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Conserved domains on  [gi|1720372962|ref|XP_030102772|]
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tetratricopeptide repeat protein 6 isoform X12 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
480-647 7.33e-27

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 109.71  E-value: 7.33e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 480 AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNS 559
Cdd:COG0457     8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 560 VLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDY 639
Cdd:COG0457    88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167


                  ....*...
gi 1720372962 640 NQALDLEE 647
Cdd:COG0457   168 EKLEAAAL 175
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
136-336 3.72e-26

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 107.79  E-value: 3.72e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 136 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYG 214
Cdd:COG0457     8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRyEEALADYEQALELDPDDAEALNNLGLALQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 215 LKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDY 294
Cdd:COG0457    88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1720372962 295 GIVLLLDAGENIALNTLINRGLIYTELKQYGFALEDFKQAAL 336
Cdd:COG0457   168 EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 314-577 7.05e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 92.87  E-value: 7.05e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 314 RGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQED 393
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 394 amiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCA 473
Cdd:COG2956    94 ---RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 474 IKINST-AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEyALM 552
Cdd:COG2956   171 LKLDPDcARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD-LLL 249

                         250       260
                  ....*....|....*....|....*
gi 1720372962 553 NRAVTNSVLKKYEEAEKDFSCAMER 577
Cdd:COG2956   250 ALADLLERKEGLEAALALLERQLRR 274
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 5-236 4.48e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 81.70  E-value: 4.48e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962   5 KLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAkFTIYQVAEMNKGIIEMSPIQEALIYSFCENHDKAIHILEG 84
Cdd:COG2956    23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRA-IRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEK 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  85 VIASKP-DISTYALLAKAQMKAKRIKESVRLFKKALELytfsdkgpvaTSVSAECLYNLGLCYMEEGNFQMAFESFTKAV 163
Cdd:COG2956   102 LLELDPdDAEALRLLAEIYEQEGDWEKAIEVLERLLKL----------GPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720372962 164 KANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPES 236
Cdd:COG2956   172 KLDPDCARALLLLAELYLEQGDyEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD 245
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
480-647 7.33e-27

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 109.71  E-value: 7.33e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 480 AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNS 559
Cdd:COG0457     8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 560 VLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDY 639
Cdd:COG0457    88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167


                  ....*...
gi 1720372962 640 NQALDLEE 647
Cdd:COG0457   168 EKLEAAAL 175
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
136-336 3.72e-26

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 107.79  E-value: 3.72e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 136 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYG 214
Cdd:COG0457     8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRyEEALADYEQALELDPDDAEALNNLGLALQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 215 LKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDY 294
Cdd:COG0457    88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1720372962 295 GIVLLLDAGENIALNTLINRGLIYTELKQYGFALEDFKQAAL 336
Cdd:COG0457   168 EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 314-577 7.05e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 92.87  E-value: 7.05e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 314 RGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQED 393
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 394 amiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCA 473
Cdd:COG2956    94 ---RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 474 IKINST-AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEyALM 552
Cdd:COG2956   171 LKLDPDcARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD-LLL 249

                         250       260
                  ....*....|....*....|....*
gi 1720372962 553 NRAVTNSVLKKYEEAEKDFSCAMER 577
Cdd:COG2956   250 ALADLLERKEGLEAALALLERQLRR 274
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 253-646 6.73e-20

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 94.38  E-value: 6.73e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 253 YKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENiALNTLINRglIYTELKQYGFALEDF- 331
Cdd:TIGR02917  38 YKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKN-QVLPLLAR--AYLLQGKFQQVLDELp 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 332 KQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPS 411
Cdd:TIGR02917 115 GKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFD---EARALIDEVLTADPG 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 412 CLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKI---NSTAEFLtnRGV 488
Cdd:TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKapnSPLAHYL--KAL 269

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 489 IHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAE 568
Cdd:TIGR02917 270 VDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAI 349

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720372962 569 KDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYNQALDLE 646
Cdd:TIGR02917 350 ATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD 427
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 5-236 4.48e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 81.70  E-value: 4.48e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962   5 KLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAkFTIYQVAEMNKGIIEMSPIQEALIYSFCENHDKAIHILEG 84
Cdd:COG2956    23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRA-IRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEK 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  85 VIASKP-DISTYALLAKAQMKAKRIKESVRLFKKALELytfsdkgpvaTSVSAECLYNLGLCYMEEGNFQMAFESFTKAV 163
Cdd:COG2956   102 LLELDPdDAEALRLLAEIYEQEGDWEKAIEVLERLLKL----------GPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720372962 164 KANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPES 236
Cdd:COG2956   172 KLDPDCARALLLLAELYLEQGDyEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD 245
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1-555 1.16e-16

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 83.98  E-value: 1.16e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962   1 MQLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKFTIYQVAEMNKgiiEMSPIQEALIYSFCENH--DKA 78
Cdd:TIGR02917 374 LALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP---ELGRADLLLILSYLRSGqfDKA 450

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  79 IHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELytfsdkgpvaTSVSAECLYNLGLCYMEEGNFQMAFE 157
Cdd:TIGR02917 451 LAAAKKLEKKQPDnASLHNLLGAIYLGKGDLAKAREAFEKALSI----------EPDFFPAAANLARIDIQEGNPDDAIQ 520

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 158 SFTKAVKANPEFAEAfyHRGLCKVKL---NKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYP 234
Cdd:TIGR02917 521 RFEKVLTIDPKNLRA--ILALAGLYLrtgNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP 598

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 235 ESVRAYicrgvlkyynrtyklgitdlstaikmdknnytayynralcytkigehqmalrdygivLLLdagenialntlinr 314
Cdd:TIGR02917 599 DSPEAW---------------------------------------------------------LML-------------- 607

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 315 GLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDA 394
Cdd:TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTES 687

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 395 MIQAQKDFLKAlhldpsclkarislgYNLQAQGKFQKAWIHFTVGiesnpksylayegravvclqmsNYFAAMQDINCAI 474
Cdd:TIGR02917 688 AKKIAKSLQKQ---------------HPKAALGFELEGDLYLRQK----------------------DYPAAIQAYRKAL 730

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 475 KINSTAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNR 554
Cdd:TIGR02917 731 KRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNL 810


                  .
gi 1720372962 555 A 555
Cdd:TIGR02917 811 A 811
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 110-323 6.35e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 55.76  E-value: 6.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 110 ESVRLFKKALELYTFSDKGPVAtsvsaeclYNL-GLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNKQNS 188
Cdd:TIGR00990 312 EAARAFEKALDLGKLGEKEAIA--------LNLrGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDK 383

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 189 IL-DFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMD 267
Cdd:TIGR00990 384 AEeDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1720372962 268 KNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDA---GENIALNTLINRGLIYTELKQ 323
Cdd:TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKetkPMYMNVLPLINKALALFQWKQ 522
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 244-437 2.85e-06

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 48.53  E-value: 2.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 244 GVLKYYNRTYKLGitdlstaikmDKNNYTAYYNRALCYTKIGEHQMALRdygivlLLDA---GENIALNTLINRGLIYTE 320
Cdd:NF040959   20 NMVNGYNRLFSLS----------DRDRAKMYRNKGISHAKKGRYDKAVR------YLEQvarIDPDDVEALYRLGVAYLK 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 321 LKQYGFALEDFKqaalmsgTSVSLCQATATCHHR-------IKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQED 393
Cdd:NF040959   84 TGQYDRAIKVLE-------KVLSLAPDHVKAAYRkgvallkIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYD 156

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1720372962 394 AMIQAqkdFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFT 437
Cdd:NF040959  157 KAIEA---FQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHFK 197
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 480-571 4.03e-06

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 49.12  E-value: 4.03e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 480 AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNS 559
Cdd:PRK11189   64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143

