|
Name |
Accession |
Description |
Interval |
E-value |
| DUF4485 |
pfam14846 |
Domain of unknown function (DUF4485); This family is found in eukaryotes, and is approximately ... |
13-98 |
3.12e-29 |
|
Domain of unknown function (DUF4485); This family is found in eukaryotes, and is approximately 90 amino acids in length.
Pssm-ID: 464345 Cd Length: 83 Bit Score: 111.21 E-value: 3.12e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 13 LDAEFDHFVVDMKPFVLKLPHRTERQRCALWIRKLCEPSGTgagIMGRKNRNLYAKLLLHMLKRGALEGPFTHRPEPGTL 92
Cdd:pfam14846 1 LDEEFLYFLLDIKPLLANLNDKEDKIRAAEWLKKLCEPTHN---LEEKKNRNDYLQLLLLMLQNGRLEGPFNKPPPPGPL 77
|
....*.
gi 2462553644 93 KILPSY 98
Cdd:pfam14846 78 PPLPEF 83
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
559-902 |
5.75e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 5.75e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 559 SELDKGKEDTQKKihkfeeaLKEKEEQLTRVTEVQR-LQAQ------QADAAL-------EEFKRQVELNSEKvYAEMKE 624
Cdd:COG1196 168 SKYKERKEEAERK-------LEATEENLERLEDILGeLERQleplerQAEKAEryrelkeELKELEAELLLLK-LRELEA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 625 QMEKVEADLTRSKSLREKQSKEflwqlediRQRYEQQIVELKLEHEQEKTHLLQQHNAEkdslvRDHEREIENLEKQLRA 704
Cdd:COG1196 240 ELEELEAELEELEAELEELEAE--------LAELEAELEELRLELEELELELEEAQAEE-----YELLAELARLEQDIAR 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 705 ANmEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIE 784
Cdd:COG1196 307 LE-ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 785 LKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRD 864
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
330 340 350
....*....|....*....|....*....|....*...
gi 2462553644 865 NDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQSR 902
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
421-740 |
8.18e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 8.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 421 LTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKyDADINLLKQEhalsA 500
Cdd:TIGR02168 661 ITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL-SRQISALRKD----L 735
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 501 SKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHlkhiyEKKAHDLQSELDKGKEDTQKKIHKFEEALK 580
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA-----EAEIEELEAQIEQLKEELKALREALDELRA 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 581 EKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKvyAEMKEQMEKVEADLTRSKSLREKQSKEfLWQLEDIRQRYEQ 660
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI--EELSEDIESLAAEIEELEELIEELESE-LEALLNERASLEE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 661 QIVELKL----------EHEQEKTHLLQQHNAEKDSLVRDHER------EIENLEKQLRA-ANMEHENQIQEFKKRDAQv 723
Cdd:TIGR02168 888 ALALLRSeleelseelrELESKRSELRRELEELREKLAQLELRleglevRIDNLQERLSEeYSLTLEEAEALENKIEDD- 966
|
330
....*....|....*..
gi 2462553644 724 IADMEAQVHKLREELIN 740
Cdd:TIGR02168 967 EEEARRRLKRLENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
273-825 |
8.15e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 8.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 273 KLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKIcEQSTESL 352
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL-ARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 353 NNDWEKKLHnavAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQR 432
Cdd:COG1196 305 ARLEERRRE---LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 433 QKLIQEKAELERcyqitcsELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEHALSASKASSMIEELEQ 512
Cdd:COG1196 382 EELAEELLEALR-------AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 513 NVCQLKQQLQESELQRK--------QQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHK--FEEALKEK 582
Cdd:COG1196 455 EEEEEALLELLAELLEEaalleaalAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGavAVLIGVEA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 583 EEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQI 662
Cdd:COG1196 535 AYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAR 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 663 VELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLE--KQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELIN 740
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLegEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 741 VNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQ 820
Cdd:COG1196 695 LEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLER 774
|
....*
gi 2462553644 821 IIAEL 825
Cdd:COG1196 775 EIEAL 779
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
255-878 |
8.25e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.77 E-value: 8.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 255 EKELDMKTKMMEAKFHEEKLKLQQKhdadvqkilERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETK 334
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKDAEEAKKAEE---------ERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD 1293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 335 EDQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEY-MAQTQSTNHMIKE 413
Cdd:PTZ00121 1294 EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAeAAEEKAEAAEKKK 1373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 414 LEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLhKEKDHLVNDYEQNMKLLQTKYDADINLLK 493
Cdd:PTZ00121 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA-KKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 494 QEHALSASKASSMIEElEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIH 573
Cdd:PTZ00121 1453 AEEAKKAEEAKKKAEE-AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE 1531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 574 KfeealKEKEEQLTRVTEVQRLqaqqadaalEEFKRQVELNSEKvyaEMKEQMEKVEADLTRSKSLREKqskeflwqlED 653
Cdd:PTZ00121 1532 E-----AKKADEAKKAEEKKKA---------DELKKAEELKKAE---EKKKAEEAKKAEEDKNMALRKA---------EE 1585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 654 IRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQlraaNMEHENQIQEFKKRDAQVIADMEAQVHK 733
Cdd:PTZ00121 1586 AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK----KVEQLKKKEAEEKKKAEELKKAEEENKI 1661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 734 LREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEK--EY 811
Cdd:PTZ00121 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKeaEE 1741
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462553644 812 TQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIR-DNDQAIKVLQDELEN 878
Cdd:PTZ00121 1742 DKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRmEVDKKIKDIFDNFAN 1809
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
253-813 |
1.11e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 59.36 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 253 IREKELDMKTKMMEAKFHEEKL----KLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQ 328
Cdd:pfam15921 108 LRQSVIDLQTKLQEMQMERDAMadirRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQ 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 329 VIRETKED-QIAELKKICEQSTES-----------------LNNDW----------EKKLHNAVAEMEQEKFDLQKQHTE 380
Cdd:pfam15921 188 EIRSILVDfEEASGKKIYEHDSMStmhfrslgsaiskilreLDTEIsylkgrifpvEDQLEALKSESQNKIELLLQQHQD 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 381 NIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEarVQQLTGEAENSNLQRQkliqeKAELERCYQITCSELQEVKarr 460
Cdd:pfam15921 268 RIEQLISEHEVEITGLTEKASSARSQANSIQSQLE--IIQEQARNQNSMYMRQ-----LSDLESTVSQLRSELREAK--- 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 461 nTLHKEKdhlVNDYEQNMKLLqtkyDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLR--DQENK 538
Cdd:pfam15921 338 -RMYEDK---IEELEKQLVLA----NSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwDRDTG 409
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 539 FQMEKSHLKHIYEKKAHDLQ---SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVqrlqAQQADAALEEFKRQV-ELN 614
Cdd:pfam15921 410 NSITIDHLRRELDDRNMEVQrleALLKAMKSECQGQMERQMAAIQGKNESLEKVSSL----TAQLESTKEMLRKVVeELT 485
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 615 SEKVYAemkEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELK--------LEHEQEKTHLLQQHNAEKDS 686
Cdd:pfam15921 486 AKKMTL---ESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQhlknegdhLRNVQTECEALKLQMAEKDK 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 687 LVRDHEREIENLEK------------QLRAANMEHE-----NQIQEFK----KRDAQvIADMEAQVHKLREE---LINVN 742
Cdd:pfam15921 563 VIEILRQQIENMTQlvgqhgrtagamQVEKAQLEKEindrrLELQEFKilkdKKDAK-IRELEARVSDLELEkvkLVNAG 641
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462553644 743 SQRKQQLVELgllrEEEKQRATREHEIVVNKLKAESEKMKIELK--KTHAAETEMTLEKANSKLKQIEKEYTQ 813
Cdd:pfam15921 642 SERLRAVKDI----KQERDQLLNEVKTSRNELNSLSEDYEVLKRnfRNKSEEMETTTNKLKMQLKSAQSELEQ 710
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
250-810 |
1.80e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 1.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 250 LSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQV 329
Cdd:COG1196 231 LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 330 IRETkEDQIAELKKICEQSTESLNNDWEKK--LHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQST 407
Cdd:COG1196 311 RREL-EERLEELEEELAELEEELEELEEELeeLEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 408 NHM--IKELEARVQQLTGEAENSNLQRQKLIQEKAELERcyqitcsELQEVKARRNTLHKEkdhlvndyEQNMKLLQTKY 485
Cdd:COG1196 390 EALraAAELAAQLEELEEAEEALLERLERLEEELEELEE-------ALAELEEEEEEEEEA--------LEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 486 DADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGK 565
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 566 EDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSK 645
Cdd:COG1196 535 AYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAR 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 646 EFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDsLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIA 725
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE-GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 726 DMEAQVHKLREELiNVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKthAAETEMTLEKANSKLK 805
Cdd:COG1196 694 ELEEALLAEEEEE-RELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALE--ELPEPPDLEELERELE 770
|
....*
gi 2462553644 806 QIEKE 810
Cdd:COG1196 771 RLERE 775
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
248-900 |
1.90e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 58.44 E-value: 1.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 248 HFLSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKIL-ERKNNEIEELKTLYRSKQHETEETIRKLEKKvqtlird 326
Cdd:pfam02463 187 ELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLyLDYLKLNEERIDLLQELLRDEQEEIESSKQE------- 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 327 cQVIRETKEDQIAELKKICEQSTESLNNDWEKK-LHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQ 405
Cdd:pfam02463 260 -IEKEEEKLAQVLKENKEEEKEKKLQEEELKLLaKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 406 STNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKy 485
Cdd:pfam02463 339 ELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQL- 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 486 dADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGK 565
Cdd:pfam02463 418 -EDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 566 EDTQK-----KIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEM-KEQMEKVEADLTRSKSL 639
Cdd:pfam02463 497 ERSQKeskarSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADeVEERQKLVRALTELPLG 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 640 REKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQiqeFKKR 719
Cdd:pfam02463 577 ARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLR---KGVS 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 720 DAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEK 799
Cdd:pfam02463 654 LEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDK 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 800 ANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENR 879
Cdd:pfam02463 734 INEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEE 813
|
650 660
....*....|....*....|.
gi 2462553644 880 SNQVRCAEKKLQHKELESQEQ 900
Cdd:pfam02463 814 AELLEEEQLLIEQEEKIKEEE 834
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
254-899 |
3.05e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 3.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 254 REKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLY---RSKQHETEETIRKLEKKVQTL---IRDC 327
Cdd:TIGR02168 221 ELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLeelRLEVSELEEEIEELQKELYALaneISRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 328 QVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNA--VAEMEQEKFDLQKQHT------ENIQELLEDTNVRLNKMESE 399
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAeeLAELEEKLEELKEELEsleaelEELEAELEELESRLEELEEQ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 400 YMAQTQ---STNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQI-----TCSELQEVKARRNTLHKEKDHLV 471
Cdd:TIGR02168 381 LETLRSkvaQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaelkeLQAELEELEEELEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 472 NDYEQNMKLLQTKYDADINLLKQEHALSASKAS--SMIEELEQNVCQLKQQLQESE-----LQRKQQLRDQENKFQMEKS 544
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQARLDSleRLQENLEGFSEGVKALLKNQSglsgiLGVLSELISVDEGYEAAIE 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 545 -----HLKHI------YEKKAHDLQSELDKGK------------------EDTQKKIHKFEEALKEKEEQ---------- 585
Cdd:TIGR02168 541 aalggRLQAVvvenlnAAKKAIAFLKQNELGRvtflpldsikgteiqgndREILKNIEGFLGVAKDLVKFdpklrkalsy 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 586 -LTRVTEVQRLQAQQADAALEEFK-RQVELNSEKVYA----------------EMKEQMEKVEADLTRSKSLREKQSKEf 647
Cdd:TIGR02168 621 lLGGVLVVDDLDNALELAKKLRPGyRIVTLDGDLVRPggvitggsaktnssilERRREIEELEEKIEELEEKIAELEKA- 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 648 LWQLEDIRQRYEQQIVELKLEHEQekthLLQQHNAEKDSLVRdHEREIENLEKQLRAANMEHENQIQEfkkrdaqvIADM 727
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEE----LSRQISALRKDLAR-LEAEVEQLEERIAQLSKELTELEAE--------IEEL 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 728 EAQVHKLREELINVNSQRKQQlvelgllreeEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQI 807
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEEL----------EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 808 EKEYTQklakSSQIIAELQTTISSLKEENSQQQlAAERRLQDVRQKFEDEKKQLirdnDQAIKVLQDELENRSNQVRCAE 887
Cdd:TIGR02168 837 ERRLED----LEEQIEELSEDIESLAAEIEELE-ELIEELESELEALLNERASL----EEALALLRSELEELSEELRELE 907
|
730
....*....|..
