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Conserved domains on  [gi|302761430|ref|XP_002964137|]
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spermidine synthase 2 [Selaginella moellendorffii]

Protein Classification

spermidine/spermine synthase family protein( domain architecture ID 10010775)

spermidine/spermine synthase family protein similar to spermidine synthase, an aminopropyltransferase that transfers aminopropyl groups from decarboxylated S-adenosylmethionine to putrescine forming sperrmidine

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN02366 PLN02366
spermidine synthase
 1-310 0e+00

spermidine synthase


:

Pssm-ID: 215208 [Multi-domain]  Cd Length: 308  Bit Score: 505.72  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430   1 MDGGVSSSNKSSQIMAGWFSEINRMWPGEALSLQVDKIVFQGKSEFQDVLVFESRSHGRVLVLDGVIQLSERDECSYQEM 80
Cdd:PLN02366   1 AAAPESEAKCHSTVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430  81 ITHLPLCSISNPTKVLVVGGGDGGVLRELARYPSIERIDLCELDKMVIDVAKEYFPGLACGFDNPVVTLHIGDGVSFVKN 160
Cdd:PLN02366  81 ITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430 161 APPETYDAILIDSTDPDGPAKELFEVPFYQAVARALRPRGVMCALSESPWLNIQTVKNHLDVCRQVFKGSVRFAWTTVPT 240
Cdd:PLN02366 161 APEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPT 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 302761430 241 YPSGVIGLVLCSKE--AIDFEKPVVSDKALGtmqlGGARLKHPLKYYNSALHASALCLPEFAKNVLTVKERE 310
Cdd:PLN02366 241 YPSGVIGFVLCSKEgpAVDFKHPVNPIDKLE----GAGKAKRPLKFYNSEVHRAAFCLPSFAKRELESLLTS 308
 
Name Accession Description Interval E-value
PLN02366 PLN02366
spermidine synthase
 1-310 0e+00

spermidine synthase


Pssm-ID: 215208 [Multi-domain]  Cd Length: 308  Bit Score: 505.72  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430   1 MDGGVSSSNKSSQIMAGWFSEINRMWPGEALSLQVDKIVFQGKSEFQDVLVFESRSHGRVLVLDGVIQLSERDECSYQEM 80
Cdd:PLN02366   1 AAAPESEAKCHSTVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430  81 ITHLPLCSISNPTKVLVVGGGDGGVLRELARYPSIERIDLCELDKMVIDVAKEYFPGLACGFDNPVVTLHIGDGVSFVKN 160
Cdd:PLN02366  81 ITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430 161 APPETYDAILIDSTDPDGPAKELFEVPFYQAVARALRPRGVMCALSESPWLNIQTVKNHLDVCRQVFKGSVRFAWTTVPT 240
Cdd:PLN02366 161 APEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPT 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 302761430 241 YPSGVIGLVLCSKE--AIDFEKPVVSDKALGtmqlGGARLKHPLKYYNSALHASALCLPEFAKNVLTVKERE 310
Cdd:PLN02366 241 YPSGVIGFVLCSKEgpAVDFKHPVNPIDKLE----GAGKAKRPLKFYNSEVHRAAFCLPSFAKRELESLLTS 308
speE TIGR00417
spermidine synthase; the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine ...
 18-299 3.21e-86

spermidine synthase; the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. [Central intermediary metabolism, Polyamine biosynthesis]