                          90
                  ....*....|..
gi 1720372962 560 VLKKYEEAEKDF 571
Cdd:PRK11189  144 YGGRYELAQDDL 155
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 136-169 2.55e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 41.28  E-value: 2.55e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1720372962  136 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPEF 169
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
136-169 5.64e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.48  E-value: 5.64e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1720372962 136 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPEF 169
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 357-411 9.66e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 44.93  E-value: 9.66e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1720372962 357 EFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPS 411
Cdd:cd24142    15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVE---EAREVLLRAIELDPD 66
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 151-209 1.76e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 44.39  E-value: 1.76e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 151 NFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSR 209
Cdd:PLN03088   17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNfTEAVADANKAIELDPSLAKAYLRK 76
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 516-547 4.91e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.11  E-value: 4.91e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1720372962  516 AYFNAGNIYLHHRQFSQASDYFSTALKFNPEN 547
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_11 pfam13414
TPR repeat;
494-525 6.08e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.14  E-value: 6.08e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1720372962 494 GQQQSAMADYQAAISLNPSYSLAYFNAGNIYL 525
Cdd:pfam13414   8 GKYEEAIEAYKKALKLDPDNPEAYYNLGLAYY 39
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 493-549 6.70e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 39.15  E-value: 6.70e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1720372962 493 MGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEY 549
Cdd:cd24142    13 QGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGY 69
TPR_12 pfam13424
Tetratricopeptide repeat;
92-168 7.50e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 35.83  E-value: 7.50e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720372962  92 ISTYALLAKAQMKAKRIKESVRLFKKALELY--TFSDKGPVAtsvsAECLYNLGLCYMEEGNFQMAFESFTKAVKANPE 168
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrLLGPDHPLT----ATTLLNLGRLYLELGRYEEALELLERALALAEK 77
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 96-168 8.88e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 38.76  E-value: 8.88e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720372962  96 ALLAKAQMK--AKRIKESVRLFKKALELYtfsdkgpvatSVSAECLYNLGLCYMEEGNFQMAFESFTKAVKANPE 168
Cdd:cd24142     2 ELLEKAEELldQGNFELALKFLQRALELE----------PNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
480-647 7.33e-27

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 109.71  E-value: 7.33e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 480 AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNS 559
Cdd:COG0457     8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 560 VLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDY 639
Cdd:COG0457    88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167


                  ....*...
gi 1720372962 640 NQALDLEE 647
Cdd:COG0457   168 EKLEAAAL 175
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
136-336 3.72e-26

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 107.79  E-value: 3.72e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 136 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYG 214
Cdd:COG0457     8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRyEEALADYEQALELDPDDAEALNNLGLALQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 215 LKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDY 294
Cdd:COG0457    88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1720372962 295 GIVLLLDAGENIALNTLINRGLIYTELKQYGFALEDFKQAAL 336
Cdd:COG0457   168 EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
440-647 3.76e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 104.70  E-value: 3.76e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 440 IESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKINST-AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYF 518
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 519 NAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKY 598
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1720372962 599 KLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYNQALDLEE 647
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
406-647 5.32e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 101.24  E-value: 5.32e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 406 LHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLT 484
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDpDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 485 NRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKY 564
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 565 EEAEKDFscAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYNQALD 644
Cdd:COG0457   161 EEALELL--EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238


                  ...
gi 1720372962 645 LEE 647
Cdd:COG0457   239 ALY 241
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
163-335 1.00e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 100.47  E-value: 1.00e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 163 VKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYI 241
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRyEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 242 CRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNtliNRGLIYTEL 321
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY---NLGIALEKL 157

                         170
                  ....*....|....
gi 1720372962 322 KQYGFALEDFKQAA 335
Cdd:COG0457   158 GRYEEALELLEKLE 171
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
196-434 4.70e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 92.76  E-value: 4.70e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 196 LTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYY 275
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 276 NRALCYTKIGEHQMALRDYGIVLLLDAGENIALNtliNRGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRI 355
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALY---NLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720372962 356 KEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDAMIQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWI 434
Cdd:COG0457   158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLA 236
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 314-577 7.05e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 92.87  E-value: 7.05e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 314 RGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQED 393
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 394 amiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCA 473
Cdd:COG2956    94 ---RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 474 IKINST-AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEyALM 552
Cdd:COG2956   171 LKLDPDcARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD-LLL 249

                         250       260
                  ....*....|....*....|....*
gi 1720372962 553 NRAVTNSVLKKYEEAEKDFSCAMER 577
Cdd:COG2956   250 ALADLLERKEGLEAALALLERQLRR 274
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
86-336 1.24e-20

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 91.61  E-value: 1.24e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  86 IASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELYtfsdkgpvatSVSAECLYNLGLCYMEEGNFQMAFESFTKAVK 164
Cdd:COG0457     1 LELDPDdAEAYNNLGLAYRRLGRYEEAIEDYEKALELD----------PDDAEALYNLGLAYLRLGRYEEALADYEQALE 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 165 ANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICR 243
Cdd:COG0457    71 LDPDDAEALNNLGLALQALGRyEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 244 GVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNTLINRGLIYTELKQ 323
Cdd:COG0457   151 GIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230

                         250
                  ....*....|...
gi 1720372962 324 YGFALEDFKQAAL 336
Cdd:COG0457   231 LALRLAALALYQY 243
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
413-644 1.62e-20

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 90.74  E-value: 1.62e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 413 LKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKINSTAEFLTNRGVIHEF 492
Cdd:COG4785     6 LALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDS 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 493 MGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFS 572
Cdd:COG4785    86 LGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLE 165

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720372962 573 CAMERCPHWAALYFNRAsFYVYLKKYKLAEEDLgiglslkpDEAIMYNLRAQvrgkmGLIAEAMSDYNQALD 644
Cdd:COG4785   166 KALELDPNDPERALWLY-LAERKLDPEKALALL--------LEDWATAYLLQ-----GDTEEARELFKLALA 223
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 379-643 2.43e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 91.33  E-value: 2.43e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 379 YIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCL 458
Cdd:COG2956    11 WYFKGLNYLLNGQPD---KAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 459 QMSNYFAAMQDINCAIKINST-AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYF 537
Cdd:COG2956    88 KAGLLDRAEELLEKLLELDPDdAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 538 STALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAI 617
Cdd:COG2956   168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247

                         250       260
                  ....*....|....*....|....*.
gi 1720372962 618 MYNLrAQVRGKMGLIAEAMSDYNQAL 643
Cdd:COG2956   248 LLAL-ADLLERKEGLEAALALLERQL 272
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 253-646 6.73e-20

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 94.38  E-value: 6.73e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 253 YKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENiALNTLINRglIYTELKQYGFALEDF- 331
Cdd:TIGR02917  38 YKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKN-QVLPLLAR--AYLLQGKFQQVLDELp 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 332 KQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPS 411
Cdd:TIGR02917 115 GKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFD---EARALIDEVLTADPG 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 412 CLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKI---NSTAEFLtnRGV 488
Cdd:TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKapnSPLAHYL--KAL 269

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 489 IHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAE 568
Cdd:TIGR02917 270 VDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAI 349

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720372962 569 KDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYNQALDLE 646
Cdd:TIGR02917 350 ATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD 427
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
349-535 7.26e-20

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 89.30  E-value: 7.26e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 349 ATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGK 428
Cdd:COG0457    15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYE---EALADYEQALELDPDDAEALNNLGLALQALGR 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 429 FQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQSAMADYQAAI 507
Cdd:COG0457    92 YEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDpDDADALYNLGIALEKLGRYEEALELLEKLE 171

                         170       180
                  ....*....|....*....|....*...
gi 1720372962 508 SLNPSYSLAYFNAGNIYLHHRQFSQASD 535
Cdd:COG0457   172 AAALAALLAAALGEAALALAAAEVLLAL 199
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
66-235 1.48e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 88.53  E-value: 1.48e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  66 ALIYSFCENHDKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELytfsdkgpvaTSVSAECLYNLGL 144
Cdd:COG0457    15 GLAYRRLGRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALEL----------DPDDAEALNNLGL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 145 CYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAI 223
Cdd:COG0457    85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRyDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164

                         170
                  ....*....|..
gi 1720372962 224 LNCNEAIKLYPE 235
Cdd:COG0457   165 ELLEKLEAAALA 176
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 213-432 3.25e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 88.25  E-value: 3.25e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 213 YGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALR 292
Cdd:COG2956    18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 293 DYGIVLLLDAGENIALNTLINrglIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKIN 372
Cdd:COG2956    98 LLEKLLELDPDDAEALRLLAE---IYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 373 PHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKA 432
Cdd:COG2956   175 PDCARALLLLAELYLEQGDYE---EAIAALERALEQDPDYLPALPRLAELYEKLGDPEEA 231
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 63-372 7.31e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 87.09  E-value: 7.31e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  63 IQEALIYSFCENHDKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELytfsdkgpvaTSVSAECLYN 141
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPEtVEAHLALGNLYRRRGEYDRAIRIHQKLLER----------DPDRAEALLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 142 LGLCYMEEGNFQmafesftKAVKAnpefaeafyhrglckvklnkqnsildFNRALTLNPKHYQAYLSRVAYYGLKGRYSK 221
Cdd:COG2956    82 LAQDYLKAGLLD-------RAEEL--------------------------LEKLLELDPDDAEALRLLAEIYEQEGDWEK 128