gi 2462553644 888 KKLQHKELESQE 899
Cdd:TIGR02168 908 SKRSELRRELEE 919
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
507-794 |
5.82e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 5.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 507 IEELEQNVCQLKQQLQESELQRKQ-QLRDQENKFQMEKSHLKHIyEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEeQ 585
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEaELEELEAELEELEAELAEL-EAELEELRLELEELELELEEAQAEEYELLAELA-R 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 586 LTRVTEVQRLQAQQADAALEEFKRQVELNSEKVyAEMKEQMEKVEADLTRSKSLREkQSKEFLWQLEDIRQRYEQQIVEL 665
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEEL-EELEEELEELEEELEEAEEELE-EAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 666 KLEHEQEKTHLLQQHNAEKDSlvRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQR 745
Cdd:COG1196 378 EEELEELAEELLEALRAAAEL--AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 2462553644 746 KQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETE 794
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
572-900 |
7.64e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 7.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 572 IHKFEEALKEKEEQLTRVTE-VQRLQAqqadaALEEFKRQV---ELNSEKV--YAEMKEQMEKVEADL--TRSKSLREKq 643
Cdd:TIGR02168 167 ISKYKERRKETERKLERTREnLDRLED-----ILNELERQLkslERQAEKAerYKELKAELRELELALlvLRLEELREE- 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 644 skeflwqlediRQRYEQQIVELKLEHEQEKTHLlqqhnAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEfkkrdaqv 723
Cdd:TIGR02168 241 -----------LEELQEELKEAEEELEELTAEL-----QELEEKLEELRLEVSELEEEIEELQKELYALANE-------- 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 724 IADMEAQVHKLREELINVNSQRKQQLVELGLL--REEEKQRATREHEIVVNKLKAESEKMKIELKkthaaETEMTLEKAN 801
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELesKLDELAEELAELEEKLEELKEELESLEAELE-----ELEAELEELE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 802 SKLKQIEKEYTQKLAKSSQI---IAELQTTISSLKEENSQQQLAAERRLQ---DVRQKFEDEKKQLIRDNDQAIKVLQDE 875
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLelqIASLNNEIERLEARLERLEDRRERLQQeieELLKKLEEAELKELQAELEELEEELEE 451
|
330 340
....*....|....*....|....*
gi 2462553644 876 LENRSNQVRCAEKKLQHKELESQEQ 900
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQA 476
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
238-820 |
8.68e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 8.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 238 LRKSSSFHDDHFLSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTL--YRSKQHETEETIRK 315
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeAKKKAEEAKKKADA 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 316 LEKKVQTLIRDCQVIRETKEDQIAELKKICEQS-TESLNNDWEKKLHNAVAEMEQEKF---DLQKQHTENIQELLEDTNV 391
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAeAAEKKKEEAKKKADAAKKKAEEKKkadEAKKKAEEDKKKADELKKA 1413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 392 RLNKMESEYMAQTQSTNHMIKELEARVQQ------LTGEAENS----NLQRQKLIQEKAELERCYQITCSELQEVKARRN 461
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEakkadeAKKKAEEAkkaeEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE 1493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 462 TLHKEKDHLVNDYEQNMKLLQTKYDADI----NLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRK--QQLRDQ 535
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAkkadEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKaeEAKKAE 1573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 536 ENKFQMEK--SHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEAlKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVEL 613
Cdd:PTZ00121 1574 EDKNMALRkaEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA-KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 614 NSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQ---IVELKLEHEQEKTHLLQQHNAEKDSLVRD 690
Cdd:PTZ00121 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEakkAEELKKKEAEEKKKAEELKKAEEENKIKA 1732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 691 HEREIENLEKQLRAANMEHEnqiQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIV 770
Cdd:PTZ00121 1733 EEAKKEAEEDKKKAEEAKKD---EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFAN 1809
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 2462553644 771 VNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQ 820
Cdd:PTZ00121 1810 IIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNE 1859
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
525-902 |
1.42e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 1.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 525 ELQRKQQLRDQENKFQMEKSHLKHIYEKKAhdlqSELDKGKEDTQKKihkfEEALKEKEEQLTRVTEVQRLQAQQADAAL 604
Cdd:PTZ00121 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKA----DEAKKKAEEAKKK----ADAAKKKAEEAKKAAEAAKAEAEAAADEA 1359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 605 EEFKRQVELnsekvyAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEqqivELKLEHEQEKthllqqhNAEK 684
Cdd:PTZ00121 1360 EAAEEKAEA------AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD----ELKKAAAAKK-------KADE 1422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 685 DSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQlvELGLLREEEKQRAT 764
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD--EAKKKAEEAKKKAD 1500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 765 REheivvnKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAE 844
Cdd:PTZ00121 1501 EA------KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE 1574
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462553644 845 RRLQDVRqKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEK-KLQHKELESQEQSR 902
Cdd:PTZ00121 1575 DKNMALR-KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEaKIKAEELKKAEEEK 1632
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
293-863 |
1.55e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 55.61 E-value: 1.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 293 NEIEELKTLYRSKQH------ETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAVAE 366
Cdd:pfam12128 248 QEFNTLESAELRLSHlhfgykSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEAL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 367 MEQ----EKFDLQKQHTEniQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQ--------QLTGEAENSNLQRQK 434
Cdd:pfam12128 328 EDQhgafLDADIETAAAD--QEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSkikeqnnrDIAGIKDKLAKIREA 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 435 LIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEhALSASKASSMIEELEQnv 514
Cdd:pfam12128 406 RDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQL-ENFDERIERAREEQEA-- 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 515 CQLKQQLQESELQRKQQLRDQEN-----------KFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHK--------- 574
Cdd:pfam12128 483 ANAEVERLQSELRQARKRRDQASealrqasrrleERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKvispellhr 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 575 ------FEEALKEKEEQLTRVT-EVQRLQAQQADAALEEFKRQVElNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEf 647
Cdd:pfam12128 563 tdldpeVWDGSVGGELNLYGVKlDLKRIDVPEWAASEEELRERLD-KAEEALQSAREKQAAAEEQLVQANGELEKASRE- 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 648 lwqLEDIRQRYEQ---QIVELKLEHEQEKTHLLQQHNAEKDSLvrdhEREIENLEKQLRAANMEHENQIQEFKKRDAQVI 724
Cdd:pfam12128 641 ---ETFARTALKNarlDLRRLFDEKQSEKDKKNKALAERKDSA----NERLNSLEAQLKQLDKKHQAWLEEQKEQKREAR 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 725 ADMEAQVHKLREELINvnsqrKQQLVELGLLREEEKQRAtreheivvnKLKAESEKMKIELKKTHAAETEMtlekanSKL 804
Cdd:pfam12128 714 TEKQAYWQVVEGALDA-----QLALLKAAIAARRSGAKA---------ELKALETWYKRDLASLGVDPDVI------AKL 773
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462553644 805 KQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIR 863
Cdd:pfam12128 774 KREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLAR 832
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
254-863 |
2.03e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 2.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 254 REKELDMKTKMMEAKFHEEKLKLQQKHD--ADVQKILERKNNEIEEL---KTLYRSKQHETEETIRKLEKKVQTLIRDcq 328
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSELEEeiEELQKELYALANEISRLeqqKQILRERLANLERQLEELEAQLEELESK-- 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 329 viRETKEDQIAELKKICEQSTESLNNdwekkLHNAVAEMEQEKFDLqKQHTENIQELLEDTNVRLNKMESeymaQTQSTN 408
Cdd:TIGR02168 332 --LDELAEELAELEEKLEELKEELES-----LEAELEELEAELEEL-ESRLEELEEQLETLRSKVAQLEL----QIASLN 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 409 HMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERcyQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDAD 488
Cdd:TIGR02168 400 NEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 489 INLLKQEHALSASKAS--SMIEELEQNVCQLKQQLQESE-----LQRKQQLRDQENKFQMEKS-----HLKHI------Y 550
Cdd:TIGR02168 478 DAAERELAQLQARLDSleRLQENLEGFSEGVKALLKNQSglsgiLGVLSELISVDEGYEAAIEaalggRLQAVvvenlnA 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 551 EKKAHDLQSELDKGK------------------EDTQKKIHKFEEALKEKEEQ-----------LTRVTEVQRLQAQQAD 601
Cdd:TIGR02168 558 AKKAIAFLKQNELGRvtflpldsikgteiqgndREILKNIEGFLGVAKDLVKFdpklrkalsylLGGVLVVDDLDNALEL 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 602 AALEEFK-RQVELNSEKVYA----------------EMKEQMEKVEADLTRSKSLREKQSKEfLWQLEDIRQRYEQQIVE 664
Cdd:TIGR02168 638 AKKLRPGyRIVTLDGDLVRPggvitggsaktnssilERRREIEELEEKIEELEEKIAELEKA-LAELRKELEELEEELEQ 716
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 665 LKLEHEQekthLLQQHNAEKDSLVRdHEREIENLEKQL-------------RAANMEHENQIQEFKKRDAQVIADMEAQV 731
Cdd:TIGR02168 717 LRKELEE----LSRQISALRKDLAR-LEAEVEQLEERIaqlskelteleaeIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 732 HKLREELINVNSQRKQQLVELGLLREE-----------EKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKA 800
Cdd:TIGR02168 792 EQLKEELKALREALDELRAELTLLNEEaanlrerleslERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL 871
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462553644 801 NSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQlAAERRLQDVRQKFEDEKKQLIR 863
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELEELSEELRELESKRS-ELRRELEELREKLAQLELRLEG 933
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
402-736 |
2.08e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 2.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 402 AQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLL 481
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 482 QTKYDADINLLKQEHALSA--SKASSMIEELEQNVCQLKQQLQESElQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQS 559
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEErlEEAEEELAEAEAEIEELEAQIEQLK-EELKALREALDELRAELTLLNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 560 ELDKgKEDTQKKIHKFEEALKEKEEQLTRVT------EVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEA-- 631
Cdd:TIGR02168 829 LERR-IAATERRLEDLEEQIEELSEDIESLAaeieelEELIEELESELEALLNERASLEEALALLRSELEELSEELREle 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 632 ----DLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSL--VRDHEREIENLEKQLRAA 705
Cdd:TIGR02168 908 skrsELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEeeARRRLKRLENKIKELGPV 987
|
330 340 350
....*....|....*....|....*....|....*
gi 2462553644 706 NMEHENQIQEFKKR----DAQvIADMEAQVHKLRE 736
Cdd:TIGR02168 988 NLAAIEEYEELKERydflTAQ-KEDLTEAKETLEE 1021
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
635-900 |
2.43e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 54.74 E-value: 2.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 635 RSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLV-RDHEREIENLEKQLraanmehENQI 713
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIyAEQERMAMEREREL-------ERIR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 714 QEFKKRDAQVIADME--AQVHKLRE-ELINVNSQRKQQLVELGL-------LREEEKQRATREHEIVVNKLKAESEKMKI 783
Cdd:pfam17380 355 QEERKRELERIRQEEiaMEISRMRElERLQMERQQKNERVRQELeaarkvkILEEERQRKIQQQKVEMEQIRAEQEEARQ 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 784 ELKKTHAAETEMTLEkansKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEdEKKQLIR 863
Cdd:pfam17380 435 REVRRLEEERAREME----RVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELE-ERKQAMI 509
|
250 260 270
....*....|....*....|....*....|....*..
gi 2462553644 864 DNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQ 900
Cdd:pfam17380 510 EEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQ 546
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
285-631 |
3.23e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 3.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 285 QKILERKNnEIEELktlyRSKQHETEETIRKLEKKVQTLirdcQVIRETKEDQIAELKKICEQSTESLNNdwekklhnav 364
Cdd:TIGR02168 670 SSILERRR-EIEEL----EEKIEELEEKIAELEKALAEL----RKELEELEEELEQLRKELEELSRQISA---------- 730
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 365 AEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELER 444
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 445 CYQITCSELQEVKARRNTLHKEKDHLVndyEQNMKLLQTKYDADINLLKQEHALSASKASsmIEELEQNVCQLKQQLQES 524
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAATE---RRLEDLEEQIEELSEDIESLAAEIEELEEL--IEELESELEALLNERASL 885
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 525 ELQRKQQLRDQENKFQMEKSHlkhiyEKKAHDLQSELDKgkedTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAAL 604
Cdd:TIGR02168 886 EEALALLRSELEELSEELREL-----ESKRSELRRELEE----LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEA 956
|
330 340
....*....|....*....|....*..
gi 2462553644 605 EEFKRQVELNSEKVYAEMKEQMEKVEA 631
Cdd:TIGR02168 957 EALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
254-878 |
3.83e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 3.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 254 REKELDMKTKMMEAKFHEEKLKLQQKHDadVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRET 333
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEELEA--ELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 334 KEDQIAELkkicEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHtENIQELLEDTNVRLNKMESEY------MAQTQST 407
Cdd:TIGR02168 416 RERLQQEI----EELLKKLEEAELKELQAELEELEEELEELQEEL-ERLEEALEELREELEEAEQALdaaereLAQLQAR 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 408 NHMIKELEARVQQLTGEAENSNLQRQK----------LIQEKAELERCYQITCSE---------LQEVKARRNTLHKEKD 468
Cdd:TIGR02168 491 LDSLERLQENLEGFSEGVKALLKNQSGlsgilgvlseLISVDEGYEAAIEAALGGrlqavvvenLNAAKKAIAFLKQNEL 570
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 469 HLVNDYEqnmklLQTKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQ------------ESELQRKQQLRDQE 536
Cdd:TIGR02168 571 GRVTFLP-----LDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvddlDNALELAKKLRPGY 645
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 537 NKFQMEKSHLKH---IYEKKAHDLQSELDKGKE--DTQKKIHKFEEALKEKEEQLTRVtevqrLQAQQADAALEEFKRQV 611
Cdd:TIGR02168 646 RIVTLDGDLVRPggvITGGSAKTNSSILERRREieELEEKIEELEEKIAELEKALAEL-----RKELEELEEELEQLRKE 720
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 612 ELNSEKVYAEMKEQMEKVEAdltrskslREKQSKEFLWQLEDIRQRYEQQIVEL--KLEHEQEKTHLLQQHNAEKDSLVR 689
Cdd:TIGR02168 721 LEELSRQISALRKDLARLEA--------EVEQLEERIAQLSKELTELEAEIEELeeRLEEAEEELAEAEAEIEELEAQIE 792
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 690 DHEREIENLEKQLRAANMEHENQIQEFKKRdAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLRE--EEKQRATREH 767
Cdd:TIGR02168 793 QLKEELKALREALDELRAELTLLNEEAANL-RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAeiEELEELIEEL 871
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 768 EIVVNKLKAESEKMKIELK--KTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTisSLKEENSQQQLAAE- 844
Cdd:TIGR02168 872 ESELEALLNERASLEEALAllRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL--EVRIDNLQERLSEEy 949
|
650 660 670
....*....|....*....|....*....|....
