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Conserved domains on  [gi|2217494269|ref|XP_047302757|]
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tubulin-specific chaperone D isoform X19 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TFCD_C super family cl19887
Tubulin folding cofactor D C terminal; This domain family is found in eukaryotes, and is ...
63-599 1.55e-23

Tubulin folding cofactor D C terminal; This domain family is found in eukaryotes, and is typically between 182 and 199 amino acids in length. The family is found in association with pfam02985. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerize with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules.


The actual alignment was detected with superfamily member COG5234:

Pssm-ID: 473247  Cd Length: 993  Bit Score: 106.57  E-value: 1.55e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217494269  63 IMDKYQEQPHLLDPHLEWMMNLLLDI-VQDQTSPASLVHLAFKFLyiitKVRGYKTFLRLFPHEVADVEPVLDLVtiqNP 141
Cdd:COG5234    30 YLQFCQFQPTLLDKLLPKYVPNLASYlFKVKGKCNSITAILYQFC----KIRGHKAVRVLLPVGIQYIKELYTLL---ND 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217494269 142 KDHEAWETRYMLLLWLSVTCLIPFDFSRLDGNLltqpgqaRMSIMDRILQIAESYLIVSDKARDAAAVLVSRFITRPDVK 221
Cdd:COG5234   103 RSNSPWSFHYIVLLYLSQALNTPFPLNSLADKL-------DVKKTIYAIKYLENSPIDIEASNLVLSRLFFRDDALDLLL 175
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217494269 222 QSKMAEFLdWSLCNLARSSFQTMQgvitmdgtlqaLAQIFKHGKredclpyaatvlrcldgcrlpesNQTLLRKLGVKLV 301
Cdd:COG5234   176 KRSIFYCL-FSLSQFLKICLQSVE-----------VAQFYLVGQ-----------------------ENSALRKLLCKCL 220
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217494269 302 QRLGLTFLkPKvaawryqrgcrslaanlqLLTQGQSEQKPLILtedddedddvpegvERVIEQLLVGLKDKDTVVRWSAA 381
Cdd:COG5234   221 SRLGIVLL-PV------------------NLPIDSNEESHIYL--------------EVIVDFLLSSVSSIDSFVRFSAA 267
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217494269 382 KGIGRMAGRLPRALADDVVG-----------SVLD--CFSFQETDKAWHGgclALAELGRRGLLlPSRLVD--VVAVILK 446
Cdd:COG5234   268 KGLAKIISRLPWNLAESFIDiielmtenmflSPLEntCDIIITNELVWHG---AILFFALAGAG-LIDYSDclILPIIEK 343
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217494269 447 ALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIAAVFDRDINCRRAASAAFQENVGRQGTFPH 526
Cdd:COG5234   344 GLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVIGRHASIAD 423
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217494269 527 GIDILTTADYFAVGNRSNCFLVISVFIAGFPEYT--QPMIDHLVTMKISHWDGVIRELAARALHNLAQQAPEFSA 599
Cdd:COG5234   424 GLSLISLINYVSVTRISNCSGDLCRKVAHFPKFRscEDVFQDILLTNLQHWDVKVKQLSAYSLRQLIKYPKELPI 498
 
Name Accession Description Interval E-value
CIN1 COG5234
Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones ...
63-599 1.55e-23

Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton];