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 222 AILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLD 301
Cdd:COG2956   129 AIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD 208

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720372962 302 AGENIALNTLinrGLIYTELKQYGFALEDFKQaALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKIN 372
Cdd:COG2956   209 PDYLPALPRL---AELYEKLGDPEEALELLRK-ALELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 480-652 1.33e-18

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 90.05  E-value: 1.33e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 480 AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNS 559
Cdd:COG3914    78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 560 VLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDY 639
Cdd:COG3914   158 RLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFE 237

                         170
                  ....*....|...
gi 1720372962 640 NQALDLEECSTAM 652
Cdd:COG3914   238 ELLAALARGPSEL 250
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 257-510 1.48e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 86.32  E-value: 1.48e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 257 ITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNTLinrGLIYTELKQYGFALEDFKQAAL 336
Cdd:COG2956    28 IDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLEL---AQDYLKAGLLDRAEELLEKLLE 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 337 MSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKAR 416
Cdd:COG2956   105 LDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD---EAIEALEKALKLDPDCARAL 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 417 ISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKINSTAEFLTNRGVIHEFMGQQ 496
Cdd:COG2956   182 LLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGL 261

                         250
                  ....*....|....
gi 1720372962 497 QSAMADYQAAISLN 510
Cdd:COG2956   262 EAALALLERQLRRH 275
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 204-646 5.69e-18

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 88.22  E-value: 5.69e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 204 QAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESV-------RAYICRGVL----KYYNRTYKLGitdlstaikMDKNNYT 272
Cdd:TIGR02917  23 EELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAearfllgKIYLALGDYaaaeKELRKALSLG---------YPKNQVL 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 273 AYYNRAlcYTKIGEHQMALRDYGIVLLLDAGENIALNTLinRGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCH 352
Cdd:TIGR02917  94 PLLARA--YLLQGKFQQVLDELPGKTLLDDEGAAELLAL--RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLA 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 353 HRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNsyMEYSQEDaMIQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKA 432
Cdd:TIGR02917 170 LAENRFDEARALIDEVLTADPGNVDALLLKGD--LLLSLGN-IELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 433 WIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN--------------------STAEFLTNR------ 486
Cdd:TIGR02917 247 EKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSApeylpalllagaseyqlgnlEQAYQYLNQilkyap 326

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 487 ---------GVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVT 557
Cdd:TIGR02917 327 nshqarrllASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIS 406

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 558 NSVLKKYEEAEKDFSCAMERCPHwaalyFNRASFYVYLKKYKLAEEDLGI-----GLSLKPDEAIMYNLRAQVRGKMGLI 632
Cdd:TIGR02917 407 KLSQGDPSEAIADLETAAQLDPE-----LGRADLLLILSYLRSGQFDKALaaakkLEKKQPDNASLHNLLGAIYLGKGDL 481

                         490
                  ....*....|....
gi 1720372962 633 AEAMSDYNQALDLE 646
Cdd:TIGR02917 482 AKAREAFEKALSIE 495
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
165-288 2.25e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 81.50  E-value: 2.25e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 165 ANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICR 243
Cdd:COG4785    68 ALPDLAQLYYERGVAYDSLGDyDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1720372962 244 GVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQ 288
Cdd:COG4785   148 GIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEK 192
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 5-236 4.48e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 81.70  E-value: 4.48e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962   5 KLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAkFTIYQVAEMNKGIIEMSPIQEALIYSFCENHDKAIHILEG 84
Cdd:COG2956    23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRA-IRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEK 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  85 VIASKP-DISTYALLAKAQMKAKRIKESVRLFKKALELytfsdkgpvaTSVSAECLYNLGLCYMEEGNFQMAFESFTKAV 163
Cdd:COG2956   102 LLELDPdDAEALRLLAEIYEQEGDWEKAIEVLERLLKL----------GPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720372962 164 KANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPES 236
Cdd:COG2956   172 KLDPDCARALLLLAELYLEQGDyEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD 245
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 480-615 5.92e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 77.92  E-value: 5.92e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 480 AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNS 559
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1720372962 560 VLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDE 615
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1-555 1.16e-16

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 83.98  E-value: 1.16e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962   1 MQLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKFTIYQVAEMNKgiiEMSPIQEALIYSFCENH--DKA 78
Cdd:TIGR02917 374 LALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP---ELGRADLLLILSYLRSGqfDKA 450

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  79 IHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELytfsdkgpvaTSVSAECLYNLGLCYMEEGNFQMAFE 157
Cdd:TIGR02917 451 LAAAKKLEKKQPDnASLHNLLGAIYLGKGDLAKAREAFEKALSI----------EPDFFPAAANLARIDIQEGNPDDAIQ 520

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 158 SFTKAVKANPEFAEAfyHRGLCKVKL---NKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYP 234
Cdd:TIGR02917 521 RFEKVLTIDPKNLRA--ILALAGLYLrtgNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP 598

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 235 ESVRAYicrgvlkyynrtyklgitdlstaikmdknnytayynralcytkigehqmalrdygivLLLdagenialntlinr 314
Cdd:TIGR02917 599 DSPEAW---------------------------------------------------------LML-------------- 607

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 315 GLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDA 394
Cdd:TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTES 687

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 395 MIQAQKDFLKAlhldpsclkarislgYNLQAQGKFQKAWIHFTVGiesnpksylayegravvclqmsNYFAAMQDINCAI 474
Cdd:TIGR02917 688 AKKIAKSLQKQ---------------HPKAALGFELEGDLYLRQK----------------------DYPAAIQAYRKAL 730

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 475 KINSTAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNR 554
Cdd:TIGR02917 731 KRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNL 810


                  .
gi 1720372962 555 A 555
Cdd:TIGR02917 811 A 811
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 495-645 2.76e-16

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 82.73  E-value: 2.76e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 495 QQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCA 574
Cdd:COG3914    59 LLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRA 138

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720372962 575 MERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYNQALDL 645
Cdd:COG3914   139 LALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 5-620 1.07e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 80.90  E-value: 1.07e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962   5 KLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKFTIYQVAEMNKGIIeMSPIQEALIySFCENH-DKAIHILE 83
Cdd:TIGR02917 174 RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNI-AVLLALATI-LIEAGEfEEAEKHAD 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  84 GVIASKPDiSTYALLAKAQMKAKRIKesvrlFKKALElytfsdkgPVATSVSA-----ECLYNLGLCYMEEGNFQMAFES 158
Cdd:TIGR02917 252 ALLKKAPN-SPLAHYLKALVDFQKKN-----YEDARE--------TLQDALKSapeylPALLLAGASEYQLGNLEQAYQY 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 159 FTKAVKANPEFAEAFYHRGLCKVKLNKQNSIL-DFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESV 237
Cdd:TIGR02917 318 LNQILKYAPNSHQARRLLASIQLRLGRVDEAIaTLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENA 397

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 238 RAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRdygIVLLLDAGENIALNTLINRGLI 317
Cdd:TIGR02917 398 AARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALA---AAKKLEKKQPDNASLHNLLGAI 474

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 318 YTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDA-------YIGRGNSYM--- 387
Cdd:TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAilalaglYLRTGNEEEava 554

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 388 -----------EYSQEDAMIQA---QKDFLKALHL-------DPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKS 446
Cdd:TIGR02917 555 wlekaaelnpqEIEPALALAQYylgKGQLKKALAIlneaadaAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS 634

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 447 YLAYEGRAVVCLQMSNYFAAMQDINCAIKI---NSTAEFLTNRGVIHEfmGQQQSAMADYQAAISLNPSYSLAYFNAGNI 523
Cdd:TIGR02917 635 ALALLLLADAYAVMKNYAKAITSLKRALELkpdNTEAQIGLAQLLLAA--KRTESAKKIAKSLQKQHPKAALGFELEGDL 712

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 524 YLHHRQFSQASDYFSTALKFNPENEyALMNRAVTNSVLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEE 603
Cdd:TIGR02917 713 YLRQKDYPAAIQAYRKALKRAPSSQ-NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK 791

                         650
                  ....*....|....*..
gi 1720372962 604 DLGIGLSLKPDEAIMYN 620
Cdd:TIGR02917 792 HYQTVVKKAPDNAVVLN 808
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 107-643 1.51e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 80.51  E-value: 1.51e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 107 RIKESVRLFKKALELytFSDKGPVATSVSAECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYhrGLCKVKLNKQ 186
Cdd:TIGR02917  98 RAYLLQGKFQQVLDE--LPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKL--GLAQLALAEN 173

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 187 N---SILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTA 263
Cdd:TIGR02917 174 RfdeARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADAL 253

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 264 IKMDKNNYTAYYNRALCYTKIGEHQMAlRDYGIVLLLDAGENiaLNTLINRGLIYTELKQYGFALEDFKQAALMSGTSVS 343
Cdd:TIGR02917 254 LKKAPNSPLAHYLKALVDFQKKNYEDA-RETLQDALKSAPEY--LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQ 330

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 344 LCQATATCHHRIKEFEGAVEFFTRAIKINPhyVDAYIgRGNSYMEYSQEDAMIQAQKDFLKALHLDPSCLKARISLGYNL 423
Cdd:TIGR02917 331 ARRLLASIQLRLGRVDEAIATLSPALGLDP--DDPAA-LSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISK 407

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 424 QAQGKFQKAWIHFTVGIESNPKSylayeGRAVVCLQMSnyFAAMQDINCAIKI---------NSTAEFLTnRGVIHEFMG 494
Cdd:TIGR02917 408 LSQGDPSEAIADLETAAQLDPEL-----GRADLLLILS--YLRSGQFDKALAAakklekkqpDNASLHNL-LGAIYLGKG 479

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 495 QQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCA 574
Cdd:TIGR02917 480 DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKA 559

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720372962 575 MERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLraqvrgkMGLIAEAMSDYNQAL 643
Cdd:TIGR02917 560 AELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM-------LGRAQLAAGDLNKAV 621
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
243-441 2.95e-15

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 75.34  E-value: 2.95e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 243 RGVLKYYNRTYKLGITDLSTAIkMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALN------TLINRGL 316
Cdd:COG4785     3 ALALALLLALALAAAAASKAAI-LLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAlpdlaqLYYERGV 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 317 IYTELKQYGFALEDFKQA-ALMSGTSVSLCQAtATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDAm 395
Cdd:COG4785    82 AYDSLGDYDLAIADFDQAlELDPDLAEAYNNR-GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL- 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720372962 396 iqAQKDFLKALHLDPSC----------------LKARISL----GYNLQAQGKFQKAWIHFTVGIE 441
Cdd:COG4785   160 --AIADLEKALELDPNDperalwlylaerkldpEKALALLledwATAYLLQGDTEEARELFKLALA 223
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 3-213 1.15e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 74.26  E-value: 1.15e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962   3 LHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKF-TIYQVAEMNKGIIEMSPIQEALIYSFCENHDKAIHI 81
Cdd:COG3914    21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAaGEAAAAAAALLLLAALLELAALLLQALGRYEEALAL 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  82 LEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELYtfSDkgpvatsvSAECLYNLGLCYMEEGNFQMAFESFT 160
Cdd:COG3914   101 YRRALALNPDnAEALFNLGNLLLALGRLEEALAALRRALALN--PD--------FAEAYLNLGEALRRLGRLEEAIAALR 170

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1720372962 161 KAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYY 213
Cdd:COG3914   171 RALELDPDNAEALNNLGNALQDLGRlEEAIAAYRRALELDPDNADAHSNLLFAL 224
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 146-304 4.16e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 72.33  E-value: 4.16e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 146 YMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAIL 224
Cdd:COG3914    88 LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRlEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA 167

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 225 NCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGE 304
Cdd:COG3914   168 ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGP 247
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 322-646 6.66e-13

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 71.55  E-value: 6.66e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 322 KQYGFALEDFKQAALMSGTSVSLCQATAtCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQ-EDAMI---- 396
Cdd:TIGR00990 141 KDFNKAIKLYSKAIECKPDPVYYSNRAA-CHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKyADALLdlta 219

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 397 ----------------------QAQKDFLKALHLDPSCLKARISLGYNLQA-QGKFQKAWIHFTVGI-ESNPKSYLAYEG 452
Cdd:TIGR00990 220 sciidgfrneqsaqaverllkkFAESKAKEILETKPENLPSVTFVGNYLQSfRPKPRPAGLEDSNELdEETGNGQLQLGL 299

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 453 RAVVCLQMSNYFAAMQDINCAIKINSTAEFLT----NRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHR 528
Cdd:TIGR00990 300 KSPESKADESYEEAARAFEKALDLGKLGEKEAialnLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELG 379

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 529 QFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIG 608
Cdd:TIGR00990 380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1720372962 609 LSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYNQALDLE 646
Cdd:TIGR00990 460 KKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 267-590 1.03e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 71.18  E-value: 1.03e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 267 DKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNTLINRGLIYTELKQYGFALEDFKQAALMSGTSvslcq 346
Cdd:COG3914    13 AAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALL----- 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 347 atatcHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNsymEYSQEDAMIQAQKDFLKALHLDPSCLKARISLGYNLQAQ 426
Cdd:COG3914    88 -----LQALGRYEEALALYRRALALNPDNAEALFNLGN---LLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 427 GKFQKawihftvgiesnpksylayegravvclqmsnyfaamqdincaikinstaefltnrgvihefmgqqqsAMADYQAA 506
Cdd:COG3914   160 GRLEE-------------------------------------------------------------------AIAALRRA 172

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 507 ISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMN------RAVTNSVLKKYEEAEKDFSCAMERCPH 580
Cdd:COG3914   173 LELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNllfalrQACDWEVYDRFEELLAALARGPSELSP 252

                         330
                  ....*....|
gi 1720372962 581 WAALYFNRAS 590
Cdd:COG3914   253 FALLYLPDDD 262
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
161-370 1.07e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.02  E-value: 1.07e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 161 KAVKANPEFAEAFYHRGLCKVKLNKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAY 240
Cdd:COG4785    31 FAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAY 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 241 ICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENialntlinrgliYTE 320
Cdd:COG4785   111 NNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP------------ERA 178

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1720372962 321 LKQYGFALEDFKQAALmsgtsVSLCQATATCHHRIKEFEGAVEFFTRAIK 370
Cdd:COG4785   179 LWLYLAERKLDPEKAL-----ALLLEDWATAYLLQGDTEEARELFKLALA 223
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 411-547 1.23e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 65.60  E-value: 1.23e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 411 SCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKINST-AEFLTNRGVI 489
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDePEARLNLGLA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1720372962 490 HEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPEN 547
Cdd:COG4783    82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
359-556 1.61e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 67.25  E-value: 1.61e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 359 EGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDAMIQAQKDFLKAL---HLDPSCLKARISLGYNLQAQGKFQKAWIH 435
Cdd:COG4785    16 AAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIdraLALPDLAQLYYERGVAYDSLGDYDLAIAD 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 436 FTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPS-- 512
Cdd:COG4785    96 FDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDpDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNdp 175

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1720372962 513 --YSLAYFNAGNIYLHHRQFSQASDYFSTAL-KFNPENEYALMNRAV 556
Cdd:COG4785   176 erALWLYLAERKLDPEKALALLLEDWATAYLlQGDTEEARELFKLAL 222
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 516-646 2.25e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.83  E-value: 2.25e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 516 AYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYL 595
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1720372962 596 KKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYNQALDLE 646
Cdd:COG4783    86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 136-270 2.40e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.83  E-value: 2.40e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 136 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNKQNS-ILDFNRALTLNPKHYQAYLSRVAYYG 214
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEaIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1720372962 215 LKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNN 270
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 91-236 2.50e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.44  E-value: 2.50e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  91 DISTYALLAKAQMKAKRIKESVRLFKKALELYTfsdkgpvaTSVSAecLYNLGLCYMEEGNFQMAFESFTKAVKANPEFA 170
Cdd:COG4783     3 CAEALYALAQALLLAGDYDEAEALLEKALELDP--------DNPEA--FALLGEILLQLGDLDEAIVLLHEALELDPDEP 72

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720372962 171 EAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPES 236
Cdd:COG4783    73 EARLNLGLALLKAGDyDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 248-647 2.53e-12

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 70.01  E-value: 2.53e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 248 YYNRTYKLGITDLSTAIKMdKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNtliNRGLIYTELKQYGFA 327
Cdd:TIGR00990 138 YRNKDFNKAIKLYSKAIEC-KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALN---RRANAYDGLGKYADA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 328 LEDFKQAALMSG-TSVSLCQATATCHHRIKEFEGAVEFFTRAIKI-NPHYVDAYIGRGNSYMEYSQEDAMIQAQKDFLKA 405
Cdd:TIGR00990 214 LLDLTASCIIDGfRNEQSAQAVERLLKKFAESKAKEILETKPENLpSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNG 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 406 -LHLDPSCLKARISLGYNlQAQGKFQKAwihFTVGiESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKINS--TAEF 482
Cdd:TIGR00990 294 qLQLGLKSPESKADESYE-EAARAFEKA---LDLG-KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPrvTQSY 368

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 483 LtNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLK 562
Cdd:TIGR00990 369 I-KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG 447

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 563 KYEEAEKDFSCAMERCP-------HWAALYFNRASFYVYLKKYklaeeDLGIGLSLKPDEaiMYNLRAQVRGKMGLIAEA 635
Cdd:TIGR00990 448 SIASSMATFRRCKKNFPeapdvynYYGELLLDQNKFDEAIEKF-----DTAIELEKETKP--MYMNVLPLINKALALFQW 520

                         410
                  ....*....|..
gi 1720372962 636 MSDYNQALDLEE 647
Cdd:TIGR00990 521 KQDFIEAENLCE 532
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
91-209 2.67e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 66.86  E-value: 2.67e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  91 DISTYALLAKAQMKAKRIKESVRLFKKALELYtfsdkgpvatSVSAECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFA 170
Cdd:COG4785    72 LAQLYYERGVAYDSLGDYDLAIADFDQALELD----------PDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYA 141

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1720372962 171 EAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSR 209
Cdd:COG4785   142 YAYLNRGIALYYLGRyELAIADLEKALELDPNDPERALWL 181
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 170-304 4.25e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.06  E-value: 4.25e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 170 AEAFYHRGLCKVKLNKQNSIL-DFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKY 248
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEaLLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1720372962 249 YNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGE 304
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 135-241 1.65e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 61.95  E-value: 1.65e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 135 SAECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNKQN-SILDFNRALTLNPKHYQAYLSRVAYY 213
Cdd:COG4235    16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEeAEELLERALALDPDNPEALYLLGLAA 95

                          90       100
                  ....*....|....*....|....*...
gi 1720372962 214 GLKGRYSKAILNCNEAIKLYPESVRAYI 241
Cdd:COG4235    96 FQQGDYAEAIAAWQKLLALLPADAPARL 123
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
145-238 2.02e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 60.57  E-value: 2.02e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 145 CYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAIL 224
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                          90
                  ....*....|....
gi 1720372962 225 NCNEAIKLYPESVR 238
Cdd:COG3063    81 YLERALELDPSALR 94
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 184-312 2.44e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 66.94  E-value: 2.44e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 184 NKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTA 263
Cdd:COG3914    93 RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRA 172

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1720372962 264 IKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNTLI 312
Cdd:COG3914   173 LELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLL 221
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 63-202 4.62e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 60.98  E-value: 4.62e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  63 IQEALIYSFCENHDKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELYtfsdkgpvatSVSAECLYN 141
Cdd:COG4783     8 YALAQALLLAGDYDEAEALLEKALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEALELD----------PDEPEARLN 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720372962 142 LGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKH 202
Cdd:COG4783    78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRpDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 499-625 7.07e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.02  E-value: 7.07e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 499 AMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERC 578
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1720372962 579 PHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQV 625
Cdd:COG4235    82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
499-645 8.78e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 62.24  E-value: 8.78e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 499 AMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALkFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERC 578
Cdd:COG4785    25 LLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAL-ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD 103

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720372962 579 PHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYNQALDL 645
Cdd:COG4785   104 PDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALEL 170
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
489-579 1.02e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 58.64  E-value: 1.02e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 489 IHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDyFSTALKFNPENEYALMNRAVTNSVLKKYEEAE 568
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|.
gi 1720372962 569 KDFSCAMERCP 579
Cdd:COG3063    80 AYLERALELDP 90
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 352-446 1.14e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 59.63  E-value: 1.14e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 352 HHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQK 431
Cdd:COG4235    27 YLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTE---EAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103

                          90
                  ....*....|....*
gi 1720372962 432 AWIHFTVGIESNPKS 446
Cdd:COG4235   104 AIAAWQKLLALLPAD 118
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 356-651 3.69e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 63.18  E-value: 3.69e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 356 KEFEGAVEFFTRAIKINPHYVDAYIGRG--NSYMEYSqEDAMIQAQKDFLKALHLdpsclkarisLGYNLQAQGKFQKAW 433
Cdd:TIGR02917  77 KELRKALSLGYPKNQVLPLLARAYLLQGkfQQVLDEL-PGKTLLDDEGAAELLAL----------RGLAYLGLGQLELAQ 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 434 IHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPS 512
Cdd:TIGR02917 146 KSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADpGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN 225

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 513 YSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCP-HWAALYFNRASF 591
Cdd:TIGR02917 226 NIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPeYLPALLLAGASE 305

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 592 YvYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYNQALDLEECSTA 651
Cdd:TIGR02917 306 Y-QLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPA 364
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 376-513 5.32e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.89  E-value: 5.32e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 376 VDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAV 455
Cdd:COG4783     4 AEALYALAQALLLAGDYD---EAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1720372962 456 VCLQMSNYFAAMQDINCAIKINST-AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSY 513
Cdd:COG4783    81 ALLKAGDYDEALALLEKALKLDPEhPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 307-446 7.67e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.51  E-value: 7.67e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 307 ALNTLINRGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSY 386
Cdd:COG4783     3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 387 MEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKS 446
Cdd:COG4783    83 LKAGDYD---EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 447-579 8.70e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 57.66  E-value: 8.70e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 447 YLAYEGRAVVCLQMSNYFAAMQDINCAIKINSTAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLH 526
Cdd:COG5010    21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR 100

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1720372962 527 HRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCP 579
Cdd:COG5010   101 SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 440-548 1.49e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 56.55  E-value: 1.49e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 440 IESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYF 518
Cdd:COG4235    10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDpDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALY 89

                          90       100       110
                  ....*....|....*....|....*....|
gi 1720372962 519 NAGNIYLHHRQFSQASDYFSTALKFNPENE 548
Cdd:COG4235    90 LLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
351-447 1.57e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 55.18  E-value: 1.57e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 351 CHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDAMIQaqkdFLKALHLDPSCLKARISLGYNLQAQGKFQ 430
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA----LEKALKLDPNNAEALLNLAELLLELGDYD 76

                          90
                  ....*....|....*..
gi 1720372962 431 KAWIHFTVGIESNPKSY 447
Cdd:COG3063    77 EALAYLERALELDPSAL 93
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 189-298 3.45e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 55.40  E-value: 3.45e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 189 ILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDK 268
Cdd:COG4235     3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82

                          90       100       110
                  ....*....|....*....|....*....|
gi 1720372962 269 NNYTAYYNRALCYTKIGEHQMALRDYGIVL 298
Cdd:COG4235    83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLL 112
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 480-571 4.27e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 55.01  E-value: 4.27e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 480 AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNS 559
Cdd:COG4235    17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96

                          90
                  ....*....|..
gi 1720372962 560 VLKKYEEAEKDF 571
Cdd:COG4235    97 QQGDYAEAIAAW 108
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 77-207 4.52e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 55.01  E-value: 4.52e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  77 KAIHILEGVIASKP-DISTYALLAKAQMKAKRIKESVRLFKKALELytfsDKGpvatsvSAECLYNLGLCYMEEGNFQMA 155
Cdd:COG4235     1 EAIARLRQALAANPnDAEGWLLLGRAYLRLGRYDEALAAYEKALRL----DPD------NADALLDLAEALLAAGDTEEA 70

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1720372962 156 FESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYL 207
Cdd:COG4235    71 EELLERALALDPDNPEALYLLGLAAFQQGDyAEAIAAWQKLLALLPADAPARL 123
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 243-375 5.99e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.81  E-value: 5.99e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 243 RGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNTLinrGLIYTELK 322
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL---GLALLKAG 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1720372962 323 QYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHY 375
Cdd:COG4783    87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 501-613 1.95e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.81  E-value: 1.95e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 501 ADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCPH 580
Cdd:COG5010    41 ELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD 120

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1720372962 581 WAALYFNRASFYVYLKKYKLAEEDLGIGLSLKP 613
Cdd:COG5010   121 NPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
523-614 2.17e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 52.09  E-value: 2.17e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 523 IYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKdFSCAMERCPHWAALYFNRASFYVYLKKYKLAE 602
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 1720372962 603 EDLGIGLSLKPD 614
Cdd:COG3063    80 AYLERALELDPS 91
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 110-323 6.35e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 55.76  E-value: 6.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 110 ESVRLFKKALELYTFSDKGPVAtsvsaeclYNL-GLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNKQNS 188
Cdd:TIGR00990 312 EAARAFEKALDLGKLGEKEAIA--------LNLrGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDK 383