gi 2462553644 845 RRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELEN 878
Cdd:TIGR02168 950 SLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
411-738 |
5.52e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 5.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 411 IKELEARVQQLTGEAEnsnlQRQKLIQEKAELERC-YQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTkYDADI 489
Cdd:TIGR02168 195 LNELERQLKSLERQAE----KAERYKELKAELRELeLALLVLRLEELREELEELQEELKEAEEELEELTAELQE-LEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 490 NLLKQEHalsaSKASSMIEELEQNVCQLKQQLQESElQRKQQLRDQENKFQMEKSHLKHIYEKkahdLQSELDKGKEDTQ 569
Cdd:TIGR02168 270 EELRLEV----SELEEEIEELQKELYALANEISRLE-QQKQILRERLANLERQLEELEAQLEE----LESKLDELAEELA 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 570 KKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEkvYAEMKEQMEKVEADLTRSKSLREkqskeflw 649
Cdd:TIGR02168 341 ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK--VAQLELQIASLNNEIERLEARLE-------- 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 650 QLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKdslvrdhEREIENLEKQLRAANMEHENQIQEFKKRDaQVIADMEA 729
Cdd:TIGR02168 411 RLEDRRERLQQEIEELLKKLEEAELKELQAELEEL-------EEELEELQEELERLEEALEELREELEEAE-QALDAAER 482
|
....*....
gi 2462553644 730 QVHKLREEL 738
Cdd:TIGR02168 483 ELAQLQARL 491
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
380-896 |
6.97e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 6.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 380 ENIQELLEDTNVRLNKMEsEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQitcsELQEVKAR 459
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLE-KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 460 RNTLHKEKDHLvndyEQNMKLLQTKydadinllKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRK-QQLRDQENK 538
Cdd:PRK03918 240 IEELEKELESL----EGSKRKLEEK--------IRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKlSEFYEEYLD 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 539 FQMEKSHLKHIYEKKAHDLQS-------------ELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALE 605
Cdd:PRK03918 308 ELREIEKRLSRLEEEINGIEErikeleekeerleELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 606 EFKRQVElNSEKVYAEMKEQMEKVEADLTRSKSlREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEkthLLQQHNAEKD 685
Cdd:PRK03918 388 KLEKELE-ELEKAKEEIEEEISKITARIGELKK-EIKELKKAIEELKKAKGKCPVCGRELTEEHRKE---LLEEYTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 686 SlVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQviadmeaqvHKLREELINVNSqrkqqlvELGLLREEEKQRATR 765
Cdd:PRK03918 463 R-IEKELKEIEEKERKLRKELRELEKVLKKESELIKL---------KELAEQLKELEE-------KLKKYNLEELEKKAE 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 766 EHEIV---VNKLKAESEKMKIELKKTHA-----AETEMTLEKANSKLKQIEKEYTQKLAKSsqiIAELQTTISSLKE--E 835
Cdd:PRK03918 526 EYEKLkekLIKLKGEIKSLKKELEKLEElkkklAELEKKLDELEEELAELLKELEELGFES---VEELEERLKELEPfyN 602
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462553644 836 NSQQQLAAERRLQDVRQKFEDEKKQL--IRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELE 896
Cdd:PRK03918 603 EYLELKDAEKELEREEKELKKLEEELdkAFEELAETEKRLEELRKELEELEKKYSEEEYEELR 665
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
266-637 |
7.96e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 7.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 266 EAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKL---EKKVQTLIRDCQVIRETKEDQIAELK 342
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIsalRKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 343 KICEQSTEslNNDWEKKLHNAVAEMEQEKFDLQKQhTENIQELLEDTNVRLNKMESEYmaqtQSTNHMIKELEARVQQLT 422
Cdd:TIGR02168 758 ELEAEIEE--LEERLEEAEEELAEAEAEIEELEAQ-IEQLKEELKALREALDELRAEL----TLLNEEAANLRERLESLE 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 423 GEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDY---EQNMKLLQTKYDadinllkqehals 499
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERaslEEALALLRSELE------------- 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 500 asKASSMIEELEQNVCQLKQQLQESElQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEAL 579
Cdd:TIGR02168 898 --ELSEELRELESKRSELRRELEELR-EKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRL 974
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462553644 580 KEKEEQLTRVTEVQRlqaqqadAALEEFKRQvelnsEKVYAEMKEQMEkveaDLTRSK 637
Cdd:TIGR02168 975 KRLENKIKELGPVNL-------AAIEEYEEL-----KERYDFLTAQKE----DLTEAK 1016
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
506-900 |
1.20e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.43 E-value: 1.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 506 MIEELEQNVCQLKQQLQES-ELQRKQQ---------LRDQENKFQMEKSHLKHIYEKKAhdlQSELDKgKEDTQKKIHKF 575
Cdd:pfam15921 79 VLEEYSHQVKDLQRRLNESnELHEKQKfylrqsvidLQTKLQEMQMERDAMADIRRRES---QSQEDL-RNQLQNTVHEL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 576 EEALKEKEEQL----TRVTEVQRLQAQQaDAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQL 651
Cdd:pfam15921 155 EAAKCLKEDMLedsnTQIEQLRKMMLSH-EGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEI 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 652 EDIRQR---YEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEhENQIQefkkrdaqviadme 728
Cdd:pfam15921 234 SYLKGRifpVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQ-ANSIQ-------------- 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 729 AQVHKLREELINVNSQRKQQLVELgllreeekqratrehEIVVNKLKAESEKMKiELKKTHAAETEMTLEKANSKLKQIE 808
Cdd:pfam15921 299 SQLEIIQEQARNQNSMYMRQLSDL---------------ESTVSQLRSELREAK-RMYEDKIEELEKQLVLANSELTEAR 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 809 KEYTQKLAKSSQIIAELQTTISSLKEEnsQQQLAAERrlqdvrqkfEDEKKQLIRDNDQAIKV--LQDELENRSNQVRCA 886
Cdd:pfam15921 363 TERDQFSQESGNLDDQLQKLLADLHKR--EKELSLEK---------EQNKRLWDRDTGNSITIdhLRRELDDRNMEVQRL 431
|
410
....*....|....
gi 2462553644 887 EKKLQHKELESQEQ 900
Cdd:pfam15921 432 EALLKAMKSECQGQ 445
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
580-800 |
1.45e-06 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 52.14 E-value: 1.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 580 KEKEEQLTRVTEVQRLQAQQADAALEEFKRQVelnsEKVYAEMKEQMEKVEAdltRSKSLREKQskeflwqlediRQRYE 659
Cdd:PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEA----EKLKEELEEKKEKLQE---EEDKLLEEA-----------EKEAQ 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 660 QQIVELKLEHEQEKTHLLQQHNAEKDSLVrdhEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLRE--E 737
Cdd:PRK00409 577 QAIKEAKKEADEIIKELRQLQKGGYASVK---AHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQkgE 653
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462553644 738 LINVNSQRKQQL--------VELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKA 800
Cdd:PRK00409 654 VLSIPDDKEAIVqagimkmkVPLSDLEKIQKPKKKKKKKPKTVKPKPRTVSLELDLRGMRYEEALERLDKY 724
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
239-901 |
1.46e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 1.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 239 RKSSSFHDDHFLSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKtlyRSKQHETEETIRKLEK 318
Cdd:PTZ00121 1062 AKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKK---KAEDARKAEEARKAED 1138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 319 kvqtlIRDCQVIRETKEDQIAELKKICEQS---TESLNNDWEKKLHNAVAEMEQEKFDLQKQHTE--NIQELLEDTNVR- 392
Cdd:PTZ00121 1139 -----ARKAEEARKAEDAKRVEIARKAEDArkaEEARKAEDAKKAEAARKAEEVRKAEELRKAEDarKAEAARKAEEERk 1213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 393 ---LNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDH 469
Cdd:PTZ00121 1214 aeeARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD 1293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 470 LVNDYEQNMKLLQTKYdadinllKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKhi 549
Cdd:PTZ00121 1294 EAKKAEEKKKADEAKK-------KAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE-- 1364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 550 yEKKAHDLQSELDKGKEDTQKK----IHKFEEALKEKEEQLTRVTEVQRLQAQQADAalEEFKRQVElNSEKVYAEMKEQ 625
Cdd:PTZ00121 1365 -KAEAAEKKKEEAKKKADAAKKkaeeKKKADEAKKKAEEDKKKADELKKAAAAKKKA--DEAKKKAE-EKKKADEAKKKA 1440
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 626 MEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQivelKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAA 705
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK----KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK 1516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 706 NMEHENQIQEFKKRDAQVIAD--MEAQVHKLREELINVNSQRKQQLVElgllREEEKQR-------ATREHEIV--VNKL 774
Cdd:PTZ00121 1517 KAEEAKKADEAKKAEEAKKADeaKKAEEKKKADELKKAEELKKAEEKK----KAEEAKKaeedknmALRKAEEAkkAEEA 1592
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 775 KAESEKMKIELKKTHAAETEMTLEKANSKLKQIEK--EYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAE-------- 844
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKaeEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAeeakkaee 1672
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462553644 845 --RRLQDVRQKFEDEKK---QLIRDNDQAIKVLQ-----DELENRSNQVRCAEKKLQHKELESQEQS 901
Cdd:PTZ00121 1673 dkKKAEEAKKAEEDEKKaaeALKKEAEEAKKAEElkkkeAEEKKKAEELKKAEEENKIKAEEAKKEA 1739
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
302-693 |
1.96e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 1.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 302 YRSKQHETEetiRKLEKKVQTLIRDCQVIRETKEdQIAELKKICEQSteslnndweKKLHNAVAEMEQEKFDLQKQHTEN 381
Cdd:TIGR02168 170 YKERRKETE---RKLERTRENLDRLEDILNELER-QLKSLERQAEKA---------ERYKELKAELRELELALLVLRLEE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 382 IQELLEDTNVRLNKMESEymaqtqstnhmIKELEARVQQLTGEAENSNLQRQKLIQEKAELErcyqitcSELQEVKARRN 461
Cdd:TIGR02168 237 LREELEELQEELKEAEEE-----------LEELTAELQELEEKLEELRLEVSELEEEIEELQ-------KELYALANEIS 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 462 TLHKEKDHlvndYEQNMKLLQTKYDadinllkqehalsasKASSMIEELEQNvcqlKQQLQESELQRKQQLRDQENKFQM 541
Cdd:TIGR02168 299 RLEQQKQI----LRERLANLERQLE---------------ELEAQLEELESK----LDELAEELAELEEKLEELKEELES 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 542 EKSHLkhiyeKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLtrvtEVQRLQAQQADAALEEFKRQVELNSEKVYAE 621
Cdd:TIGR02168 356 LEAEL-----EELEAELEELESRLEELEEQLETLRSKVAQLELQI----ASLNNEIERLEARLERLEDRRERLQQEIEEL 426
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462553644 622 MKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYE--QQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHER 693
Cdd:TIGR02168 427 LKKLEEAELKELQAELEELEEELEELQEELERLEEALEelREELEEAEQALDAAERELAQLQARLDSLERLQEN 500
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
248-902 |
2.68e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.51 E-value: 2.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 248 HFLSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDC 327
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 328 QVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKFD---LQKQHTENIQELLEDTNVRLNKMESEYMAQT 404
Cdd:pfam02463 314 EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEeleKLQEKLEQLEEELLAKKKLESERLSSAAKLK 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 405 QSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITcSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTK 484
Cdd:pfam02463 394 EEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEES-IELKQGKLTEEKEELEKQELKLLKDELELKKSED 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 485 YDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKG 564
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVE 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 565 KEDTQKKIHKFEEALKEKEEQL----TRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLR 640
Cdd:pfam02463 553 VSATADEVEERQKLVRALTELPlgarKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDT 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 641 EKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRD 720
Cdd:pfam02463 633 ELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEEL 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 721 AQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKA 800
Cdd:pfam02463 713 KKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK 792
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 801 NSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRS 880
Cdd:pfam02463 793 EEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQEL 872
|
650 660
....*....|....*....|..
gi 2462553644 881 NQVRCAEKKLQHKELESQEQSR 902
Cdd:pfam02463 873 LLKEEELEEQKLKDELESKEEK 894
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
555-861 |
3.49e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 50.89 E-value: 3.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 555 HDLQSELDKGKEDTQKKIHKFE-EALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVEL--NSEKVYAEMKEQMEKVEA 631
Cdd:pfam17380 276 HIVQHQKAVSERQQQEKFEKMEqERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIyaEQERMAMERERELERIRQ 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 632 DlTRSKSLREKQSKEFLWQLEDIRQryeqqIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHEN 711
Cdd:pfam17380 356 E-ERKRELERIRQEEIAMEISRMRE-----LERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 712 QiqEFKKRDAQVIADMEA-QVHKLREElinvnSQRKQQLVELGLLREEEKQRATREHEIVVNKLK-AESEKMKIELKKTH 789
Cdd:pfam17380 430 E--EARQREVRRLEEERArEMERVRLE-----EQERQQQVERLRQQEEERKRKKLELEKEKRDRKrAEEQRRKILEKELE 502
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462553644 790 AAETEMTLEKANSKLKQIEKEYTQKlakssqIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQL 861
Cdd:pfam17380 503 ERKQAMIEEERKRKLLEKEMEERQK------AIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRL 568
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
557-775 |
4.72e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.40 E-value: 4.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 557 LQSELDKGKEDTQKKIHKFEEALKEKEEQLtrvtevqrlqaQQADAALEEFKRQ---VELNSE-----KVYAEMKEQMEK 628
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKEL-----------EEAEAALEEFRQKnglVDLSEEaklllQQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 629 VEADLTRSKSLR---EKQSKEFLWQLEDIR-----QRYEQQIVELKLEHEQEKTHLLQQHNAekdslVRDHEREIENLEK 700
Cdd:COG3206 231 ARAELAEAEARLaalRAQLGSGPDALPELLqspviQQLRAQLAELEAELAELSARYTPNHPD-----VIALRAQIAALRA 305
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462553644 701 QLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRkQQLVELgllrEEEKQRATREHEIVVNKLK 775
Cdd:COG3206 306 QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE-AELRRL----EREVEVARELYESLLQRLE 375
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
502-865 |
5.04e-06 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 50.22 E-value: 5.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 502 KASSMIEELEQNVCQLKQQLQESeLQRKQQLRDQENKFQMEKSHLKHIYEKkahdLQSELDKGKedtqkkiHKFEEALKE 581
Cdd:PRK04778 102 KAKHEINEIESLLDLIEEDIEQI-LEELQELLESEEKNREEVEQLKDLYRE----LRKSLLANR-------FSFGPALDE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 582 KEEQLtrvtevqrlqaqqaDAALEEFKRQVELNSE-------KVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDI 654
Cdd:PRK04778 170 LEKQL--------------ENLEEEFSQFVELTESgdyvearEILDQLEEELAALEQIMEEIPELLKELQTELPDQLQEL 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 655 RQRYEQQIVE-LKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAAN---------MEHE----NQIQEFKKRD 720
Cdd:PRK04778 236 KAGYRELVEEgYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQeridqlydiLEREvkarKYVEKNSDTL 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 721 AQVIADMEAQVHKLREELinvnsqrkQQLVELGLLREEEKQRAtREHEIVVNKLKAESEKMKIELKKTHAA--ETEMTLE 798
Cdd:PRK04778 316 PDFLEHAKEQNKELKEEI--------DRVKQSYTLNESELESV-RQLEKQLESLEKQYDEITERIAEQEIAysELQEELE 386
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462553644 799 KANSKLKQIEKEytqklakssqiIAELQTTISSLKEEnsqqQLAAERRLQDVRQKFEDEKKQLIRDN 865
Cdd:PRK04778 387 EILKQLEEIEKE-----------QEKLSEMLQGLRKD----ELEAREKLERYRNKLHEIKRYLEKSN 438
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
598-835 |
6.73e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 6.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 598 QQADAALEEFKRqvelnsekvYAEMKEQMEKVEADLTRSKSLREKQSKefLWQLEDIRQRYEQQIVELKLEHEQEKTHLL 677
Cdd:COG4913 225 EAADALVEHFDD---------LERAHEALEDAREQIELLEPIRELAER--YAAARERLAELEYLRAALRLWFAQRRLELL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 678 QQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQ---QLVELGL 754
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARleaLLAALGL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 755 LREEEKQRATREHEivvnKLKAESEKMKIELKKTHAAETEM--TLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSL 832
Cdd:COG4913 374 PLPASAEEFAALRA----EAAALLEALEEELEALEEALAEAeaALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL 449
|
...