Pssm-ID: 227559  Cd Length: 993  Bit Score: 106.57  E-value: 1.55e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217494269  63 IMDKYQEQPHLLDPHLEWMMNLLLDI-VQDQTSPASLVHLAFKFLyiitKVRGYKTFLRLFPHEVADVEPVLDLVtiqNP 141
Cdd:COG5234    30 YLQFCQFQPTLLDKLLPKYVPNLASYlFKVKGKCNSITAILYQFC----KIRGHKAVRVLLPVGIQYIKELYTLL---ND 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217494269 142 KDHEAWETRYMLLLWLSVTCLIPFDFSRLDGNLltqpgqaRMSIMDRILQIAESYLIVSDKARDAAAVLVSRFITRPDVK 221
Cdd:COG5234   103 RSNSPWSFHYIVLLYLSQALNTPFPLNSLADKL-------DVKKTIYAIKYLENSPIDIEASNLVLSRLFFRDDALDLLL 175
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217494269 222 QSKMAEFLdWSLCNLARSSFQTMQgvitmdgtlqaLAQIFKHGKredclpyaatvlrcldgcrlpesNQTLLRKLGVKLV 301
Cdd:COG5234   176 KRSIFYCL-FSLSQFLKICLQSVE-----------VAQFYLVGQ-----------------------ENSALRKLLCKCL 220
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217494269 302 QRLGLTFLkPKvaawryqrgcrslaanlqLLTQGQSEQKPLILtedddedddvpegvERVIEQLLVGLKDKDTVVRWSAA 381
Cdd:COG5234   221 SRLGIVLL-PV------------------NLPIDSNEESHIYL--------------EVIVDFLLSSVSSIDSFVRFSAA 267
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217494269 382 KGIGRMAGRLPRALADDVVG-----------SVLD--CFSFQETDKAWHGgclALAELGRRGLLlPSRLVD--VVAVILK 446
Cdd:COG5234   268 KGLAKIISRLPWNLAESFIDiielmtenmflSPLEntCDIIITNELVWHG---AILFFALAGAG-LIDYSDclILPIIEK 343
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217494269 447 ALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIAAVFDRDINCRRAASAAFQENVGRQGTFPH 526
Cdd:COG5234   344 GLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVIGRHASIAD 423
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217494269 527 GIDILTTADYFAVGNRSNCFLVISVFIAGFPEYT--QPMIDHLVTMKISHWDGVIRELAARALHNLAQQAPEFSA 599
Cdd:COG5234   424 GLSLISLINYVSVTRISNCSGDLCRKVAHFPKFRscEDVFQDILLTNLQHWDVKVKQLSAYSLRQLIKYPKELPI 498
 
Name Accession Description Interval E-value
CIN1 COG5234
Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones ...
63-599 1.55e-23

Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton];


Pssm-ID: 227559  Cd Length: 993  Bit Score: 106.57  E-value: 1.55e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217494269  63 IMDKYQEQPHLLDPHLEWMMNLLLDI-VQDQTSPASLVHLAFKFLyiitKVRGYKTFLRLFPHEVADVEPVLDLVtiqNP 141
Cdd:COG5234    30 YLQFCQFQPTLLDKLLPKYVPNLASYlFKVKGKCNSITAILYQFC----KIRGHKAVRVLLPVGIQYIKELYTLL---ND 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217494269 142 KDHEAWETRYMLLLWLSVTCLIPFDFSRLDGNLltqpgqaRMSIMDRILQIAESYLIVSDKARDAAAVLVSRFITRPDVK 221
Cdd:COG5234   103 RSNSPWSFHYIVLLYLSQALNTPFPLNSLADKL-------DVKKTIYAIKYLENSPIDIEASNLVLSRLFFRDDALDLLL 175
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217494269 222 QSKMAEFLdWSLCNLARSSFQTMQgvitmdgtlqaLAQIFKHGKredclpyaatvlrcldgcrlpesNQTLLRKLGVKLV 301
Cdd:COG5234   176 KRSIFYCL-FSLSQFLKICLQSVE-----------VAQFYLVGQ-----------------------ENSALRKLLCKCL 220
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217494269 302 QRLGLTFLkPKvaawryqrgcrslaanlqLLTQGQSEQKPLILtedddedddvpegvERVIEQLLVGLKDKDTVVRWSAA 381
Cdd:COG5234   221 SRLGIVLL-PV------------------NLPIDSNEESHIYL--------------EVIVDFLLSSVSSIDSFVRFSAA 267
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217494269 382 KGIGRMAGRLPRALADDVVG-----------SVLD--CFSFQETDKAWHGgclALAELGRRGLLlPSRLVD--VVAVILK 446
Cdd:COG5234   268 KGLAKIISRLPWNLAESFIDiielmtenmflSPLEntCDIIITNELVWHG---AILFFALAGAG-LIDYSDclILPIIEK 343
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217494269 447 ALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIAAVFDRDINCRRAASAAFQENVGRQGTFPH 526
Cdd:COG5234   344 GLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVIGRHASIAD 423
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217494269 527 GIDILTTADYFAVGNRSNCFLVISVFIAGFPEYT--QPMIDHLVTMKISHWDGVIRELAARALHNLAQQAPEFSA 599
Cdd:COG5234   424 GLSLISLINYVSVTRISNCSGDLCRKVAHFPKFRscEDVFQDILLTNLQHWDVKVKQLSAYSLRQLIKYPKELPI 498
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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