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 189 IL-DFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMD 267
Cdd:TIGR00990 384 AEeDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1720372962 268 KNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDA---GENIALNTLINRGLIYTELKQ 323
Cdd:TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKetkPMYMNVLPLINKALALFQWKQ 522
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 289-444 6.95e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 52.27  E-value: 6.95e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 289 MALRDYGIVLLLDAGENIALNTLINRGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRA 368
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720372962 369 IKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNP 444
Cdd:COG5010    81 LQLDPNNPELYYNLALLYSRSGDKD---EAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1-176 9.14e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.38  E-value: 9.14e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962   1 MQLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMksydlakftiyqvaemnkgiiemspiqealiysfcENHDKAIH 80
Cdd:COG3914    89 QALGRYEEALALYRRALALNPDNAEALFNLGNLLLAL-----------------------------------GRLEEALA 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  81 ILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELYTFsdkgpvatsvSAECLYNLGLCYMEEGNFQMAFESF 159
Cdd:COG3914   134 ALRRALALNPDfAEAYLNLGEALRRLGRLEEAIAALRRALELDPD----------NAEALNNLGNALQDLGRLEEAIAAY 203

                         170
                  ....*....|....*..
gi 1720372962 160 TKAVKANPEFAEAFYHR 176
Cdd:COG3914   204 RRALELDPDNADAHSNL 220
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 193-301 2.17e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.73  E-value: 2.17e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 193 NRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYT 272
Cdd:COG5010    44 AAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN 123

                          90       100
                  ....*....|....*....|....*....
gi 1720372962 273 AYYNRALCYTKIGEHQMALRDYGIVLLLD 301
Cdd:COG5010   124 AYSNLAALLLSLGQDDEAKAALQRALGTS 152
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
456-546 2.44e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.01  E-value: 2.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 456 VCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQSAMAdYQAAISLNPSYSLAYFNAGNIYLHHRQFSQAS 534
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDpDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 1720372962 535 DYFSTALKFNPE 546
Cdd:COG3063    80 AYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 561-646 2.87e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.73  E-value: 2.87e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 561 LKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYN 640
Cdd:COG5010    67 LGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146


                  ....*.
gi 1720372962 641 QALDLE 646
Cdd:COG5010   147 RALGTS 152
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 89-576 3.15e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 53.45  E-value: 3.15e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  89 KPDISTYALLAKAQMK--AKRIKES------VRLFKKALELYTFS---DKGPVATSvsaeclyNLGLCYMEEGNFQMAFE 157
Cdd:TIGR00990 109 EIDESSVANLSEEERKkyAAKLKEKgnkayrNKDFNKAIKLYSKAiecKPDPVYYS-------NRAACHNALGDWEKVVE 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 158 SFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNrALTLNPKHYQAYLSRVAYYGLKgrySKAILNCNEAIKLYPES 236
Cdd:TIGR00990 182 DTTAALELDPDYSKALNRRANAYDGLGKyADALLDLT-ASCIIDGFRNEQSAQAVERLLK---KFAESKAKEILETKPEN 257

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 237 VRAYICRGVLKYYNRTyKLGITDLSTAIKMDK---NNYTAYYNRALcYTKIGE-HQMALRDYGIVLLL-DAGENIALnTL 311
Cdd:TIGR00990 258 LPSVTFVGNYLQSFRP-KPRPAGLEDSNELDEetgNGQLQLGLKSP-ESKADEsYEEAARAFEKALDLgKLGEKEAI-AL 334

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 312 INRGLIYTELKQYGFALEDFKQA-ALMSGTSVSLCQaTATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYS 390
Cdd:TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSiELDPRVTQSYIK-RASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG 413

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 391 QEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYegravvclqmsNYFAamqdi 470
Cdd:TIGR00990 414 EFA---QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVY-----------NYYG----- 474

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 471 ncaikinstaEFLTNRgviHEFmgqqQSAMADYQAAISLNPSYSLAYFN-------AGNIYLHHRQFSQASDYFSTALKF 543
Cdd:TIGR00990 475 ----------ELLLDQ---NKF----DEAIEKFDTAIELEKETKPMYMNvlplinkALALFQWKQDFIEAENLCEKALII 537

                         490       500       510
                  ....*....|....*....|....*....|...
gi 1720372962 544 NPENEYALMNRAVTNSVLKKYEEAEKDFSCAME 576
Cdd:TIGR00990 538 DPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 539-645 3.17e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 49.62  E-value: 3.17e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 539 TALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIM 618
Cdd:COG4235     8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87

                          90       100
                  ....*....|....*....|....*..
gi 1720372962 619 YNLRAQVRGKMGLIAEAMSDYNQALDL 645
Cdd:COG4235    88 LYLLGLAAFQQGDYAEAIAAWQKLLAL 114
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 387-555 3.68e-07

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 51.57  E-value: 3.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 387 MEYSQEDAMIQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAyegravvclqMSNYFAa 466
Cdd:TIGR02521  39 LGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDV----------LNNYGT- 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 467 mqdincaikinstaeFLTNRgvihefmGQQQSAMADYQAAISLN--PSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFN 544
Cdd:TIGR02521 108 ---------------FLCQQ-------GKYEQAMQQFEQAIEDPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165

                         170
                  ....*....|.
gi 1720372962 545 PENEYALMNRA 555
Cdd:TIGR02521 166 PQRPESLLELA 176
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 144-234 4.58e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.96  E-value: 4.58e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 144 LCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKL-NKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKA 222
Cdd:COG5010    62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSgDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141

                          90
                  ....*....|..
gi 1720372962 223 ILNCNEAIKLYP 234
Cdd:COG5010   142 KAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
561-646 8.58e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.47  E-value: 8.58e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 561 LKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEdLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYN 640
Cdd:COG3063     5 LGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLE 83


                  ....*.
gi 1720372962 641 QALDLE 646
Cdd:COG3063    84 RALELD 89
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1-166 1.43e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.11  E-value: 1.43e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962   1 MQLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKFTIYQVAEMNKGIIEMSpIQEALIYSFCENHDKAIH 80
Cdd:COG2956   121 EQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARAL-LLLAELYLEQGDYEEAIA 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  81 ILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELYTFSDKgpvatsvsaecLYNLGLCYMEEGNFQMAFESF 159
Cdd:COG2956   200 ALERALEQDPDyLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL-----------LLALADLLERKEGLEAALALL 268


                  ....*..
gi 1720372962 160 TKAVKAN 166
Cdd:COG2956   269 ERQLRRH 275
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 95-200 1.81e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.42  E-value: 1.81e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  95 YALLAKAQMKAKRIKESVRLFKKALELYtfsdkgpvatSVSAECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFY 174
Cdd:COG5010    57 ESPSDNLYNKLGDFEESLALLEQALQLD----------PNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS 126

                          90       100
                  ....*....|....*....|....*..
gi 1720372962 175 HRGLCKVKLNKQNSILD-FNRALTLNP 200
Cdd:COG5010   127 NLAALLLSLGQDDEAKAaLQRALGTSP 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 514-645 2.66e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.34  E-value: 2.66e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 514 SLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCPHWAALYFNRASFYV 593
Cdd:COG2956     8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1720372962 594 YLKKYKLAEEDLGIGLSLKPDeaimynlRAQVRGKMGLIAEAMSDYNQALDL 645
Cdd:COG2956    88 KAGLLDRAEELLEKLLELDPD-------DAEALRLLAEIYEQEGDWEKAIEV 132
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 244-437 2.85e-06

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 48.53  E-value: 2.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 244 GVLKYYNRTYKLGitdlstaikmDKNNYTAYYNRALCYTKIGEHQMALRdygivlLLDA---GENIALNTLINRGLIYTE 320
Cdd:NF040959   20 NMVNGYNRLFSLS----------DRDRAKMYRNKGISHAKKGRYDKAVR------YLEQvarIDPDDVEALYRLGVAYLK 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 321 LKQYGFALEDFKqaalmsgTSVSLCQATATCHHR-------IKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQED 393
Cdd:NF040959   84 TGQYDRAIKVLE-------KVLSLAPDHVKAAYRkgvallkIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYD 156

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1720372962 394 AMIQAqkdFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFT 437
Cdd:NF040959  157 KAIEA---FQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHFK 197
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 74-172 3.12e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.52  E-value: 3.12e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  74 NHDKAIHILEGVIASKPDiSTYA-----LLAKAQMKAKRIKESVRLFKKALELYTFSDKGPVAtsvsaecLYNLGLCYME 148
Cdd:COG1729     8 DYDEAIAAFKAFLKRYPN-SPLApdalyWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDA-------LLKLGLSYLE 79

                          90       100
                  ....*....|....*....|....
gi 1720372962 149 EGNFQMAFESFTKAVKANPEFAEA 172
Cdd:COG1729    80 LGDYDKARATLEELIKKYPDSEAA 103
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
212-302 4.01e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.55  E-value: 4.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 212 YYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGItDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMAL 291
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|.
gi 1720372962 292 RDYGIVLLLDA 302
Cdd:COG3063    80 AYLERALELDP 90
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 480-571 4.03e-06

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 49.12  E-value: 4.03e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 480 AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNS 559
Cdd:PRK11189   64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143

                          90
                  ....*....|..
gi 1720372962 560 VLKKYEEAEKDF 571
Cdd:PRK11189  144 YGGRYELAQDDL 155
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 100-209 8.99e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 44.98  E-value: 8.99e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 100 KAQMKAKRIKESVRLFKKALELYTfsdkgpvATSVSAECLYNLGLCYMEEGNFQMAFESFTKAVKANPE---FAEAFYHR 176
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKRYP-------NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKL 73

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1720372962 177 GLCKVKL-NKQNSILDFNRALTLNPKHYQAYLSR 209
Cdd:COG1729    74 GLSYLELgDYDKARATLEELIKKYPDSEAAKEAR 107
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 6-290 1.29e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.54  E-value: 1.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962   6 LKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKFTIYQVAEMNKGIIEmSPIQEALIYSFCENHDKAIHILEGV 85
Cdd:TIGR02917 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL-ALLLLADAYAVMKNYAKAITSLKRA 661

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  86 IASKPDiSTYALLAKAQ--MKAKRIKESVRLFKKALELYTFSDKGPVAtsvsaeclynLGLCYMEEGNFQMAFESFTKAV 163
Cdd:TIGR02917 662 LELKPD-NTEAQIGLAQllLAAKRTESAKKIAKSLQKQHPKAALGFEL----------EGDLYLRQKDYPAAIQAYRKAL 730

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 164 KANPEFAEAFY-HRGLCKVKlNKQNSILDFNRALTLNP-----------------------KHYQ----------AYLSR 209
Cdd:TIGR02917 731 KRAPSSQNAIKlHRALLASG-NTAEAVKTLEAWLKTHPndavlrtalaelylaqkdydkaiKHYQtvvkkapdnaVVLNN 809

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 210 VAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQM 289
Cdd:TIGR02917 810 LAWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAE 889


                  .
gi 1720372962 290 A 290
Cdd:TIGR02917 890 A 890
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 311-410 1.51e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.00  E-value: 1.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 311 LINRGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMeys 390
Cdd:COG4235    20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF--- 96

                          90       100
                  ....*....|....*....|
gi 1720372962 391 QEDAMIQAQKDFLKALHLDP 410
Cdd:COG4235    97 QQGDYAEAIAAWQKLLALLP 116
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1-169 1.71e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.80  E-value: 1.71e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962   1 MQLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAkftiyqvaemnkgiiemspiqealiysfcenhdkAIH 80
Cdd:COG4783    15 LLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEA----------------------------------IVL 60

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  81 ILEGVIASKPDISTYALLAKAQMKAKRIKESVRLFKKALELYtfsdkgpvatSVSAECLYNLGLCYMEEGNFQMAFESFT 160
Cdd:COG4783    61 LHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLD----------PEHPEAYLRLARAYRALGRPDEAIAALE 130


                  ....*....
gi 1720372962 161 KAVKANPEF 169
Cdd:COG4783   131 KALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 361-468 1.84e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.61  E-value: 1.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 361 AVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDAMIQAqkdFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGI 440
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAA---YEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERAL 78

                          90       100
                  ....*....|....*....|....*...
gi 1720372962 441 ESNPKSYLAYEGRAVVCLQMSNYFAAMQ 468
Cdd:COG4235    79 ALDPDNPEALYLLGLAAFQQGDYAEAIA 106
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 367-511 2.18e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.95  E-value: 2.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 367 RAIKINPHYVDAYIGRGNSYMEYSQEDAMIQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKS 446
Cdd:COG5010     8 DRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNN 87

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720372962 447 YLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQSAMADYQAAISLNP 511
Cdd:COG5010    88 PELYYNLALLYSRSGDKDEAKEYYEKALALSpDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
317-414 2.35e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.24  E-value: 2.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 317 IYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFfTRAIKINPHYVDAYIGRGNSYMEYSQEDami 396
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYD--- 76

                          90
                  ....*....|....*...
gi 1720372962 397 QAQKDFLKALHLDPSCLK 414
Cdd:COG3063    77 EALAYLERALELDPSALR 94
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
191-271 2.49e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.24  E-value: 2.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 191 DFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAIlNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNN 270
Cdd:COG3063    14 YYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSA 92


                  .
gi 1720372962 271 Y 271
Cdd:COG3063    93 L 93
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 136-169 2.55e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 41.28  E-value: 2.55e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1720372962  136 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPEF 169
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 530-642 3.15e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 46.70  E-value: 3.15e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 530 FSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGL 609
Cdd:PLN03088   18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGA 97

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1720372962 610 SLKPDEAIMYNLRAQVRGKmglIAEAMSDYNQA 642
Cdd:PLN03088   98 SLAPGDSRFTKLIKECDEK---IAEEEKDLVQP 127
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 494-579 3.33e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.44  E-value: 3.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 494 GQQQSAMADYQAAISLNPSYSL---AYFNAGNIYLHHRQFSQASDYFSTALKFNPENEY---ALMNRAVTNSVLKKYEEA 567
Cdd:COG1729     7 GDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYDKA 86

                          90
                  ....*....|..
gi 1720372962 568 EKDFSCAMERCP 579
Cdd:COG1729    87 RATLEELIKKYP 98
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 194-334 3.85e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.18  E-value: 3.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 194 RALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTA 273
Cdd:COG5010    11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720372962 274 YYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNtliNRGLIYTELKQYGFALEDFKQA 334
Cdd:COG5010    91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS---NLAALLLSLGQDDEAKAALQRA 148
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
423-512 4.51e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.46  E-value: 4.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 423 LQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQdINCAIKINST-AEFLTNRGVIHEFMGQQQSAMA 501
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNnAEALLNLAELLLELGDYDEALA 80

                          90
                  ....*....|.
gi 1720372962 502 DYQAAISLNPS 512
Cdd:COG3063    81 YLERALELDPS 91
TPR_1 pfam00515
Tetratricopeptide repeat;
136-169 5.64e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.48  E-value: 5.64e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1720372962 136 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPEF 169
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 357-411 9.66e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 44.93  E-value: 9.66e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1720372962 357 EFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPS 411
Cdd:cd24142    15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVE---EAREVLLRAIELDPD 66
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 141-286 1.35e-04

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 43.87  E-value: 1.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 141 NLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLnKQNSILD--FNRALTLNPKHYQAYLSRVAYYGLKGR 218
Cdd:TIGR02521  36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQL-GELEKAEdsFRRALTLNPNNGDVLNNYGTFLCQQGK 114

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 219 YSKAILNCNEAIK--LYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGE 286
Cdd:TIGR02521 115 YEQAMQQFEQAIEdpLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ 184
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 513-605 1.41e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 44.97  E-value: 1.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 513 YSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYaLMNRAVTNSVLKKYEEAEKDFSCAMERCPHWAALYFNRASFY 592
Cdd:TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVY-YSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204

                          90
                  ....*....|...
gi 1720372962 593 VYLKKYKLAEEDL 605
Cdd:TIGR00990 205 DGLGKYADALLDL 217
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 151-209 1.76e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 44.39  E-value: 1.76e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 151 NFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSR 209
Cdd:PLN03088   17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNfTEAVADANKAIELDPSLAKAYLRK 76
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 257-380 2.20e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.53  E-value: 2.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 257 ITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDaGENIALntLINRGLIYTELKQYGFALEDFKQAAL 336
Cdd:COG4235     3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD-PDNADA--LLDLAEALLAAGDTEEAEELLERALA 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1720372962 337 MSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYI 380
Cdd:COG4235    80 LDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 462-547 2.53e-04

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 42.35  E-value: 2.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 462 NYFAAMQDINCAIKI----NSTAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYlHHR--------- 528
Cdd:PRK02603   50 EYAEALENYEEALKLeedpNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY-HKRgekaeeagd 128

                          90       100
                  ....*....|....*....|....*
gi 1720372962 529 ------QFSQASDYFSTALKFNPEN 547
Cdd:PRK02603  129 qdeaeaLFDKAAEYWKQAIRLAPNN 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 59-167 2.55e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.87  E-value: 2.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  59 EMSPIQEALIYSFCENHDKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELYtfsdkgpvatSVSAE 137
Cdd:COG5010    54 FAIESPSDNLYNKLGDFEESLALLEQALQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALS----------PDNPN 123