gi 2462553644 833 KEE 835
Cdd:COG4913 450 AEA 452
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
255-856 |
7.08e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.97 E-value: 7.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 255 EKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHET------EETIRKLEKKVQTLIRDCQ 328
Cdd:TIGR00618 276 EAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRaahvkqQSSIEEQRRLLQTLHSQEI 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 329 VIRETKEDQIAELKKICEQSTEslnndwekkLHNAVAEMEQEKFDLQK-QHTENIQELLEDTNVRLNKMESEYMAQTQST 407
Cdd:TIGR00618 356 HIRDAHEVATSIREISCQQHTL---------TQHIHTLQQQKTTLTQKlQSLCKELDILQREQATIDTRTSAFRDLQGQL 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 408 NHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTL--HKEKDHLVNDYEQNMKLLQTKY 485
Cdd:TIGR00618 427 AHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHlqETRKKAVVLARLLELQEEPCPL 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 486 DADINLLKQE--HALSASKASSMIEELEQNVCQLKQQLQE------SELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDL 557
Cdd:TIGR00618 507 CGSCIHPNPArqDIDNPGPLTRRMQRGEQTYAQLETSEEDvyhqltSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDI 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 558 QSeLDKGKEDTQKKIHKFEEALKEKEEQLTRvtEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSK 637
Cdd:TIGR00618 587 PN-LQNITVRLQDLTEKLSEAEDMLACEQHA--LLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREH 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 638 SLREKQSKEFLWQledIRQRYEQqivelKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFK 717
Cdd:TIGR00618 664 ALSIRVLPKELLA---SRQLALQ-----KMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLA 735
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 718 KRD---AQVIADMEAQVHKLREELINVNSQRKQQL-VELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAET 793
Cdd:TIGR00618 736 AREdalNQSLKELMHQARTVLKARTEAHFNNNEEVtAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSD 815
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462553644 794 EMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLkEENSQQQLAAERRLQDVRQKFED 856
Cdd:TIGR00618 816 EDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKY-EECSKQLAQLTQEQAKIIQLSDK 877
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
314-676 |
1.00e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 49.52 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 314 RKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLNNDWEK--KLHNAVAEMEQEKFDLQKqhtENIQELLEDTNV 391
Cdd:PLN02939 48 KKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSsdDDHNRASMQRDEAIAAID---NEQQTNSKDGEQ 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 392 RLNKMESEYMAQTQSTNHMIKEL-EARVQQLtGEAEnsnlqrqKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHL 470
Cdd:PLN02939 125 LSDFQLEDLVGMIQNAEKNILLLnQARLQAL-EDLE-------KILTEKEALQGKINILEMRLSETDARIKLAAQEKIHV 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 471 VNDYEQNMKLLqtkydadiNLLKQEHALSASKASSMIEEL----EQNVcQLKQQLQESELQRKQQLRDQENKFQMEKSHl 546
Cdd:PLN02939 197 EILEEQLEKLR--------NELLIRGATEGLCVHSLSKELdvlkEENM-LLKDDIQFLKAELIEVAETEERVFKLEKER- 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 547 kHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALE---EFKRQVE-----LNSEKV 618
Cdd:PLN02939 267 -SLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDqnqDLRDKVDkleasLKEANV 345
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462553644 619 YAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLedirQRYEQQIVEL-----KLEHEQEKTHL 676
Cdd:PLN02939 346 SKFSSYKVELLQQKLKLLEERLQASDHEIHSYI----QLYQESIKEFqdtlsKLKEESKKRSL 404
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
410-896 |
1.07e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 49.51 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 410 MIKELEARVQQ---LTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKyd 486
Cdd:PRK01156 174 VIDMLRAEISNidyLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMK-- 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 487 adiNLLKQEHALSASKAsSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHiYEKKAHDLQSELDKGKE 566
Cdd:PRK01156 252 ---NRYESEIKTAESDL-SMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIEN-KKQILSNIDAEINKYHA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 567 DtqkkIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSekvYAEMKEQMEKVEADLTRSKSLREKQSKE 646
Cdd:PRK01156 327 I----IKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKS---IESLKKKIEEYSKNIERMSAFISEILKI 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 647 FLWQLEDIRQRYEQQIVELkleheQEKTHLLQQHNAEKDSLvRDHEREIENLEKQLRAANM-------EHENQIQEFKKR 719
Cdd:PRK01156 400 QEIDPDAIKKELNEINVKL-----QDISSKVSSLNQRIRAL-RENLDELSRNMEMLNGQSVcpvcgttLGEEKSNHIINH 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 720 DAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIvVNKLKAESEKMKI---ELKKTHAAETEMT 796
Cdd:PRK01156 474 YNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNK-IESARADLEDIKIkinELKDKHDKYEEIK 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 797 LEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQlirdNDQAIKVLQDEL 876
Cdd:PRK01156 553 NRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSY----IDKSIREIENEA 628
|
490 500
....*....|....*....|.
gi 2462553644 877 ENRSNQVRCA-EKKLQHKELE 896
Cdd:PRK01156 629 NNLNNKYNEIqENKILIEKLR 649
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
256-669 |
2.14e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 2.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 256 KELD---MKTKMMEAKFHEEKLKLQQKHDADVQKIlERKNNEIEELKTLyRSKQHETEETIRKLEKKVQTLIRDCQVIRE 332
Cdd:pfam15921 419 RELDdrnMEVQRLEALLKAMKSECQGQMERQMAAI-QGKNESLEKVSSL-TAQLESTKEMLRKVVEELTAKKMTLESSER 496
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 333 TKEDQIAELKKIcEQSTESLNNDWEKKlhnavaemeQEKFDLQKQHTENIQEllEDTNVRLNKMESEYMA-QTQSTNHMI 411
Cdd:pfam15921 497 TVSDLTASLQEK-ERAIEATNAEITKL---------RSRVDLKLQELQHLKN--EGDHLRNVQTECEALKlQMAEKDKVI 564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 412 KELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVK--------------ARRNTLHKEKDHLVNDYEQN 477
Cdd:pfam15921 565 EILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKilkdkkdakireleARVSDLELEKVKLVNAGSER 644
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 478 MKLLQTKYDADINLLkQEHALSASKASSMIEE---LEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKA 554
Cdd:pfam15921 645 LRAVKDIKQERDQLL-NEVKTSRNELNSLSEDyevLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDG 723
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 555 HDLQSELDKGKEDT---------QKKIHKFEEALKE--KEEQLTRvTEVQRLQAQQADAALEEFKRQVELNSekvyaeMK 623
Cdd:pfam15921 724 HAMKVAMGMQKQITakrgqidalQSKIQFLEEAMTNanKEKHFLK-EEKNKLSQELSTVATEKNKMAGELEV------LR 796
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 2462553644 624 EQMEKVEADLTRSKSLREKQSKEFLwQLEDIRQRYEQQIVELKLEH 669
Cdd:pfam15921 797 SQERRLKEKVANMEVALDKASLQFA-ECQDIIQRQEQESVRLKLQH 841
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
366-861 |
2.48e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 48.25 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 366 EMEQEKFDLQKqhtenIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARvQQLTGEAENsnlQRQKLIQEKAELERC 445
Cdd:pfam01576 6 EMQAKEEELQK-----VKERQQKAESELKELEKKHQQLCEEKNALQEQLQAE-TELCAEAEE---MRARLAARKQELEEI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 446 YQITCSELQEVKARRNTLHKEKDHLvndyEQNMKLLQTKYDADiNLLKQEHALSASKASSMIEELEQNVCQLKQQLQESE 525
Cdd:pfam01576 77 LHELESRLEEEEERSQQLQNEKKKM----QQHIQDLEEQLDEE-EAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 526 LQRKQ----------QLRDQENKFQMeKSHLKHIYEKKAHDLQSEL---DKGKEDTQKKIHKFEEALKEKEEQLTRvtev 592
Cdd:pfam01576 152 KERKLleeriseftsNLAEEEEKAKS-LSKLKNKHEAMISDLEERLkkeEKGRQELEKAKRKLEGESTDLQEQIAE---- 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 593 qrLQAQQADAALEEFKRQVELNSEKVYAEmKEQMEKVEAdltrSKSLREKQS-----KEFLWQLEDIRQRYEQQIVELKL 667
Cdd:pfam01576 227 --LQAQIAELRAQLAKKEEELQAALARLE-EETAQKNNA----LKKIRELEAqiselQEDLESERAARNKAEKQRRDLGE 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 668 EHEQEKTHLL--QQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVN--- 742
Cdd:pfam01576 300 ELEALKTELEdtLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEkak 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 743 ----SQRKQQLVELGLL--REEEKQRATREHEIVVNKLKA---ESEKMKIEL-KKTHAAETEmtLEKANSKLKQIEKEYT 812
Cdd:pfam01576 380 qaleSENAELQAELRTLqqAKQDSEHKRKKLEGQLQELQArlsESERQRAELaEKLSKLQSE--LESVSSLLNEAEGKNI 457
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 2462553644 813 QKLAKSSQIIAELQTTISSLKEEnSQQQLAAERRLqdvrQKFEDEKKQL 861
Cdd:pfam01576 458 KLSKDVSSLESQLQDTQELLQEE-TRQKLNLSTRL----RQLEDERNSL 501
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
272-631 |
2.58e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 2.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 272 EKLKLQQKHDADVQKILERKNNEIEELKTlYRSKQHETEETIRKLEKKVQTLI----RDCQVIRETKEDQIAELKKICEQ 347
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRR-EREKAERYQALLKEKREYEGYELlkekEALERQKEAIERQLASLEEELEK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 348 STESLNnDWEKKLHNAVAEMEQEkfdlqkqhTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAEN 427
Cdd:TIGR02169 256 LTEEIS-ELEKRLEEIEQLLEEL--------NKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 428 SNLQRQKLIQEKAELERcyqitcsELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKyDADINLLKQEHALSASKASSMI 507
Cdd:TIGR02169 327 LEAEIDKLLAEIEELER-------EIEEERKRRDKLTEEYAELKEELEDLRAELEEV-DKEFAETRDELKDYREKLEKLK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 508 EELEQNVCQLKQqLQESELQRKQQLRDQENKfqmekshLKHIYEKKAhdlqsELDKGKEDTQKKIhkfeealKEKEEQLt 587
Cdd:TIGR02169 399 REINELKRELDR-LQEELQRLSEELADLNAA-------IAGIEAKIN-----ELEEEKEDKALEI-------KKQEWKL- 457
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 2462553644 588 rvtevQRLQAQQADAALEEFKRQVELNS-EKVYAEMKEQMEKVEA 631
Cdd:TIGR02169 458 -----EQLAADLSKYEQELYDLKEEYDRvEKELSKLQRELAEAEA 497
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
497-726 |
2.89e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 2.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 497 ALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHI--YEKKAHDLQSELDKGKE---DTQKK 571
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIaaLARRIRALEQELAALEAelaELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 572 IHKFEEALKEKEEQL-TRVTEVQRLQAQQADAAL------EEFKRQVELnSEKVYAEMKEQMEKVEADLTRSKSLREKQS 644
Cdd:COG4942 92 IAELRAELEAQKEELaELLRALYRLGRQPPLALLlspedfLDAVRRLQY-LKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 645 KEfLWQLEDIRQRYEQQIVELKLEhEQEKTHLLQQHNAEKDSLvrdhEREIENLEKQLRAANMEHENQIQEFKKRDAQVI 724
Cdd:COG4942 171 AE-RAELEALLAELEEERAALEAL-KAERQKLLARLEKELAEL----AAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
..
