NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|568945657|ref|XP_006539990|]
View 

coiled-coil domain-containing protein 9 isoform X7 [Mus musculus]

Protein Classification

CCDC9 family protein( domain architecture ID 13487258)

CCDC9 family protein is a DUF4594 domain-containing protein similar to Homo sapiens coiled-coil domain-containing protein 9B

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
DUF4594 pfam15266
Domain of unknown function (DUF4594); This protein family is a domain of unknown function. The ...
205-373 2.33e-44

Domain of unknown function (DUF4594); This protein family is a domain of unknown function. The protein family is found in eukaryotes, and is typically between 170 and 183 amino acids in length.In humans, the gene encoding this protein lies in the position, chromosome 15 open reading frame 52.


:

Pssm-ID: 464604 [Multi-domain]  Cd Length: 177  Bit Score: 155.32  E-value: 2.33e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568945657  205 LEESERDRREGSRRHGRNWGGSDFERVRSGLEQERQGRRAGLGSGGDM-TMSMTGRERSEYLRWKQEREKIDQERLQRHR 283
Cdd:pfam15266   1 PTRARRDRAEGSRGGGRNWSGPDQMAVSSDSEQKGAREPRSPGLVGPGpTLSMTGRERWDYARWKQEREQIDLARLARHR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568945657  284 KPTGQWRREWDAEKTDGMFKDGPAPTHELSHRYDDQAWAR------PPKPPTFGEFLS----QHKAEVSSRRRRKNS-RP 352
Cdd:pfam15266  81 DAQGDWRRPWDLDKAKPMFQDGSKPRDEGPARAGSRKGPRshrklqPPPLPPDGKFLGrggqQGRPSVAPATRSKARgKE 160
                         170       180
                  ....*....|....*....|.
gi 568945657  353 QAKVAPRaysdhdnRWETREE 373
Cdd:pfam15266 161 RLTGRAR-------RWETKED 174
PRK12678 super family cl36163
transcription termination factor Rho; Provisional
16-251 1.29e-03

transcription termination factor Rho; Provisional


The actual alignment was detected with superfamily member PRK12678:

Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 41.81  E-value: 1.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568945657  16 RPSSGATRCPSPALETPSPLLPAEIEEDRKKAELEGVAVTAPRK-SRSMEKENMAVEEKSLGPSRRTPGTPRPPGASRGG 94
Cdd:PRK12678  59 RGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAeAAPAARAAAAAAAEAASAPEAAQARERRERGEAAR 138
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568945657  95 RTHPQQGGRAGVGRASQGWEDGAGEQLRGGPGGRGRRGRGRGSPHLLGAGDNSTSDRKSKEWEERRRQNIEKMNEEMEKI 174
Cdd:PRK12678 139 RGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREER 218
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568945657 175 AEYERNQREGvlepnpvrnfldDPRRRGGPLEESERDRREGSRRHGRNWGGSDFERVRSGLEQERQGRRAGLGSGGD 251
Cdd:PRK12678 219 GRRDGGDRRG------------RRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNER 283
 
Name Accession Description Interval E-value
DUF4594 pfam15266
Domain of unknown function (DUF4594); This protein family is a domain of unknown function. The ...
205-373 2.33e-44

Domain of unknown function (DUF4594); This protein family is a domain of unknown function. The protein family is found in eukaryotes, and is typically between 170 and 183 amino acids in length.In humans, the gene encoding this protein lies in the position, chromosome 15 open reading frame 52.


Pssm-ID: 464604 [Multi-domain]  Cd Length: 177  Bit Score: 155.32  E-value: 2.33e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568945657  205 LEESERDRREGSRRHGRNWGGSDFERVRSGLEQERQGRRAGLGSGGDM-TMSMTGRERSEYLRWKQEREKIDQERLQRHR 283
Cdd:pfam15266   1 PTRARRDRAEGSRGGGRNWSGPDQMAVSSDSEQKGAREPRSPGLVGPGpTLSMTGRERWDYARWKQEREQIDLARLARHR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568945657  284 KPTGQWRREWDAEKTDGMFKDGPAPTHELSHRYDDQAWAR------PPKPPTFGEFLS----QHKAEVSSRRRRKNS-RP 352
Cdd:pfam15266  81 DAQGDWRRPWDLDKAKPMFQDGSKPRDEGPARAGSRKGPRshrklqPPPLPPDGKFLGrggqQGRPSVAPATRSKARgKE 160
                         170       180
                  ....*....|....*....|.
gi 568945657  353 QAKVAPRaysdhdnRWETREE 373
Cdd:pfam15266 161 RLTGRAR-------RWETKED 174
PRK12678 PRK12678
transcription termination factor Rho; Provisional
16-251 1.29e-03