                          90       100       110
                  ....*....|....*....|....*....|
gi 1720372962 138 CLYNLGLCYMEEGNFQMAFESFTKAVKANP 167
Cdd:COG5010   124 AYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
68-168 4.26e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.77  E-value: 4.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  68 IYSFCENHDKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRlFKKALELYtfsdkgpvatSVSAECLYNLGLCY 146
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDnADALNNLGLLLLEQGRYDEAIA-LEKALKLD----------PNNAEALLNLAELL 69

                          90       100
                  ....*....|....*....|..
gi 1720372962 147 MEEGNFQMAFESFTKAVKANPE 168
Cdd:COG3063    70 LELGDYDEALAYLERALELDPS 91
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 136-168 5.50e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.50  E-value: 5.50e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1720372962 136 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPE 168
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 221-334 5.96e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.37  E-value: 5.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 221 KAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLL 300
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1720372962 301 DAGENIALNTLinrGLIYTELKQYGFALEDFKQA 334
Cdd:COG4235    81 DPDNPEALYLL---GLAAFQQGDYAEAIAAWQKL 111
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 106-187 7.44e-04

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 41.55  E-value: 7.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 106 KRIKESVRLFKKALElytfsDKGPVATSVSAEclyNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYhrGLCKVKLNK 185
Cdd:TIGR02521 113 GKYEQAMQQFEQAIE-----DPLYPQPARSLE---NAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL--ELAELYYLR 182


                  ..
gi 1720372962 186 QN 187
Cdd:TIGR02521 183 GQ 184
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 188-268 1.29e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.94  E-value: 1.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 188 SILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMD 267
Cdd:COG5010    73 SLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152


                  .
gi 1720372962 268 K 268
Cdd:COG5010   153 P 153
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1-172 1.40e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 40.76  E-value: 1.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962   1 MQLHKLKRAVIELTRAIHLQPDAIHLYIMRGqfllmmksydlakftiyqvaemnkgiiemspiqeaLIYSFCENHDKAIH 80
Cdd:COG0457    53 LRLGRYEEALADYEQALELDPDDAEALNNLG-----------------------------------LALQALGRYEEALE 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  81 ILEGVIASKP-DISTYALLAKAQMKAKRIKESVRLFKKALELytfsdkgpvaTSVSAECLYNLGLCYMEEGNFQMAFESF 159
Cdd:COG0457    98 DYDKALELDPdDAEALYNLGLALLELGRYDEAIEAYERALEL----------DPDDADALYNLGIALEKLGRYEEALELL 167

                         170
                  ....*....|...
gi 1720372962 160 TKAVKANPEFAEA 172
Cdd:COG0457   168 EKLEAAALAALLA 180
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 309-374 1.50e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 41.07  E-value: 1.50e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720372962 309 NTLINRGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPH 374
Cdd:cd24142     1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 144-236 2.06e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.43  E-value: 2.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 144 LCYMEEGNFQMAFESFTKAVKANPE---FAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHY---QAYLSRVAYYGLK 216
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDyDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLEL 80

                          90       100
                  ....*....|....*....|
gi 1720372962 217 GRYSKAILNCNEAIKLYPES 236
Cdd:COG1729    81 GDYDKARATLEELIKKYPDS 100
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 516-547 4.91e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.11  E-value: 4.91e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1720372962  516 AYFNAGNIYLHHRQFSQASDYFSTALKFNPEN 547
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
280-373 5.44e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.69  E-value: 5.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 280 CYTKIGEHQMALRDYGIVLLLDAGENIALNtliNRGLIYTELKQYGFALEdFKQAALMSGTSVSLCQATATCHHRIKEFE 359
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALN---NLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD 76

                          90
                  ....*....|....
gi 1720372962 360 GAVEFFTRAIKINP 373
Cdd:COG3063    77 EALAYLERALELDP 90
TPR_8 pfam13181
Tetratricopeptide repeat;
136-168 5.71e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 34.68  E-value: 5.71e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1720372962 136 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPE 168
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_11 pfam13414
TPR repeat;
494-525 6.08e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.14  E-value: 6.08e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1720372962 494 GQQQSAMADYQAAISLNPSYSLAYFNAGNIYL 525
Cdd:pfam13414   8 GKYEEAIEAYKKALKLDPDNPEAYYNLGLAYY 39
TPR_12 pfam13424
Tetratricopeptide repeat;
272-334 6.10e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.21  E-value: 6.10e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720372962 272 TAYYNRALCYTKIGEHQMALRDYGIVL-----LLDAGENIALNTLINRGLIYTELKQYGFALEDFKQA 334
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALeiarrLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERA 71
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 196-378 6.33e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 38.11  E-value: 6.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 196 LTLNPKHYQAYlsrvAYY--GL----KGRYSKAILNCNEAIKLYPESvrayicrgvlkyYNRTYKLgitdlstaikmdkn 269
Cdd:PRK02603   26 LPINKKAKEAF----VYYrdGMsaqaDGEYAEALENYEEALKLEEDP------------NDRSYIL-------------- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 270 nytayYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNtliNRGLIYTelKQYGFALEDFKQAalmsgtsvslcQATA 349
Cdd:PRK02603   76 -----YNMGIIYASNGEHDKALEYYHQALELNPKQPSALN---NIAVIYH--KRGEKAEEAGDQD-----------EAEA 134

                         170       180       190
                  ....*....|....*....|....*....|
gi 1720372962 350 TchhrikeFEGAVEFFTRAIKINP-HYVDA 378
Cdd:PRK02603  135 L-------FDKAAEYWKQAIRLAPnNYIEA 157
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 493-549 6.70e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 39.15  E-value: 6.70e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1720372962 493 MGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEY 549
Cdd:cd24142    13 QGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGY 69
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
611-646 6.74e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 38.74  E-value: 6.74e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1720372962 611 LKPDEAIMYNLRAQVRGKMGLIAEAMSDYNQALDLE 646
Cdd:COG4785    68 ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD 103
TPR_12 pfam13424
Tetratricopeptide repeat;
92-168 7.50e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 35.83  E-value: 7.50e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720372962  92 ISTYALLAKAQMKAKRIKESVRLFKKALELY--TFSDKGPVAtsvsAECLYNLGLCYMEEGNFQMAFESFTKAVKANPE 168
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrLLGPDHPLT----ATTLLNLGRLYLELGRYEEALELLERALALAEK 77
ycf3 CHL00033
photosystem I assembly protein Ycf3
 483-547 8.68e-03

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 37.68  E-value: 8.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 483 LTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYlHHRQ---------------FSQASDYFSTALKFNPEN 547
Cdd:CHL00033   75 LYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC-HYRGeqaieqgdseiaeawFDQAAEYWKQAIALAPGN 153
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 96-168 8.88e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 38.76  E-value: 8.88e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720372962  96 ALLAKAQMK--AKRIKESVRLFKKALELYtfsdkgpvatSVSAECLYNLGLCYMEEGNFQMAFESFTKAVKANPE 168
Cdd:cd24142     2 ELLEKAEELldQGNFELALKFLQRALELE----------PNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
TPR_1 pfam00515
Tetratricopeptide repeat;
480-513 8.93e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.32  E-value: 8.93e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1720372962 480 AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSY 513
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
516-547 9.76e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.32  E-value: 9.76e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1720372962 516 AYFNAGNIYLHHRQFSQASDYFSTALKFNPEN 547
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 99-278 9.83e-03

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 38.32  E-value: 9.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962  99 AKAQMKAKRIKESVRLFKKALELYTFSDKGPVAtsvsaecLYNLGLCYMEEGNFQMA---FESFTKAVKANPEFAEAFYH 175
Cdd:COG4105    39 AKEALEKGDYEKAIKLFEELEPRYPGSPYAEQA-------QLMLAYAYYKQGDYEEAiaaADRFIKLYPNSPNADYAYYL 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372962 176 RGLCKVKLNK---------QNSILDFNRALTLNPK----------------HYQAYLSRVA-YYGLKGRYSKAILNCNEA 229
Cdd:COG4105   112 RGLSYYEQSPdsdrdqtstRKAIEAFQELINRYPDseyaedakkridelrdKLARKELEVArYYLKRGAYVAAINRFQNV 191

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720372962 230 IKLYPES----------VRAYicrgvlkyynrtYKLGITDLS-TAIKMDKNNY--TAYYNRA 278
Cdd:COG4105   192 LEDYPDTpaveealyllVEAY------------YALGRYDEAqDAAAVLGKNYpdSPYLKDA 241
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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