gi 2462553644 725 AD 726
Cdd:COG4942 245 AA 246
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
295-835 |
4.87e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.32 E-value: 4.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 295 IEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSteSLNNDWEKKLHNAVAEMEQEKFDL 374
Cdd:TIGR04523 59 LDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEI--KNDKEQKNKLEVELNKLEKQKKEN 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 375 QKQHTENIQELLEDTNvRLNKMESEYmaqtQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELErcyqITCSELQ 454
Cdd:TIGR04523 137 KKNIDKFLTEIKKKEK-ELEKLNNKY----NDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLE----LLLSNLK 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 455 EVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDaDINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESElQRKQQLRD 534
Cdd:TIGR04523 208 KKIQKNKSLESQISELKKQNNQLKDNIEKKQQ-EINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELE-QNNKKIKE 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 535 QENKFQMEKSHLKHIYEKKAHDLQSEL-------DKGKEDTQKKIHKFEEA---LKEKEEQLTRVTEVQRLQAQQADAAL 604
Cdd:TIGR04523 286 LEKQLNQLKSEISDLNNQKEQDWNKELkselknqEKKLEEIQNQISQNNKIisqLNEQISQLKKELTNSESENSEKQREL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 605 EEFKRQVE-LNSEK-VYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRY---EQQIVELKLEHEQEKTHL--L 677
Cdd:TIGR04523 366 EEKQNEIEkLKKENqSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKellEKEIERLKETIIKNNSEIkdL 445
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 678 QQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFK------KRDAQVIADMEAQVHKLREELINVNSQRKQQLVE 751
Cdd:TIGR04523 446 TNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEqkqkelKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEK 525
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 752 LGLLREEEKQRATREHEIVVNKLKAESEKMKIELKK---------THAAETEMTLEKANSKLKQIEKEYTQKLAKSSQII 822
Cdd:TIGR04523 526 IEKLESEKKEKESKISDLEDELNKDDFELKKENLEKeideknkeiEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEI 605
|
570
....*....|...
gi 2462553644 823 AELQTTISSLKEE 835
Cdd:TIGR04523 606 EEKEKKISSLEKE 618
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
518-672 |
5.93e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.69 E-value: 5.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 518 KQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQA 597
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKRE 109
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462553644 598 QQADAALEEFKRQvELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLwqLEDIRQRYEQQIVELKLEHEQE 672
Cdd:PRK12704 110 EELEKKEKELEQK-QQELEKKEEELEELIEEQLQELERISGLTAEEAKEIL--LEKVEEEARHEAAVLIKEIEEE 181
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
341-901 |
9.78e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 9.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 341 LKKICEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEaRVQQ 420
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLR-EALQ 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 421 LTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQE-HALS 499
Cdd:TIGR00618 237 QTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRiHTEL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 500 ASKASSMIEELEQNVCQLKQQLQESELQR-KQQLRDQENKFQMEKSHLKHIYEKKA---------HDLQSELDKGKEDTQ 569
Cdd:TIGR00618 317 QSKMRSRAKLLMKRAAHVKQQSSIEEQRRlLQTLHSQEIHIRDAHEVATSIREISCqqhtltqhiHTLQQQKTTLTQKLQ 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 570 KKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLW 649
Cdd:TIGR00618 397 SLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQ 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 650 QLEDIRQRYEqqivELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEhenQIQEFKKRDAQVIADMEA 729
Cdd:TIGR00618 477 TKEQIHLQET----RKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQ---RGEQTYAQLETSEEDVYH 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 730 QVHKLREELINVNSQRKQQLVELGLLRE------EEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSK 803
Cdd:TIGR00618 550 QLTSERKQRASLKEQMQEIQQSFSILTQcdnrskEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQD 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 804 LKQIEKEYTQKLAKSSQIIAELQTTISSLKEENS-----QQQLAAERRLQDVRQKFEDEKKQLIRDndqaikvlQDELEN 878
Cdd:TIGR00618 630 VRLHLQQCSQELALKLTALHALQLTLTQERVREHalsirVLPKELLASRQLALQKMQSEKEQLTYW--------KEMLAQ 701
|
570 580
....*....|....*....|...
gi 2462553644 879 RSNQVRCAEKKLQHKELESQEQS 901
Cdd:TIGR00618 702 CQTLLRELETHIEEYDREFNEIE 724
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
502-642 |
1.25e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 45.97 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 502 KASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQ-MEKSHLKhiYEKKAHDLQSELDKGKEDTQKKIHK-FEEAL 579
Cdd:PRK00409 506 EAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKeAEKLKEE--LEEKKEKLQEEEDKLLEEAEKEAQQaIKEAK 583
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462553644 580 KEKEEQLTRVTEVQRLQ-----AQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREK 642
Cdd:PRK00409 584 KEADEIIKELRQLQKGGyasvkAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQK 651
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
437-736 |
1.53e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 437 QEKAELERCYQitcsELQEVKARRNTLHKEKDHLvndyEQNMKLLQTKydadinllkqehalsASKASSMIEELEQNVCQ 516
Cdd:TIGR02169 671 SEPAELQRLRE----RLEGLKRELSSLQSELRRI----ENRLDELSQE---------------LSDASRKIGEIEKEIEQ 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 517 LKQQlQESELQRKQQLRDQENKFQMEKSHLKhiyekkahDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVtevqrlQ 596
Cdd:TIGR02169 728 LEQE-EEKLKERLEELEEDLSSLEQEIENVK--------SELKELEARIEELEEDLHKLEEALNDLEARLSHS------R 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 597 AQQADAALEEFKRQVELNSEKVyaemkEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQR---YEQQIVELKLEHEQEK 673
Cdd:TIGR02169 793 IPEIQAELSKLEEEVSRIEARL-----REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQiksIEKEIENLNGKKEELE 867
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462553644 674 THLLQQHNAEKD--SLVRDHEREIENLEKQLRAANM---EHENQIQEFKKRDAQVIADMEAQVHKLRE 736
Cdd:TIGR02169 868 EELEELEAALRDleSRLGDLKKERDELEAQLRELERkieELEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
650-862 |
1.61e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 650 QLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKD-----SLVRDHEREIENLEKQLRAANMEH---ENQIQEFKKRDA 721
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRiaalaRRIRALEQELAALEAELAELEKEIaelRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 722 QVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKAN 801
Cdd:COG4942 108 ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEER 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462553644 802 SKLKQIEKEYTQKLAKSS-------QIIAELQTTISSLKEE-NSQQQLAAERRLQDVRQKFEDEKKQLI 862
Cdd:COG4942 188 AALEALKAERQKLLARLEkelaelaAELAELQQEAEELEALiARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
390-848 |
2.54e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.94 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 390 NVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEA--ENSNlQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEK 467
Cdd:COG3096 237 ALRENRMTLEAIRVTQSDRDLFKHLITEATNYVAADymRHAN-ERRELSERALELRRELFGARRQLAEEQYRLVEMAREL 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 468 DHLvndyEQNMKLLQTKYDAD---INLLkqehaLSASKASSMIEELEQNVCQLKQQLQESELQRKqqlrdqenkfqmEKS 544
Cdd:COG3096 316 EEL----SARESDLEQDYQAAsdhLNLV-----QTALRQQEKIERYQEDLEELTERLEEQEEVVE------------EAA 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 545 HLKHIYEKKAHDLQSELDKGKedTQkkIHKFEEALkekEEQLTRVtevqrLQAQQADAALEEFKRQVEL------NSEKV 618
Cdd:COG3096 375 EQLAEAEARLEAAEEEVDSLK--SQ--LADYQQAL---DVQQTRA-----IQYQQAVQALEKARALCGLpdltpeNAEDY 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 619 YAEMKEQMEKVEADLtrsKSLREKQSKEflwqlEDIRQRYEQ--QIVELKLEH-----------EQEKTHLLQQHNAEKD 685
Cdd:COG3096 443 LAAFRAKEQQATEEV---LELEQKLSVA-----DAARRQFEKayELVCKIAGEversqawqtarELLRRYRSQQALAQRL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 686 SLVRDHEREIENLEKQLRAAnmehENQIQEFKKRDAQVIADmeaqvhklREELINVNSQRKQQLVELG-LLREEEKQRAT 764
Cdd:COG3096 515 QQLRAQLAELEQRLRQQQNA----ERLLEEFCQRIGQQLDA--------AEELEELLAELEAQLEELEeQAAEAVEQRSE 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 765 REHEivvnkLKAESEKMKiELKKTHAAetemtLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAE 844
Cdd:COG3096 583 LRQQ-----LEQLRARIK-ELAARAPA-----WLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAA 651
|
....
gi 2462553644 845 RRLQ 848
Cdd:COG3096 652 RKQA 655
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
272-841 |
2.74e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 2.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 272 EKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRdcqvireTKEDQIAELKK-------- 343
Cdd:pfam15921 285 EKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKR-------MYEDKIEELEKqlvlanse 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 344 ICEQSTE-----SLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNvrlNKMESEYMAQTQSTNHM-IKELEAR 417
Cdd:pfam15921 358 LTEARTErdqfsQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTG---NSITIDHLRRELDDRNMeVQRLEAL 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 418 VQQLTGEAENSNLQRQKLIQEKAE-LERCYQITCselqEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEH 496
Cdd:pfam15921 435 LKAMKSECQGQMERQMAAIQGKNEsLEKVSSLTA----QLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKER 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 497 ALSASKASsmIEELEQNVcqlkqqlqESELQRKQQLRDQENkfqmeksHLKHIyekkahdlQSELDKGKEDTQKKiHKFE 576
Cdd:pfam15921 511 AIEATNAE--ITKLRSRV--------DLKLQELQHLKNEGD-------HLRNV--------QTECEALKLQMAEK-DKVI 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 577 EALKEKEEQLTRVT-----EVQRLQAQQADAALEEFKRQVELNSEKVYAEMKE----QMEKVEADLTRSKSLREKQSKEF 647
Cdd:pfam15921 565 EILRQQIENMTQLVgqhgrTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDakirELEARVSDLELEKVKLVNAGSER 644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 648 LWQLEDIRQRYEQQIVELKlEHEQEKTHLLQQHNAEKDSLvRDHEREIE----NLEKQLRAANMEHENQIQEFKKRDA-- 721
Cdd:pfam15921 645 LRAVKDIKQERDQLLNEVK-TSRNELNSLSEDYEVLKRNF-RNKSEEMEtttnKLKMQLKSAQSELEQTRNTLKSMEGsd 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 722 ----QVIADMEAQVHKLREELINVnsQRKQQLVELGLLREEEKQRATREHEivvNKLKAESEKMKIElKKTHAAETEMtL 797
Cdd:pfam15921 723 ghamKVAMGMQKQITAKRGQIDAL--QSKIQFLEEAMTNANKEKHFLKEEK---NKLSQELSTVATE-KNKMAGELEV-L 795
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 2462553644 798 EKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQL 841
Cdd:pfam15921 796 RSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKL 839
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
308-901 |
5.31e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.89 E-value: 5.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 308 ETEETIRKLEKKVQTLIRDCQ----VIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKfdlQKQHTENIQ 383
Cdd:TIGR01612 1023 EKEKATNDIEQKIEDANKNIPnieiAIHTSIYNIIDEIEKEIGKNIELLNKEILEEAEINITNFNEIK---EKLKHYNFD 1099
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 384 ELLEDTNVR----LNKMESEYMAQTQSTNHMIKELEarvqQLTGEAENSnLQRQKLIQEKAELERCYQITCSELQEVKAR 459
Cdd:TIGR01612 1100 DFGKEENIKyadeINKIKDDIKNLDQKIDHHIKALE----EIKKKSENY-IDEIKAQINDLEDVADKAISNDDPEEIEKK 1174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 460 RNTLHKEKDHLVNDYEQNMKLLQ--TKYDADINLLKQEHALSAS------------------KASSMIEELEQNVCQLKQ 519
Cdd:TIGR01612 1175 IENIVTKIDKKKNIYDEIKKLLNeiAEIEKDKTSLEEVKGINLSygknlgklflekideekkKSEHMIKAMEAYIEDLDE 1254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 520 QLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQR--LQA 597
Cdd:TIGR01612 1255 IKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDINDIKKELQKnlLDA 1334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 598 QQADAALEEFKRQV-------ELNS-EKVYAEMKEQMEKVE-------ADLTRSKSLREKQSKEFlwQLEDIRQRYE--- 659
Cdd:TIGR01612 1335 QKHNSDINLYLNEIaniynilKLNKiKKIIDEVKEYTKEIEennknikDELDKSEKLIKKIKDDI--NLEECKSKIEstl 1412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 660 --QQIVELKLEHEQEKTHLLQQHnAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREE 737
Cdd:TIGR01612 1413 ddKDIDECIKKIKELKNHILSEE-SNIDTYFKNADENNENVLLLFKNIEMADNKSQHILKIKKDNATNDHDFNINELKEH 1491
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 738 LINVN------SQRKQQLVELGLLREEEKQRATR--------EHEIVVNKLKAESEKMKIELKKTHAAETeMTLEKANSK 803
Cdd:TIGR01612 1492 IDKSKgckdeaDKNAKAIEKNKELFEQYKKDVTEllnkysalAIKNKFAKTKKDSEIIIKEIKDAHKKFI-LEAEKSEQK 1570
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 804 LKQIEKEY------TQKLAKSSQIIAELQTTISSLkEENSQQQLAAERRLQDVRQKFEDEKKQL-----------IRDND 866
Cdd:TIGR01612 1571 IKEIKKEKfrieddAAKNDKSNKAAIDIQLSLENF-ENKFLKISDIKKKINDCLKETESIEKKIssfsidsqdteLKENG 1649
|
650 660 670
....*....|....*....|....*....|....*.
gi 2462553644 867 QAIKVLQDELENRSNQVRCAE-KKLQHKELESQEQS 901
Cdd:TIGR01612 1650 DNLNSLQEFLESLKDQKKNIEdKKKELDELDSEIEK 1685
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
251-470 |
7.15e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.08 E-value: 7.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 251 SRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQK----ILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTL--- 323
Cdd:PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKkngeNIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIedp 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 324 ------IRDCQVIRETKEDQIAELKK------ICEQSTESLNNDWEKklhnaVAEMEQEKFDLQKQHteniqELLEDTNV 391
Cdd:PHA02562 254 saalnkLNTAAAKIKSKIEQFQKVIKmyekggVCPTCTQQISEGPDR-----ITKIKDKLKELQHSL-----EKLDTAID 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 392 RLNKMESEYMAQTQSTNHMIKELEARVQQLTGEaENSNLQRQKLIQE--------KAELERCYQitcsELQEVKARRNTL 463
Cdd:PHA02562 324 ELEEIMDEFNEQSKKLLELKNKISTNKQSLITL-VDKAKKVKAAIEElqaefvdnAEELAKLQD----ELDKIVKTKSEL 398
|
....*..
gi 2462553644 464 HKEKDHL 470
Cdd:PHA02562 399 VKEKYHR 405
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
281-675 |
9.67e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 9.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 281 DADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEqsteslnndwekKL 360
Cdd:TIGR00606 686 VFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRN------------KL 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 361 HNAVAEMEQEKFDLQKQHTE-----NIQELLEDTNVRLNKMESEYMaQTQSTNHMIKELEAR---------VQQLTGEAE 426
Cdd:TIGR00606 754 QKVNRDIQRLKNDIEEQETLlgtimPEEESAKVCLTDVTIMERFQM-ELKDVERKIAQQAAKlqgsdldrtVQQVNQEKQ 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 427 NSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLlkQEHALSASKASSM 506
Cdd:TIGR00606 833 EKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEV--QSLIREIKDAKEQ 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 507 IEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKaHDLQSELDKGKEDTQKK----IHKFEEALKEK 582
Cdd:TIGR00606 911 DSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM-KDIENKIQDGKDDYLKQketeLNTVNAQLEEC 989
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 583 EEQLTRVTEVQRLQAQQADAA-LEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLE---DIRQRY 658
Cdd:TIGR00606 990 EKHQEKINEDMRLMRQDIDTQkIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEeniDLIKRN 1069
|
410
....*....|....*..
gi 2462553644 659 EQQIVELKLEHEQEKTH 675
Cdd:TIGR00606 1070 HVLALGRQKGYEKEIKH 1086
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
398-810 |
9.90e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.14 E-value: 9.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 398 SEYMAQTQSTNHMIKELEArvqqltgEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLhkEKDHLVNDYEQN 477
Cdd:COG5022 806 LGSRKEYRSYLACIIKLQK-------TIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLL--KKETIYLQSAQR 876
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 478 MKLLQTKYDAdinllKQEHALSASKASSMIEELEQNVCQLKQQLQESELQrkqqlrdqENKFQMEKS-HLKHIYEKKAHD 556
Cdd:COG5022 877 VELAERQLQE-----LKIDVKSISSLKLVNLELESEIIELKKSLSSDLIE--------NLEFKTELIaRLKKLLNNIDLE 943
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 557 LQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKV-----YAEMKEQMEKVEA 631
Cdd:COG5022 944 EGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSkqygaLQESTKQLKELPV 1023
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 632 DLTRSKSL--REKQSKEFLWQLEDIR----------QRYEQQIVELKLEHEQEKTHLLQQHNAEKdslVRDHEREIEnlE 699
Cdd:COG5022 1024 EVAELQSAskIISSESTELSILKPLQklkgllllenNQLQARYKALKLRRENSLLDDKQLYQLES---TENLLKTIN--V 1098
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 700 KQLRAANMEHENQIQEFKKRDAQVIA-DMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAES 778
Cdd:COG5022 1099 KDLEVTNRNLVKPANVLQFIVAQMIKlNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALS 1178
|
410 420 430
....*....|....*....|....*....|..
gi 2462553644 779 EKmkielKKTHAAETEMTLEKANSKLKQIEKE 810
Cdd:COG5022 1179 EK-----RLYQSALYDEKSKLSSSEVNDLKNE 1205
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
507-738 |
1.20e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 507 IEELEQNVCQLKQQLQ-----ESELQRKQQLRDQENKFQMEKSHLKH-IYEKKAHDLQSELDKGKEDTQKKIHKFEEALK 580
Cdd:COG4913 237 LERAHEALEDAREQIEllepiRELAERYAAARERLAELEYLRAALRLwFAQRRLELLEAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 581 EKEEQLTRVTEVQRLQAQQADAALEEFKRQVElnsekvyaemkeqmekveaDLTRSKSLREKQSKEFLWQLEDIRQRYEQ 660
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRLEQLEREIE-------------------RLERELEERERRRARLEALLAALGLPLPA 377
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462553644 661 QIVELKLEHEQEKtHLLQQHNAEKDSLvRDHEREIENLEKQLRAANMEHENQIQEFKKRDaqviADMEAQVHKLREEL 738
Cdd:COG4913 378 SAEEFAALRAEAA-ALLEALEEELEAL-EEALAEAEAALRDLRRELRELEAEIASLERRK----SNIPARLLALRDAL 449
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
399-767 |
1.24e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.65 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 399 EYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNM 478
Cdd:pfam02463 167 LKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 479 KLLQTKYDADINLLKQEHALSASKASSMIEELEQnvcqlkQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQ 558
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKE------KKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 559 SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKS 638
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 639 LREKQSKEFLWQLEDiRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKK 718
Cdd:pfam02463 401 SEEEKEAQLLLELAR-QLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQL 479
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 2462553644 719 RDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREH 767
Cdd:pfam02463 480 VKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAH 528
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
250-902 |
1.26e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 250 LSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQV 329
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 330 iretkEDQIAELKKIcEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQElLEDTNVRLNKMESEYMAQTQSTNH 409
Cdd:TIGR00606 268 -----DNEIKALKSR-KKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVRE-KERELVDCQRELEKLNKERRLLNQ 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 410 MIKELEARVQQLTGEAENSN---LQRQKLIQEKA---ELERCYQITCSELQ------EVKARRNTLHKEKDHLVNDYEQN 477
Cdd:TIGR00606 341 EKTELLVEQGRLQLQADRHQehiRARDSLIQSLAtrlELDGFERGPFSERQiknfhtLVIERQEDEAKTAAQLCADLQSK 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 478 MKLLQ---TKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESE--LQRKQQLRDQENKF-QMEKSHLKHIYE 551
Cdd:TIGR00606 421 ERLKQeqaDEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDriLELDQELRKAERELsKAEKNSLTETLK 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 552 KKAHDLQSEldkgKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFK----RQVELNSEKVYAEMKEQME 627
Cdd:TIGR00606 501 KEVKSLQNE----KADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKiksrHSDELTSLLGYFPNKKQLE 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 628 KVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHllqQHNAEKDSLVRDHEREIENLEKQLRAANM 707
Cdd:TIGR00606 577 DWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSY---EDKLFDVCGSQDEESDLERLKEEIEKSSK 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 708 EHE---------NQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVEL-GLLREEEKQRATREHEIVVNKLKAE 777
Cdd:TIGR00606 654 QRAmlagatavySQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLApDKLKSTESELKKKEKRRDEMLGLAP 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 778 SEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAErrLQDVRQKFEDE 857
Cdd:TIGR00606 734 GRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQME--LKDVERKIAQQ 811
|
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 2462553644 858 KKQLIR-DNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQSR 902
Cdd:TIGR00606 812 AAKLQGsDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQE 857
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
567-716 |
1.45e-03 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 42.17 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 567 DTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAAL--EEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQs 644
Cdd:COG2268 211 ETEIAIAQANREAEEAELEQEREIETARIAEAEAELAKkkAEERREAETARAEAEAAYEIAEANAEREVQRQLEIAERE- 289
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462553644 645 KEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEF 716
Cdd:COG2268 290 REIELQEKEAEREEAELEADVRKPAEAEKQAAEAEAEAEAEAIRAKGLAEAEGKRALAEAWNKLGDAAILLM 361
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
559-892 |
1.91e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.27 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 559 SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKS 638
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 639 LREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKthllQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKK 718
Cdd:pfam02463 245 LLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEK----EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 719 RDAQVIADMEAQVHKLREELINV--NSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMT 796
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELEKElkELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 797 LEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQL-IRDNDQAIKVLQDE 875
Cdd:pfam02463 401 SEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELeLKKSEDLLKETQLV 480
|
330
....*....|....*..
gi 2462553644 876 LENRSNQVRCAEKKLQH 892
Cdd:pfam02463 481 KLQEQLELLLSRQKLEE 497
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
260-898 |
2.16e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 260 MKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLY------RSKQHETEETIRKLEKKvqtlirdcQVIRET 333
Cdd:TIGR00606 212 LKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLkeiehnLSKIMKLDNEIKALKSR--------KKQMEK 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 334 KEDQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQE--LLEDTNVRLNKMESEYMAQTQSTNHMI 411
Cdd:TIGR00606 284 DNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKErrLLNQEKTELLVEQGRLQLQADRHQEHI 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 412 KELEARVQQLTGEAENSNLQRQKLIQEKAElercyqitcSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQ---TKYDAD 488
Cdd:TIGR00606 364 RARDSLIQSLATRLELDGFERGPFSERQIK---------NFHTLVIERQEDEAKTAAQLCADLQSKERLKQeqaDEIRDE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 489 INLLKQEHALSASKASSMIEELEQNVCQLKQQLQESE--LQRKQQLRDQENKF-QMEKSHLKHIYEKKAHDLQSEldkgK 565
Cdd:TIGR00606 435 KKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDriLELDQELRKAERELsKAEKNSLTETLKKEVKSLQNE----K 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 566 EDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQ----VELNSEKVYAEMKEQMEKVEADLTRSKSLRE 641
Cdd:TIGR00606 511 ADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKsrhsDELTSLLGYFPNKKQLEDWLHSKSKEINQTR 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 642 KQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHllqQHNAEKDSLVRDHEREIENLEKQLRAAN--------------- 706
Cdd:TIGR00606 591 DRLAKLNKELASLEQNKNHINNELESKEEQLSSY---EDKLFDVCGSQDEESDLERLKEEIEKSSkqramlagatavysq 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 707 -------------------MEHENQIQEFKKrDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREH 767
Cdd:TIGR00606 668 fitqltdenqsccpvcqrvFQTEAELQEFIS-DLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEI 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 768 EIVVNKLKAESEKMKIELKKTHAAETEM------------------TLEKANSKLKQIEKEYTQKLAKSSQIiaELQTTI 829
Cdd:TIGR00606 747 PELRNKLQKVNRDIQRLKNDIEEQETLLgtimpeeesakvcltdvtIMERFQMELKDVERKIAQQAAKLQGS--DLDRTV 824
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 830 SSLKEENSQQQlaaeRRLQDVRQKFEDEKKqLIRDNDQAIKVLQDEL-ENRSNQVRCAEKKLQHKELESQ 898
Cdd:TIGR00606 825 QQVNQEKQEKQ----HELDTVVSKIELNRK-LIQDQQEQIQHLKSKTnELKSEKLQIGTNLQRRQQFEEQ 889
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
509-784 |
2.33e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 2.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 509 ELEQNVCQLkQQLQESELQRKQQLrDQENKFQMEKSHLK-HIYEKKAHDLQSELDKGKEDtQKKIHKFEEALKEKEEQLT 587
Cdd:COG3096 851 ELAQHRAQE-QQLRQQLDQLKEQL-QLLNKLLPQANLLAdETLADRLEELREELDAAQEA-QAFIQQHGKALAQLEPLVA 927
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 588 RV----TEVQRLQA--QQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQsKEFLWQLEDIRQRYEQQ 661
Cdd:COG3096 928 VLqsdpEQFEQLQAdyLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDAVGLLGENSDLNEKL-RARLEQAEEARREAREQ 1006
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 662 ivelkLEHEQEKthlLQQHNAEKDSLVRDHereienlekqlRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREEL--- 738
Cdd:COG3096 1007 -----LRQAQAQ---YSQYNQVLASLKSSR-----------DAKQQTLQELEQELEELGVQADAEAEERARIRRDELhee 1067
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 2462553644 739 INVNSQRKQQLvelgllreeEKQRATREHEI--VVNKLKAESEKMKIE 784
Cdd:COG3096 1068 LSQNRSRRSQL---------EKQLTRCEAEMdsLQKRLRKAERDYKQE 1106
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
386-756 |
2.54e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 386 LEDTNVRLNKME---SEYMAQTQSTNHMIKELEARVQQLTGEAENSN-LQRQKLIQEKAELErcyqitcSELQEVkarrn 461
Cdd:PRK04863 839 LRQLNRRRVELEralADHESQEQQQRSQLEQAKEGLSALNRLLPRLNlLADETLADRVEEIR-------EQLDEA----- 906
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 462 tlhkekdhlvndyEQNMKLLQtKYDADINLLKQEHALsaskassmIEELEQNVCQLKQQLQESELQRKQQlrdqenkfQM 541
Cdd:PRK04863 907 -------------EEAKRFVQ-QHGNALAQLEPIVSV--------LQSDPEQFEQLKQDYQQAQQTQRDA--------KQ 956
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 542 EKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRvtevQRLQAQQADAALEEFKrqvelnsekvyae 621
Cdd:PRK04863 957 QAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTR----AREQLRQAQAQLAQYN------------- 1019
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 622 mkeqmeKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDH---EREIENL 698
Cdd:PRK04863 1020 ------QVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLtfcEAEMDNL 1093
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462553644 699 EKQLRAANMEH---ENQIQEFKKRDAQVI-----ADMEAQVHklREELINVNSQ--RKQQLVELGLLR 756
Cdd:PRK04863 1094 TKKLRKLERDYhemREQVVNAKAGWCAVLrlvkdNGVERRLH--RRELAYLSADelRSMSDKALGALR 1159
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
593-748 |
2.58e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.23 E-value: 2.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 593 QRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKV-EADLTRSKSLREKQSKEFlwqlEDIRQRYEQqivelkLEHEQ 671
Cdd:PRK12705 28 RQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRErNQQRQEARREREELQREE----ERLVQKEEQ------LDARA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 672 EKTHLLQQHNAEKDSLVRDHEREIENLEKQL-----RAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRK 746
Cdd:PRK12705 98 EKLDNLENQLEEREKALSARELELEELEKQLdnelyRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERK 177
|
..
gi 2462553644 747 QQ 748
Cdd:PRK12705 178 AQ 179
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
650-799 |
2.62e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 650 QLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHERE-------IENLEKQLRAANMEHENQIQEFKKRDAQ 722
Cdd:PRK12704 32 KIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKElrerrneLQKLEKRLLQKEENLDRKLELLEKREEE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 723 V------IADMEAQVHKLREELINVNSQRKQQLVEL-GLLREEEKQratreheIVVNKLKAESEKMKIELKKTHAAETEM 795
Cdd:PRK12704 112 LekkekeLEQKQQELEKKEEELEELIEEQLQELERIsGLTAEEAKE-------ILLEKVEEEARHEAAVLIKEIEEEAKE 184
|
....
gi 2462553644 796 TLEK 799
Cdd:PRK12704 185 EADK 188
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
502-861 |
2.63e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 502 KASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKE 581
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 582 KEEQLTRVTEVQRLQAQQADA--ALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEflwqLEDIRQRYE 659
Cdd:COG4717 155 LEELRELEEELEELEAELAELqeELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEE----LEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 660 QQIVELKLEHEQEK----------------------------------------------------THLLQQHNAEKDSL 687
Cdd:COG4717 231 QLENELEAAALEERlkearlllliaaallallglggsllsliltiagvlflvlgllallflllareKASLGKEAEELQAL 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 688 VRDHEREIENLEKQLRAANMEHENQIQEFKK--RDAQVIADMEAQVHKLREEL-INVNSQRKQQLVELG----------- 753
Cdd:COG4717 311 PALEELEEEELEELLAALGLPPDLSPEELLEllDRIEELQELLREAEELEEELqLEELEQEIAALLAEAgvedeeelraa 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 754 LLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELqttisslk 833
Cdd:COG4717 391 LEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAEL-------- 462
|
410 420
....*....|....*....|....*...
gi 2462553644 834 eensqQQLAAERRLQDVRQKFEDEKKQL 861
Cdd:COG4717 463 -----EQLEEDGELAELLQELEELKAEL 485
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
303-834 |
2.77e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.57 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 303 RSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLN-NDWEKKLHNAVAEMEQEKFDL------Q 375
Cdd:TIGR00606 583 SKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGsQDEESDLERLKEEIEKSSKQRamlagaT 662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 376 KQHTENIQELLEDTNV------RLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQIT 449
Cdd:TIGR00606 663 AVYSQFITQLTDENQSccpvcqRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLK 742
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 450 CSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTkYDADINLLK--QEHALSASKASSMIEELEQNVCQLKQQLQESELQ 527
Cdd:TIGR00606 743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGT-IMPEEESAKvcLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD 821
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 528 RKQQlrdQENKFQMEKSHLKHIYEKKAHDLQseldKGKEDTQKKIHKFEEALKE-KEEQLTRVTEVQRlqAQQADAALEE 606
Cdd:TIGR00606 822 RTVQ---QVNQEKQEKQHELDTVVSKIELNR----KLIQDQQEQIQHLKSKTNElKSEKLQIGTNLQR--RQQFEEQLVE 892
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 607 FKRQVElnseKVYAEMKEQMEKVEADLTRSKSLREKQsKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNA---E 683
Cdd:TIGR00606 893 LSTEVQ----SLIREIKDAKEQDSPLETFLEKDQQEK-EELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKiqdG 967
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 684 KDSLVRDHEREIENLEKQLrAANMEHENQIQEFKKRDAQVIADMEAQ---------VHKLREELINVNSQRKQQLVELGL 754
Cdd:TIGR00606 968 KDDYLKQKETELNTVNAQL-EECEKHQEKINEDMRLMRQDIDTQKIQerwlqdnltLRKRENELKEVEEELKQHLKEMGQ 1046
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 755 LREEEKQRATreheivvNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKE 834
Cdd:TIGR00606 1047 MQVLQMKQEH-------QKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKD 1119
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
252-523 |
2.91e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 252 RIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELktlyRSKQHETEETIRKLEKKVQTLIRDCQVIR 331
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA----EEELAEAEAEIEELEAQIEQLKEELKALR 802
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 332 ETKEDQIAELKkicEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMI 411
Cdd:TIGR02168 803 EALDELRAELT---LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 412 KE---LEARVQQLTGEAENSNLQRQKLIQEKAELERcyqitcsELQEVKARRNTLHKEKDHLvndyEQNMKLLQTKYDAD 488
Cdd:TIGR02168 880 NErasLEEALALLRSELEELSEELRELESKRSELRR-------ELEELREKLAQLELRLEGL----EVRIDNLQERLSEE 948
|
250 260 270
....*....|....*....|....*....|....*
gi 2462553644 489 INLLKQEHALSASKASSMIEELEQNVCQLKQQLQE 523
Cdd:TIGR02168 949 YSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
397-748 |
3.07e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.26 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 397 ESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSEL--QEVKARRNTLHKEKDHLVNDY 474
Cdd:pfam17380 267 ENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKarQAEMDRQAAIYAEQERMAMER 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 475 EQNM-KLLQTKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQL-QESELQRKQQLRDQEN--KFQMEKSHLKHIY 550
Cdd:pfam17380 347 ERELeRIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVrQELEAARKVKILEEERqrKIQQQKVEMEQIR 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 551 EKKAHDLQSELDKGKEDTQKKIHKFeealkeKEEQLTRVTEVQRLQAQQAdaalEEFKRQVELNsekvyaemKEQMEKVE 630
Cdd:pfam17380 427 AEQEEARQREVRRLEEERAREMERV------RLEEQERQQQVERLRQQEE----ERKRKKLELE--------KEKRDRKR 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 631 ADLTRSKSLREkqskeflwQLEDIRQryeqqivelKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHE 710
Cdd:pfam17380 489 AEEQRRKILEK--------ELEERKQ---------AMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER 551
|
330 340 350
....*....|....*....|....*....|....*...
gi 2462553644 711 NQIQEFKKRDAQVIADMEAqVHKLREELINVNSQRKQQ 748
Cdd:pfam17380 552 RRIQEQMRKATEERSRLEA-MEREREMMRQIVESEKAR 588
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
251-862 |
3.62e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 251 SRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETE---ETIRKLEKKVQTLIRDC 327
Cdd:TIGR02169 357 EEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQrlsEELADLNAAIAGIEAKI 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 328 QVIRETKEDQIAELKKIcEQSTESLNNDWEK------KLHNAVAEMEQEKFDLQKQHTEniqelLEDTNVRLNKMESEYM 401
Cdd:TIGR02169 437 NELEEEKEDKALEIKKQ-EWKLEQLAADLSKyeqelyDLKEEYDRVEKELSKLQRELAE-----AEAQARASEERVRGGR 510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 402 AQTQSTNHMIKELEARVQQLTG---------EAENSNLQRQKLIQEKAELERCYQI---------TCSELQEVKARRNTL 463
Cdd:TIGR02169 511 AVEEVLKASIQGVHGTVAQLGSvgeryataiEVAAGNRLNNVVVEDDAVAKEAIELlkrrkagraTFLPLNKMRDERRDL 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 464 HKEKDHLVNDYEQNMKLLQTKYDA-------------DINLLKQ---------------EHALSASKASSMIEELEQNVC 515
Cdd:TIGR02169 591 SILSEDGVIGFAVDLVEFDPKYEPafkyvfgdtlvveDIEAARRlmgkyrmvtlegelfEKSGAMTGGSRAPRGGILFSR 670
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 516 QLKQQLQESElQRKQQLRDQENKFQMEKSHLkhiyEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRL 595
Cdd:TIGR02169 671 SEPAELQRLR-ERLEGLKRELSSLQSELRRI----ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEED 745
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 596 QAQQADAALEEFKRQVELNSEKVY-----AEMKEQMEKVEADLTRSkslREKQSKEFLWQLEDIRQRYEQQIVEL--KLE 668
Cdd:TIGR02169 746 LSSLEQEIENVKSELKELEARIEEleedlHKLEEALNDLEARLSHS---RIPEIQAELSKLEEEVSRIEARLREIeqKLN 822
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 669 HEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAanmehenqIQEFKKRDAQVIADMEAQVHKLREELINVNSQRkqq 748
Cdd:TIGR02169 823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN--------LNGKKEELEEELEELEAALRDLESRLGDLKKER--- 891
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 749 lvelgllreEEKQRATREHEIVVNKLKAEsekmkIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQI------- 821
Cdd:TIGR02169 892 ---------DELEAQLRELERKIEELEAQ-----IEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEElsledvq 957
|
650 660 670 680
....*....|....*....|....*....|....*....|....*....
gi 2462553644 822 --IAELQTTISSLKEENS---QQQLAAERR---LQDVRQKFEDEKKQLI 862
Cdd:TIGR02169 958 aeLQRVEEEIRALEPVNMlaiQEYEEVLKRldeLKEKRAKLEEERKAIL 1006
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
563-784 |
4.24e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.04 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 563 KGKEDTQKKIHKFEEALKEKEEQLTRVTEVQrLQAQQADAALEEFKRqvELNSEKVYAEMKEQMEKVEADLTRSKSLREK 642
Cdd:PLN02939 163 TEKEALQGKINILEMRLSETDARIKLAAQEK-IHVEILEEQLEKLRN--ELLIRGATEGLCVHSLSKELDVLKEENMLLK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 643 QSKEFLWQLEDIRQRYEQQIVELKLEH--------EQEKTHLLQQHNAEK-DSLVRDHERE-IENLEKQLRAANMEHEN- 711
Cdd:PLN02939 240 DDIQFLKAELIEVAETEERVFKLEKERslldaslrELESKFIVAQEDVSKlSPLQYDCWWEkVENLQDLLDRATNQVEKa 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 712 -----QIQEFKKRDAQVIADM-EAQVHKLREELINVnSQRKQQLVELGLLREEEK--------QRATREHEIVVNKLKAE 777
Cdd:PLN02939 320 alvldQNQDLRDKVDKLEASLkEANVSKFSSYKVEL-LQQKLKLLEERLQASDHEihsyiqlyQESIKEFQDTLSKLKEE 398
|
....*..
gi 2462553644 778 SEKMKIE 784
Cdd:PLN02939 399 SKKRSLE 405
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
600-894 |
4.60e-03 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 40.77 E-value: 4.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 600 ADAALEEFKRQVELNSEKVYAEMKEQMEKVeadltrskslREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKT----- 674
Cdd:NF033838 52 GNESQKEHAKEVESHLEKILSEIQKSLDKR----------KHTQNVALNKKLSDIKTEYLYELNVLKEKSEAELTsktkk 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 675 ------HLLQQHNAEKDSLVRDHEREIENLEKQLRAANME-HENQIQEFKKRDAQVIADMEAQVHKLREELINVN---SQ 744
Cdd:NF033838 122 eldaafEQFKKDTLEPGKKVAEATKKVEEAEKKAKDQKEEdRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEakePR 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 745 RKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEK----------EYTQK 814
Cdd:NF033838 202 DEEKIKQAKAKVESKKAEATRLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKrgvlgepatpDKKEN 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 815 LAKSSQIIAELQTTIS-SLKEEnsQQQLAAERRLQDVRQKFEDEKKQLIRD-NDQAIKVLQDELENRSNQVRCAEKKLQH 892
Cdd:NF033838 282 DAKSSDSSVGEETLPSpSLKPE--KKVAEAEKKVEEAKKKAKDQKEEDRRNyPTNTYKTLELEIAESDVKVKEAELELVK 359
|
..
gi 2462553644 893 KE 894
Cdd:NF033838 360 EE 361
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
328-900 |
4.91e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.93 E-value: 4.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 328 QVIRETKEDQIAELKKICEQST---ESLNNDWEKKLHNAVAEMEQ--EKFDLQKQHTENIQELLEDTNVRLNKMESEYMA 402
Cdd:pfam01576 319 QELRSKREQEVTELKKALEEETrshEAQLQEMRQKHTQALEELTEqlEQAKRNKANLEKAKQALESENAELQAELRTLQQ 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 403 QTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQ 482
Cdd:pfam01576 399 AKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQ 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 483 TKYDADINLLKQEHALSASKASSM---------IEELEQNVCQLKQQLQES--------------ELQRKQQLRDQENKF 539
Cdd:pfam01576 479 EETRQKLNLSTRLRQLEDERNSLQeqleeeeeaKRNVERQLSTLQAQLSDMkkkleedagtlealEEGKKRLQRELEALT 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 540 QM--EKSHLKHIYEKKAHDLQSELDKGKEDTQ----------KKIHKFEEALKE-------------KEEQLTRVTEVQR 594
Cdd:pfam01576 559 QQleEKAAAYDKLEKTKNRLQQELDDLLVDLDhqrqlvsnleKKQKKFDQMLAEekaisaryaeerdRAEAEAREKETRA 638
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 595 LQAQQADAALEEFKRQVELNSEKVYAEM------KEQMEKVEADLTRSKSLREKQSKEFLWQL----------EDIRQRY 658
Cdd:pfam01576 639 LSLARALEEALEAKEELERTNKQLRAEMedlvssKDDVGKNVHELERSKRALEQQVEEMKTQLeeledelqatEDAKLRL 718
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 659 EQQIVELKLEHEQEKTHLLQQHNAEKDSL---VRDHEREIEN---------------------LEKQLRAANMEHENQIQ 714
Cdd:pfam01576 719 EVNMQALKAQFERDLQARDEQGEEKRRQLvkqVRELEAELEDerkqraqavaakkkleldlkeLEAQIDAANKGREEAVK 798
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 715 EFKKrdaqviadMEAQVHKLREELINVNSQRKQQLVelgLLREEEKQRATREHEIVV---NKLKAESEKMKIELKKTHAA 791
Cdd:pfam01576 799 QLKK--------LQAQMKDLQRELEEARASRDEILA---QSKESEKKLKNLEAELLQlqeDLAASERARRQAQQERDELA 867
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 792 ETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKE---------ENSQQQLAAERRLQdvrQKFEDEKKQLI 862
Cdd:pfam01576 868 DEIASGASGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNDrlrkstlqvEQLTTELAAERSTS---QKSESARQQLE 944
|
650 660 670
....*....|....*....|....*....|....*...
gi 2462553644 863 RDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQ 900
Cdd:pfam01576 945 RQNKELKAKLQEMEGTVKSKFKSSIAALEAKIAQLEEQ 982
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
604-812 |
4.98e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 4.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 604 LEEFKRQVELNSEKVYAEMKEQMEKVEadltrskslrekqskeflwQLEDIRQRYEQQIVELK--------LEHEQEKTH 675
Cdd:PRK05771 84 LEELIKDVEEELEKIEKEIKELEEEIS-------------------ELENEIKELEQEIERLEpwgnfdldLSLLLGFKY 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 676 LlqqhnaekdsLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELiNVNSQRKQQLVELGLL 755
Cdd:PRK05771 145 V----------SVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEEL-KKLGFERLELEEEGTP 213
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462553644 756 RE------EEKQRATREHEIVVNKLKAESEKMKIELKKTHaAETEMTLEKANSKLKQIEKEYT 812
Cdd:PRK05771 214 SElireikEELEEIEKERESLLEELKELAKKYLEELLALY-EYLEIELERAEALSKFLKTDKT 275
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
502-863 |
5.51e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 40.22 E-value: 5.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 502 KASSMIEELEQNVCQLKQQLQESeLQRKQQLRDQENKFQMEKSHLKHIYEKkahdLQSELdkgkedtQKKIHKFEEALKE 581
Cdd:pfam06160 83 KAKKALDEIEELLDDIEEDIKQI-LEELDELLESEEKNREEVEELKDKYRE----LRKTL-------LANRFSYGPAIDE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 582 KEEQLtrvtevqrlqaqqaDAALEEFKRQVELNSE-------KVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDI 654
Cdd:pfam06160 151 LEKQL--------------AEIEEEFSQFEELTESgdylearEVLEKLEEETDALEELMEDIPPLYEELKTELPDQLEEL 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 655 RQRYEQQivelkleheQEKTHLLQQHNAEKDslVRDHEREIENLEKQLRAANMEH-ENQIQEFKKRDAQVIADMEA---- 729
Cdd:pfam06160 217 KEGYREM---------EEEGYALEHLNVDKE--IQQLEEQLEENLALLENLELDEaEEALEEIEERIDQLYDLLEKevda 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 730 --QVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEivvnklkaesekmkiELKKTHAAETEmtLEKANSKLKQI 807
Cdd:pfam06160 286 kkYVEKNLPEIEDYLEHAEEQNKELKEELERVQQSYTLNEN---------------ELERVRGLEKQ--LEELEKRYDEI 348
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462553644 808 EKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAErRLQDVRQKFEDEKKQLIR 863
Cdd:pfam06160 349 VERLEEKEVAYSELQEELEEILEQLEEIEEEQEEFKE-SLQSLRKDELEAREKLDE 403
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
370-705 |
5.68e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 5.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 370 EKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERcyqit 449
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEE----- 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 450 csELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQE-HALSA--SKASSMIEELEQNVCQLKQQLQESEL 526
Cdd:TIGR02169 252 --ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKiGELEAeiASLERSIAEKERELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 527 QRKQQLRDQEN-------------KFQMEKSHLKHIYEKKAHDLQSELDKGKE--DTQKKIHKFEEALKEKEEQLTRVTE 591
Cdd:TIGR02169 330 EIDKLLAEIEElereieeerkrrdKLTEEYAELKEELEDLRAELEEVDKEFAEtrDELKDYREKLEKLKREINELKRELD 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 592 VQRLQAQQADAALEEFKRQVELNSEKVY---AEMKEQMEKVEADLTRSKSLREKQSKEfLWQLEDIRQRYEqqivelKLE 668
Cdd:TIGR02169 410 RLQEELQRLSEELADLNAAIAGIEAKINeleEEKEDKALEIKKQEWKLEQLAADLSKY-EQELYDLKEEYD------RVE 482
|
330 340 350
....*....|....*....|....*....|....*..
gi 2462553644 669 HEQEKThllqqhnaekdslvrdhEREIENLEKQLRAA 705
Cdd:TIGR02169 483 KELSKL-----------------QRELAEAEAQARAS 502
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
648-902 |
5.81e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 5.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 648 LWQLEDIRQRYEQQIVELKleheqEKTHLLQQHNAEKDSLVRDH-EREIENLEKQLRAANmehenQIQEFKKRDAQVIAD 726
Cdd:PRK04863 853 LADHESQEQQQRSQLEQAK-----EGLSALNRLLPRLNLLADETlADRVEEIREQLDEAE-----EAKRFVQQHGNALAQ 922
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 727 MEAQVHKLREELINvNSQRKQQLVELGLLREEEKQRA--------TREH---EIVVNKLKAESEkMKIELKKTHAaETEM 795
Cdd:PRK04863 923 LEPIVSVLQSDPEQ-FEQLKQDYQQAQQTQRDAKQQAfaltevvqRRAHfsyEDAAEMLAKNSD-LNEKLRQRLE-QAEQ 999
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 796 TLEKANSKLKQIEKEYTQKlaksSQIIAELQTTISSLKeensQQQLAAERRLQD--VRQKFEDEKKQLIRdndqaikvlQ 873
Cdd:PRK04863 1000 ERTRAREQLRQAQAQLAQY----NQVLASLKSSYDAKR----QMLQELKQELQDlgVPADSGAEERARAR---------R 1062
|
250 260 270
....*....|....*....|....*....|...
gi 2462553644 874 DELEN--RSNQVRCA--EKKLQHKELESQEQSR 902
Cdd:PRK04863 1063 DELHArlSANRSRRNqlEKQLTFCEAEMDNLTK 1095
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
262-870 |
5.84e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.81 E-value: 5.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 262 TKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEE----LKTLYRSKQH-----ETEETIRKLEKKV----QTLIRDCQ 328
Cdd:TIGR01612 873 TNKIKAEISDDKLNDYEKKFNDSKSLINEINKSIEEeyqnINTLKKVDEYikiceNTKESIEKFHNKQnilkEILNKNID 952
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 329 VIRETKE--------------DQIAELKKICEQ----STESLNNDWEKKLHNAVAEMEQEK-------FDLQKQHTENIQ 383
Cdd:TIGR01612 953 TIKESNLieksykdkfdntliDKINELDKAFKDaslnDYEAKNNELIKYFNDLKANLGKNKenmlyhqFDEKEKATNDIE 1032
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 384 ELLEDTNVRLNKME-----SEYMAQTQSTNHMIKELEARVQQLTGEAeNSNLQRQKLIQEKAELERCYQIT-------CS 451
Cdd:TIGR01612 1033 QKIEDANKNIPNIEiaihtSIYNIIDEIEKEIGKNIELLNKEILEEA-EINITNFNEIKEKLKHYNFDDFGkeenikyAD 1111
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 452 ELQEVKARRNTLHKEKDHLVNDYEQnmklLQTKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQ 531
Cdd:TIGR01612 1112 EINKIKDDIKNLDQKIDHHIKALEE----IKKKSENYIDEIKAQINDLEDVADKAISNDDPEEIEKKIENIVTKIDKKKN 1187
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 532 LRDQENKFQMEKSHL----------KHIYEKKAHDLQS----ELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQA 597
Cdd:TIGR01612 1188 IYDEIKKLLNEIAEIekdktsleevKGINLSYGKNLGKlfleKIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMG 1267
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 598 QQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLtRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHL- 676
Cdd:TIGR01612 1268 IEMDIKAEMETFNISHDDDKDHHIISKKHDENISDI-REKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDINLYLn 1346
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 677 --------LQQHNAEK-DSLVRDHEREIENLEKQLRAANMEHENQIQEFKKR-------------------DAQVIADME 728
Cdd:TIGR01612 1347 eianiyniLKLNKIKKiIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDinleeckskiestlddkdiDECIKKIKE 1426
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 729 AQVHKLREELIN----VNSQRKQQLVELGL------------LREEEKQRATREHEIVVNKLKAESEKMKieLKKTHAAE 792
Cdd:TIGR01612 1427 LKNHILSEESNIdtyfKNADENNENVLLLFkniemadnksqhILKIKKDNATNDHDFNINELKEHIDKSK--GCKDEADK 1504
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 793 TEMTLEKANSKLKQIEKEYTQKLAKSS---------QIIAELQTTISSLKEENSQQQLAAERRlqdvRQKFEDEKKQLIR 863
Cdd:TIGR01612 1505 NAKAIEKNKELFEQYKKDVTELLNKYSalaiknkfaKTKKDSEIIIKEIKDAHKKFILEAEKS----EQKIKEIKKEKFR 1580
|
....*..
gi 2462553644 864 DNDQAIK 870
Cdd:TIGR01612 1581 IEDDAAK 1587
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
254-444 |
6.80e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 6.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 254 REKELDMKTKMMEAKfhEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHE---TEETIRKLEKKVQTLIRDCQVI 330
Cdd:COG4942 25 AEAELEQLQQEIAEL--EKELAALKKEEKALLKQLAALERRIAALARRIRALEQElaaLEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 331 RETKEDQIAELKKICEQSTESL---NNDWEK-----KLHNAVAEMEQEKFDLQKQHTENIQEL---LEDTNVRLNKMESE 399
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALllsPEDFLDavrrlQYLKYLAPARREQAEELRADLAELAALraeLEAERAELEALLAE 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2462553644 400 YMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELER 444
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
621-901 |
7.78e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 39.94 E-value: 7.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 621 EMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLL-QQHNAEKDSLVRDHEREIENLE 699
Cdd:COG5185 180 EIFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKgFQDPESELEDLAQTSDKLEKLV 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 700 KQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELinvnSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESE 779
Cdd:COG5185 260 EQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKI----AEYTKSIDIKKATESLEEQLAAAEAEQELEESKRETE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 780 KMKIELKKTHAAETEMTLEKANSKLKQIE-KEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEK 858
Cdd:COG5185 336 TGIQNLTAEIEQGQESLTENLEAIKEEIEnIVGEVELSKSSEELDSFKDTIESTKESLDEIPQNQRGYAQEILATLEDTL 415
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 2462553644 859 KQLIRDNDQ---AIKVLQDELENRSNQVRCAEKKLQHKELESQEQS 901
Cdd:COG5185 416 KAADRQIEElqrQIEQATSSNEEVSKLLNELISELNKVMREADEES 461
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
316-891 |
8.71e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 39.72 E-value: 8.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 316 LEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESlnndwekklhnavAEMEQEKFDLQKQHTENIQELledtnvrlNK 395
Cdd:pfam05557 32 LEKKASALKRQLDRESDRNQELQKRIRLLEKREAEA-------------EEALREQAELNRLKKKYLEAL--------NK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 396 MESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKeKDHLVNDYE 475
Cdd:pfam05557 91 KLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEK-QQSSLAEAE 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 476 QNMKLLQTKydadinLLKQEHALSASKASSmieeleqnvcqlKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAH 555
Cdd:pfam05557 170 QRIKELEFE------IQSQEQDSEIVKNSK------------SELARIPELEKELERLREHNKHLNENIENKLLLKEEVE 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 556 DLQSELDKgKEDTQKKIHKFE---EALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQveLNSEKVYAEMKEQMEKVEAD 632
Cdd:pfam05557 232 DLKRKLER-EEKYREEAATLElekEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQL--QQREIVLKEENSSLTSSARQ 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 633 LTRSKSLREKQSKEFLWQLEDIRQRYEQQivELKLEHEQEKTHLLQQHNAEKDSLVR--DHEREIENLEKQLRAANMEHE 710
Cdd:pfam05557 309 LEKARRELEQELAQYLKKIEDLNKKLKRH--KALVRRLQRRVLLLTKERDGYRAILEsyDKELTMSNYSPQLLERIEEAE 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 711 NQIQEFKKRDAQviadMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHA 790
Cdd:pfam05557 387 DMTQKMQAHNEE----MEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSKEEVDSLRRKLETLELERQRLRE 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 791 AETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSlkeeNSQQQLAAE-RRLQDVRQKFEDEKKQLIRDNDQAI 869
Cdd:pfam05557 463 QKNELEMELERRCLQGDYDPKKTKVLHLSMNPAAEAYQQRK----NQLEKLQAEiERLKRLLKKLEDDLEQVLRLPETTS 538
|
570 580
....*....|....*....|..
gi 2462553644 870 KVLQDELENRSNQVRCAEKKLQ 891
Cdd:pfam05557 539 TMNFKEVLDLRKELESAELKNQ 560
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
261-815 |
9.53e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 39.70 E-value: 9.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 261 KTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTL--------------YRSKQHETEETIRKLEKKVQTLIRD 326
Cdd:pfam05483 119 RKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLlketcarsaektkkYEYEREETRQVYMDLNNNIEKMILA 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 327 CQVIRETKEDQIAELKKICEQSTESLNNdWEKKLHNAVAEMEQEKFDLQKQHTE------NIQELLEDTNVRLNKMESEY 400
Cdd:pfam05483 199 FEELRVQAENARLEMHFKLKEDHEKIQH-LEEEYKKEINDKEKQVSLLLIQITEkenkmkDLTFLLEESRDKANQLEEKT 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 401 MAQTQStnhmIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKL 480
Cdd:pfam05483 278 KLQDEN----LKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTE 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 481 LQTKYDADINLLKQEHalsaskassmiEELEQNVCQLKqqLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSE 560
Cdd:pfam05483 354 FEATTCSLEELLRTEQ-----------QRLEKNEDQLK--IITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKL 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 561 LDKgkedtQKKIHKFEEALKEKEEQLTRVtevqrLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLR 640
Cdd:pfam05483 421 LDE-----KKQFEKIAEELKGKEQELIFL-----LQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIEL 490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 641 EKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKdslvrdherEIENLEKQLRAANMEHENQIQEFKKRD 720
Cdd:pfam05483 491 TAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLK---------QIENLEEKEMNLRDELESVREEFIQKG 561
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553644 721 AQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATR-------EHEIVVNKLKAESEKMKIELKKTHAAET 793
Cdd:pfam05483 562 DEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKnknieelHQENKALKKKGSAENKQLNAYEIKVNKL 641
|
570 580
....*....|....*....|..
gi 2462553644 794 EMTLEKANSKLKQIEKEYTQKL 815
Cdd:pfam05483 642 ELELASAKQKFEEIIDNYQKEI 663
|
|
| |
