyALTGELPPNS----KGGAHDPKLIREGE--------------------VRAQV 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 293 KLQEKDEGRREMVkeILTALG-LLSCANTRTG-----------SLSGGQRK------RLAIALELVNNPPVMFFDEPTSG 354
Cdd:cd03240 74 KLAFENANGKKYT--ITRSLAiLENVIFCHQGesnwplldmrgRCSGGEKVlasliiRLALAETFGSNCGILALDEPTTN 151
|
170 180 190
....*....|....*....|....*....|
gi 2462583501 355 LDSASC-FQVVSLMKG-LAQGGRSIICTIH 382
Cdd:cd03240 152 LDEENIeESLAEIIEErKSQKNFQLIVITH 181
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
325-399 |
1.15e-04 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 45.79 E-value: 1.15e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462583501 325 LSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLaQGGRSIICTIHQPSAKLFELFDQLYVLS 399
Cdd:PTZ00265 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNL-KGNENRITIIIAHRLSTIRYANTIFVLS 653
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
204-402 |
2.34e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 44.97 E-value: 2.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 204 GYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILagYRETGM-KGAVLINGLprDLRCF-----RKVSCYIMQDDMLL 277
Cdd:PLN03232 1247 GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNAL--FRIVELeKGRIMIDDC--DVAKFgltdlRRVLSIIPQSPVLF 1322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 PHLTVQEAMMVSAHLKLQEKDEGRREMVKEIL--TALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGL 355
Cdd:PLN03232 1323 SGTVRFNIDPFSEHNDADLWEALERAHIKDVIdrNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASV 1402
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2462583501 356 DsascFQVVSLM-KGLAQGGRSiiCTIHQPSAKLFELF--DQLYVLSQGQ 402
Cdd:PLN03232 1403 D----VRTDSLIqRTIREEFKS--CTMLVIAHRLNTIIdcDKILVLSSGQ 1446
|
|
| PhnN |
COG3709 |
Ribose 1,5-bisphosphate kinase PhnN [Carbohydrate transport and metabolism]; |
218-240 |
3.81e-04 |
|
Ribose 1,5-bisphosphate kinase PhnN [Carbohydrate transport and metabolism];
Pssm-ID: 442923 Cd Length: 188 Bit Score: 42.10 E-value: 3.81e-04
|
| YjeQ_EngC |
cd01854 |
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; ... |
202-246 |
4.41e-04 |
|
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain.
Pssm-ID: 206747 [Multi-domain] Cd Length: 211 Bit Score: 42.39 E-value: 4.41e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 2462583501 202 EEGYKTLLKGISGKfnsgeLVAIMGPSGAGKSTLMNILAG--YRETG 246
Cdd:cd01854 73 GEGLDELRELLKGK-----TSVLVGQSGVGKSTLLNALLPelVLATG 114
|
|
| ABC2_membrane_7 |
pfam19055 |
ABC-2 type transporter; |
382-439 |
5.62e-04 |
|
ABC-2 type transporter;
Pssm-ID: 465963 [Multi-domain] Cd Length: 409 Bit Score: 42.97 E-value: 5.62e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462583501 382 HQPSAKLFELFDQLYVLSQ-GQCVYRGKVCNLVPYLRDLGLNCPTYHNPADFVMEVASG 439
Cdd:pfam19055 1 HQPSYTLFKMFDDLILLAKgGLTVYHGPVKKVEEYFAGLGINVPERVNPPDHFIDILEG 59
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
201-356 |
6.64e-04 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 42.96 E-value: 6.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 201 MEEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRE-TGmkGAVLINGLPR--DLRC-------FRKVSCYI 270
Cdd:PRK15064 9 MQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEpSA--GNVSLDPNERlgKLRQdqfafeeFTVLDTVI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 271 MQDDML------------LPHLTVQEAMMVsAHLKLQ--EKD----EGRremVKEILTALGL-LSCANTRTGSLSGGQRK 331
Cdd:PRK15064 87 MGHTELwevkqerdriyaLPEMSEEDGMKV-ADLEVKfaEMDgytaEAR---AGELLLGVGIpEEQHYGLMSEVAPGWKL 162
|
170 180
....*....|....*....|....*
gi 2462583501 332 RLAIALELVNNPPVMFFDEPTSGLD 356
Cdd:PRK15064 163 RVLLAQALFSNPDILLLDEPTNNLD 187
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
205-385 |
7.03e-04 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 42.96 E-value: 7.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 205 YKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGmKGAVLINGlprdlrcfrkVSCYIMQDDMLLPHLTVQE 284
Cdd:PRK13545 36 YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN-KGTVDIKG----------SAALIAISSGLNGQLTGIE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 285 AMMVSAhLKLQEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVV 364
Cdd:PRK13545 105 NIELKG-LMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCL 183
|
170 180
....*....|....*....|.
gi 2462583501 365 SLMKGLAQGGRSIICTIHQPS 385
Cdd:PRK13545 184 DKMNEFKEQGKTIFFISHSLS 204
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
324-382 |
1.11e-03 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 42.89 E-value: 1.11e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462583501 324 SLSGGQRKRLAIALELVN---NPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIH 382
Cdd:PRK00635 809 SLSGGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870
|
|
| RsgA_GTPase |
pfam03193 |
RsgA GTPase; RsgA (also known as EngC and YjeQ) represents a protein family whose members are ... |
203-241 |
1.74e-03 |
|
RsgA GTPase; RsgA (also known as EngC and YjeQ) represents a protein family whose members are broadly conserved in bacteria and are indispensable for growth. The GTPase domain of RsgA is very similar to several P-loop GTPases, but differs in having a circular permutation of the GTPase structure described by a G4-G1-G3 pattern.
Pssm-ID: 427191 [Multi-domain] Cd Length: 174 Bit Score: 39.83 E-value: 1.74e-03
10 20 30
....*....|....*....|....*....|....*....
gi 2462583501 203 EGYKTLLKGISGKfnsgeLVAIMGPSGAGKSTLMNILAG 241
Cdd:pfam03193 95 EGIEALKELLKGK-----TTVLAGQSGVGKSTLLNALLP 128
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
209-239 |
2.49e-03 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 41.60 E-value: 2.49e-03
10 20 30
....*....|....*....|....*....|..
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMN-IL 239
Cdd:PRK00349 625 LKNVDVEIPLGKFTCVTGVSGSGKSTLINeTL 656
|
|
| PRK01889 |
PRK01889 |
GTPase RsgA; Reviewed |
219-241 |
2.59e-03 |
|
GTPase RsgA; Reviewed
Pssm-ID: 234988 [Multi-domain] Cd Length: 356 Bit Score: 40.69 E-value: 2.59e-03
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
325-404 |
2.66e-03 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 40.56 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 325 LSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQGQCV 404
Cdd:PRK15093 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTV 238
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
209-239 |
3.23e-03 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 41.17 E-value: 3.23e-03
10 20 30
....*....|....*....|....*....|..
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMN-IL 239
Cdd:COG0178 621 LKNVDVEIPLGVLTCVTGVSGSGKSTLVNdIL 652
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
203-358 |
5.57e-03 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 40.53 E-value: 5.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 203 EGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGlpRD-----LRCFRKVSCYIMQDDMLL 277
Cdd:PTZ00243 1320 EGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV-CGGEIRVNG--REigaygLRELRRQFSMIPQDPVLF 1396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 278 ---------PHLTVQEAmMVSAHLKLQekdeGRREMVKEilTALGLLSCANTRTGSLSGGQRKRLAIALELVN-NPPVMF 347
Cdd:PTZ00243 1397 dgtvrqnvdPFLEASSA-EVWAALELV----GLRERVAS--ESEGIDSRVLEGGSNYSVGQRQLMCMARALLKkGSGFIL 1469
|
170
....*....|.
gi 2462583501 348 FDEPTSGLDSA 358
Cdd:PTZ00243 1470 MDEATANIDPA 1480
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
209-356 |
6.05e-03 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 40.11 E-value: 6.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 209 LKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETgMKGAVLINGLprDLRCF-----RKVSCYIMQDDMLLPHlTVQ 283
Cdd:PLN03130 1255 LHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL-ERGRILIDGC--DISKFglmdlRKVLGIIPQAPVLFSG-TVR 1330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462583501 284 ---------------EAMMvSAHLklqeKDEGRRemvkeilTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFF 348
Cdd:PLN03130 1331 fnldpfnehndadlwESLE-RAHL----KDVIRR-------NSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVL 1398
|
....*...
gi 2462583501 349 DEPTSGLD 356
Cdd:PLN03130 1399 DEATAAVD 1406
|
|
| NK |
cd02019 |
Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of ... |
221-240 |
7.55e-03 |
|
Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Pssm-ID: 238977 [Multi-domain] Cd Length: 69 Bit Score: 35.78 E-value: 7.55e-03
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
324-382 |
9.56e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 39.61 E-value: 9.56e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462583501 324 SLSGGQRKRLAIALEL---VNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIH 382
Cdd:TIGR00630 829 TLSGGEAQRIKLAKELskrSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEH 890
|
|
| |