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 41.81  E-value: 1.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568945657  16 RPSSGATRCPSPALETPSPLLPAEIEEDRKKAELEGVAVTAPRK-SRSMEKENMAVEEKSLGPSRRTPGTPRPPGASRGG 94
Cdd:PRK12678  59 RGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAeAAPAARAAAAAAAEAASAPEAAQARERRERGEAAR 138
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568945657  95 RTHPQQGGRAGVGRASQGWEDGAGEQLRGGPGGRGRRGRGRGSPHLLGAGDNSTSDRKSKEWEERRRQNIEKMNEEMEKI 174
Cdd:PRK12678 139 RGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREER 218
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568945657 175 AEYERNQREGvlepnpvrnfldDPRRRGGPLEESERDRREGSRRHGRNWGGSDFERVRSGLEQERQGRRAGLGSGGD 251
Cdd:PRK12678 219 GRRDGGDRRG------------RRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNER 283
 
Name Accession Description Interval E-value
DUF4594 pfam15266
Domain of unknown function (DUF4594); This protein family is a domain of unknown function. The ...
205-373 2.33e-44

Domain of unknown function (DUF4594); This protein family is a domain of unknown function. The protein family is found in eukaryotes, and is typically between 170 and 183 amino acids in length.In humans, the gene encoding this protein lies in the position, chromosome 15 open reading frame 52.


Pssm-ID: 464604 [Multi-domain]  Cd Length: 177  Bit Score: 155.32  E-value: 2.33e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568945657  205 LEESERDRREGSRRHGRNWGGSDFERVRSGLEQERQGRRAGLGSGGDM-TMSMTGRERSEYLRWKQEREKIDQERLQRHR 283
Cdd:pfam15266   1 PTRARRDRAEGSRGGGRNWSGPDQMAVSSDSEQKGAREPRSPGLVGPGpTLSMTGRERWDYARWKQEREQIDLARLARHR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568945657  284 KPTGQWRREWDAEKTDGMFKDGPAPTHELSHRYDDQAWAR------PPKPPTFGEFLS----QHKAEVSSRRRRKNS-RP 352
Cdd:pfam15266  81 DAQGDWRRPWDLDKAKPMFQDGSKPRDEGPARAGSRKGPRshrklqPPPLPPDGKFLGrggqQGRPSVAPATRSKARgKE 160
                         170       180
                  ....*....|....*....|.
gi 568945657  353 QAKVAPRaysdhdnRWETREE 373
Cdd:pfam15266 161 RLTGRAR-------RWETKED 174
PRK12678 PRK12678
transcription termination factor Rho; Provisional
16-251 1.29e-03

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 41.81  E-value: 1.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568945657  16 RPSSGATRCPSPALETPSPLLPAEIEEDRKKAELEGVAVTAPRK-SRSMEKENMAVEEKSLGPSRRTPGTPRPPGASRGG 94
Cdd:PRK12678  59 RGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAeAAPAARAAAAAAAEAASAPEAAQARERRERGEAAR 138
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568945657  95 RTHPQQGGRAGVGRASQGWEDGAGEQLRGGPGGRGRRGRGRGSPHLLGAGDNSTSDRKSKEWEERRRQNIEKMNEEMEKI 174
Cdd:PRK12678 139 RGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREER 218
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568945657 175 AEYERNQREGvlepnpvrnfldDPRRRGGPLEESERDRREGSRRHGRNWGGSDFERVRSGLEQERQGRRAGLGSGGD 251
Cdd:PRK12678 219 GRRDGGDRRG------------RRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNER 283
PRK12678 PRK12678
transcription termination factor Rho; Provisional
20-230 2.44e-03

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 40.66  E-value: 2.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568945657  20 GATRCPSPALETPSPLLPAEIEEDRKKAELEGVAVTAPRKSRSMEKENMAVEEKSLGPSRRTPGTPRPPGASRGGRTHPQ 99
Cdd:PRK12678  77 ARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEA 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568945657 100 QGGRAGVGRASQGWEDGAGEQLRGGPGGRGRRGRGRGSPHLLGAGDNSTSDRKSKEWEERRRQNIEKMNEEMEKIAEYER 179
Cdd:PRK12678 157 RADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRR 236
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 568945657 180 NQREGVLEPNPVRNFLDDPRRRGGPLEESERDRREGSRRHGRNWGGSDFER 230
Cdd:PRK12678 237 DARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPEL 287
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH