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Conserved domains on  [gi|568917076|ref|XP_006499603|]
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sperm-associated antigen 4 protein isoform X1 [Mus musculus]

Protein Classification

SUN domain-containing protein( domain architecture ID 10543997)

SUN (Sad1-UNC-84 homology) domain-containing protein may be involved in nuclear migration, meiotic telomere tethering, and antiviral responses

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Sad1_UNC pfam07738
Sad1 / UNC-like C-terminal; The C. elegans UNC-84 protein is a nuclear envelope protein that ...
 214-346 4.41e-55

Sad1 / UNC-like C-terminal; The C. elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localizes at the spindle pole body. UNC-84 and and Sad1 share a common C-terminal region, that is often termed the SUN (Sad1 and UNC) domain. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2. The SUN domain of Sun2 has been demonstrated to be in the periplasm.


:

Pssm-ID: 400199  Cd Length: 130  Bit Score: 176.71  E-value: 4.41e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568917076  214 FWNYARPPSVILEPDVFPGNCWAFEGDKGQVVIRLPGHVQLSDITLQHPPPTVAhtggaSSAPRDFAVYGLQAD-DETEV 292
Cdd:pfam07738   1 LNYEAKPPKVILQPDYMPGPCWSFKGSRGFVVIELSEFIIVEAITLEHVEKSVF-----SSAPKDFEVSGSDRYpTTKWV 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 568917076  293 FLGKFIFDVQKSEIQTFHLQNDPPSAFPKVKIQILSNWGHPRFTCLYRVRAHGV 346
Cdd:pfam07738  76 LLGEFSYDLDGKTIQTFQLENPPDIWVKYVKLRILSNYGNEHYTCLYRFRVHGT 129
PMI_typeI_cat super family cl48665
Phosphomannose isomerase type I, catalytic domain; This entry represents the catalytic domain ...
 5-74 5.00e-04

Phosphomannose isomerase type I, catalytic domain; This entry represents the catalytic domain of Phosphomannose isomerase type I enzymes (EC 5.3.1.8) which contains a zinc-binding site. It is composed of beta-strands connected by long loops in a jelly roll conformation.


The actual alignment was detected with superfamily member pfam20511:

Pssm-ID: 466660 [Multi-domain]  Cd Length: 143  Bit Score: 39.86  E-value: 5.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568917076    5 LSAEAGASEPQWAD-----RLWRGNQPSGSSVVLEEQLNLLPILDLRQEMPtPRVSKSF---LSLLFQVLSM--VLSLAV 74
Cdd:pfam20511  22 LAKLFAYSIPSIDEdkpyaELWMGTHPKGPSKVLNGQLRDVTLDELSAELG-ELFGKRFggnLPFLFKVLSVekPLSIQV 100
 
Name Accession Description Interval E-value
Sad1_UNC pfam07738
Sad1 / UNC-like C-terminal; The C. elegans UNC-84 protein is a nuclear envelope protein that ...
 214-346 4.41e-55

Sad1 / UNC-like C-terminal; The C. elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localizes at the spindle pole body. UNC-84 and and Sad1 share a common C-terminal region, that is often termed the SUN (Sad1 and UNC) domain. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2. The SUN domain of Sun2 has been demonstrated to be in the periplasm.


Pssm-ID: 400199  Cd Length: 130  Bit Score: 176.71  E-value: 4.41e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568917076  214 FWNYARPPSVILEPDVFPGNCWAFEGDKGQVVIRLPGHVQLSDITLQHPPPTVAhtggaSSAPRDFAVYGLQAD-DETEV 292
Cdd:pfam07738   1 LNYEAKPPKVILQPDYMPGPCWSFKGSRGFVVIELSEFIIVEAITLEHVEKSVF-----SSAPKDFEVSGSDRYpTTKWV 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 568917076  293 FLGKFIFDVQKSEIQTFHLQNDPPSAFPKVKIQILSNWGHPRFTCLYRVRAHGV 346
Cdd:pfam07738  76 LLGEFSYDLDGKTIQTFQLENPPDIWVKYVKLRILSNYGNEHYTCLYRFRVHGT 129
PMI_typeI_cat pfam20511
Phosphomannose isomerase type I, catalytic domain; This entry represents the catalytic domain ...
 5-74 5.00e-04

Phosphomannose isomerase type I, catalytic domain; This entry represents the catalytic domain of Phosphomannose isomerase type I enzymes (EC 5.3.1.8) which contains a zinc-binding site. It is composed of beta-strands connected by long loops in a jelly roll conformation.


Pssm-ID: 466660 [Multi-domain]  Cd Length: 143  Bit Score: 39.86  E-value: 5.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568917076    5 LSAEAGASEPQWAD-----RLWRGNQPSGSSVVLEEQLNLLPILDLRQEMPtPRVSKSF---LSLLFQVLSM--VLSLAV 74
Cdd:pfam20511  22 LAKLFAYSIPSIDEdkpyaELWMGTHPKGPSKVLNGQLRDVTLDELSAELG-ELFGKRFggnLPFLFKVLSVekPLSIQV 100
 
Name Accession Description Interval E-value
Sad1_UNC pfam07738
Sad1 / UNC-like C-terminal; The C. elegans UNC-84 protein is a nuclear envelope protein that ...
 214-346 4.41e-55

Sad1 / UNC-like C-terminal; The C. elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localizes at the spindle pole body. UNC-84 and and Sad1 share a common C-terminal region, that is often termed the SUN (Sad1 and UNC) domain. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2. The SUN domain of Sun2 has been demonstrated to be in the periplasm.


Pssm-ID: 400199  Cd Length: 130  Bit Score: 176.71  E-value: 4.41e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568917076  214 FWNYARPPSVILEPDVFPGNCWAFEGDKGQVVIRLPGHVQLSDITLQHPPPTVAhtggaSSAPRDFAVYGLQAD-DETEV 292
Cdd:pfam07738   1 LNYEAKPPKVILQPDYMPGPCWSFKGSRGFVVIELSEFIIVEAITLEHVEKSVF-----SSAPKDFEVSGSDRYpTTKWV 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 568917076  293 FLGKFIFDVQKSEIQTFHLQNDPPSAFPKVKIQILSNWGHPRFTCLYRVRAHGV 346
Cdd:pfam07738  76 LLGEFSYDLDGKTIQTFQLENPPDIWVKYVKLRILSNYGNEHYTCLYRFRVHGT 129
PMI_typeI_cat pfam20511
Phosphomannose isomerase type I, catalytic domain; This entry represents the catalytic domain ...
 5-74 5.00e-04

Phosphomannose isomerase type I, catalytic domain; This entry represents the catalytic domain of Phosphomannose isomerase type I enzymes (EC 5.3.1.8) which contains a zinc-binding site. It is composed of beta-strands connected by long loops in a jelly roll conformation.


Pssm-ID: 466660 [Multi-domain]  Cd Length: 143  Bit Score: 39.86  E-value: 5.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568917076    5 LSAEAGASEPQWAD-----RLWRGNQPSGSSVVLEEQLNLLPILDLRQEMPtPRVSKSF---LSLLFQVLSM--VLSLAV 74
Cdd:pfam20511  22 LAKLFAYSIPSIDEdkpyaELWMGTHPKGPSKVLNGQLRDVTLDELSAELG-ELFGKRFggnLPFLFKVLSVekPLSIQV 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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