Pssm-ID: 188048 [Multi-domain]  Cd Length: 271  Bit Score: 260.05  E-value: 3.21e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430   18 WFSEINRMwpGEALSLQVDKIVFQGKSEFQDVLVFESRSHGRVLVLDGVIQLSERDECSYQEMITHLPLCSISNPTKVLV 97
Cdd:TIGR00417   1 WFTEYHDK--NFGLTMKVDKVLYHEKSEFQDLEIFETEAFGNVLVLDGVVQTTERDEFIYHEMITHVPLFTHPNPKHVLV 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430   98 VGGGDGGVLRELARYPSIERIDLCELDKMVIDVAKEYFPGLACGFDNPVVTLHIGDGVSFVKNApPETYDAILIDSTDPD 177
Cdd:TIGR00417  79 IGGGDGGVLREVLKHKSVESATLVDIDEKVIELSRKYLPNLAGSYDDPRVKLVIDDGFKFLADT-ENTFDVIIVDSTDPV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430  178 GPAKELFEVPFYQAVARALRPRGVMCALSESPWLNIQTVKNHLDVCRQVFKgSVRFAWTTVPTYPSGVIGLVLCSKEA-- 255
Cdd:TIGR00417 158 GPAETLFTKEFYELLKKALNPDGIFVAQSESPWLQLELIIDLKRKLKEAFP-ITEYYTAAIPTYPSGLWTFTIASKNKyr 236

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 302761430  256 ---IDFEKPVVSDKALGTmqlggarlkhplKYYNSALHASALCLPEF 299
Cdd:TIGR00417 237 pleVEIRRIKFEAEDGKT------------KYYNPDIHKAAFVLPKW 271
Spermine_synth pfam01564
Spermine/spermidine synthase domain; Spermine and spermidine are polyamines. This family ...
 74-257 3.34e-65

Spermine/spermidine synthase domain; Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyzes the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.


Pssm-ID: 396237 [Multi-domain]  Cd Length: 183  Bit Score: 203.32  E-value: 3.34e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430   74 ECSYQEMITHLPLCSISNPTKVLVVGGGDGGVLRELARYPSIERIDLCELDKMVIDVAKEYFPGLACGFDNPVVTLHIGD 153
Cdd:pfam01564   1 EFIYHEMIAHVPLCSHPNPKKVLIIGGGDGGVLREVVKHPSVEKITLVDIDEKVIDFSKKFLPSLAIGFQDPRVKVVIGD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430  154 GVSFVKNApPETYDAILIDSTDPDGPAKELFEVPFYQAVARALRPRGVMCALSESPWLNIQTVKNHLDVCRQVFKgSVRF 233
Cdd:pfam01564  81 GFKFLKDY-LNTFDVIIVDSTDPVGPAENLFSKPFFDLLKKALKEDGVFITQAESPWLHLELIINILKNGKQVFP-VVMP 158

                         170       180
                  ....*....|....*....|....
gi 302761430  234 AWTTVPTYPSGVIGLVLCSKEAID 257
Cdd:pfam01564 159 YVATIPTYPSGGWGFTVCSKNPLK 182
SpeE COG0421
Spermidine synthase (polyamine aminopropyltransferase) [Amino acid transport and metabolism];
56-248 5.31e-58

Spermidine synthase (polyamine aminopropyltransferase) [Amino acid transport and metabolism];


Pssm-ID: 440190 [Multi-domain]  Cd Length: 195  Bit Score: 185.42  E-value: 5.31e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430  56 SHGRVLVLDGVIQLS-ERDECSYQEMITHLPLCSISNPTKVLVVGGGDGGVLRELARYPSIERIDLCELDKMVIDVAKEY 134
Cdd:COG0421    1 EDGRVLVLDGVVQSTmELDEFEYHEMMAHVPLLFHPNPKRVLIIGGGDGGLARELLKHPPVERVDVVEIDPEVVELAREY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430 135 FPGLACGFDNPVVTLHIGDGVSFVKNApPETYDAILIDSTDPDGPAKELFEVPFYQAVARALRPRGVMCALSESPWLNIQ 214
Cdd:COG0421   81 FPLLAPAFDDPRLRVVIGDGRAFLREA-EESYDVIIVDLTDPVGPAEGLFTREFYEDCRRALKPGGVLVVNLGSPFYGLD 159

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 302761430 215 TVKNHLDVCRQVFKGsVRFAWTTVPTYPSG---VIGL 248
Cdd:COG0421  160 LLRRVLATLREVFPH-VVLYAAPVPTYGGGnvfLLAL 195
 
Name Accession Description Interval E-value
PLN02366 PLN02366
spermidine synthase
 1-310 0e+00

spermidine synthase


Pssm-ID: 215208 [Multi-domain]  Cd Length: 308  Bit Score: 505.72  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430   1 MDGGVSSSNKSSQIMAGWFSEINRMWPGEALSLQVDKIVFQGKSEFQDVLVFESRSHGRVLVLDGVIQLSERDECSYQEM 80
Cdd:PLN02366   1 AAAPESEAKCHSTVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430  81 ITHLPLCSISNPTKVLVVGGGDGGVLRELARYPSIERIDLCELDKMVIDVAKEYFPGLACGFDNPVVTLHIGDGVSFVKN 160
Cdd:PLN02366  81 ITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430 161 APPETYDAILIDSTDPDGPAKELFEVPFYQAVARALRPRGVMCALSESPWLNIQTVKNHLDVCRQVFKGSVRFAWTTVPT 240
Cdd:PLN02366 161 APEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPT 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 302761430 241 YPSGVIGLVLCSKE--AIDFEKPVVSDKALGtmqlGGARLKHPLKYYNSALHASALCLPEFAKNVLTVKERE 310
Cdd:PLN02366 241 YPSGVIGFVLCSKEgpAVDFKHPVNPIDKLE----GAGKAKRPLKFYNSEVHRAAFCLPSFAKRELESLLTS 308
PRK00811 PRK00811
polyamine aminopropyltransferase;
15-304 4.66e-95

polyamine aminopropyltransferase;


Pssm-ID: 234843 [Multi-domain]  Cd Length: 283  Bit Score: 283.20  E-value: 4.66e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430  15 MAGWFSEinRMWPGEALSLQVDKIVFQGKSEFQDVLVFESRSHGRVLVLDGVIQLSERDECSYQEMITHLPLCSISNPTK 94
Cdd:PRK00811   2 MELWFTE--TLTDNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKR 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430  95 VLVVGGGDGGVLRELARYPSIERIDLCELDKMVIDVAKEYFPGLACG-FDNPVVTLHIGDGVSFVKNaPPETYDAILIDS 173
Cdd:PRK00811  80 VLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGaYDDPRVELVIGDGIKFVAE-TENSFDVIIVDS 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430 174 TDPDGPAKELFEVPFYQAVARALRPRGVMCALSESPWLNIQTVKNHLDVCRQVFKgSVRFAWTTVPTYPSGVIGLVLCSK 253
Cdd:PRK00811 159 TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFP-IVRPYQAAIPTYPSGLWSFTFASK 237

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 302761430 254 EA-IDFEKPVVSDKALgtmqlggARLKHPLKYYNSALHASALCLPEFAKNVL 304
Cdd:PRK00811 238 NDdLKFLPLDVIEARF-------AERGIKTRYYNPELHKAAFALPQFVKDAL 282
speE TIGR00417
spermidine synthase; the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine ...
 18-299 3.21e-86

spermidine synthase; the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. [Central intermediary metabolism, Polyamine biosynthesis]


Pssm-ID: 188048 [Multi-domain]  Cd Length: 271  Bit Score: 260.05  E-value: 3.21e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430   18 WFSEINRMwpGEALSLQVDKIVFQGKSEFQDVLVFESRSHGRVLVLDGVIQLSERDECSYQEMITHLPLCSISNPTKVLV 97
Cdd:TIGR00417   1 WFTEYHDK--NFGLTMKVDKVLYHEKSEFQDLEIFETEAFGNVLVLDGVVQTTERDEFIYHEMITHVPLFTHPNPKHVLV 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430   98 VGGGDGGVLRELARYPSIERIDLCELDKMVIDVAKEYFPGLACGFDNPVVTLHIGDGVSFVKNApPETYDAILIDSTDPD 177
Cdd:TIGR00417  79 IGGGDGGVLREVLKHKSVESATLVDIDEKVIELSRKYLPNLAGSYDDPRVKLVIDDGFKFLADT-ENTFDVIIVDSTDPV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430  178 GPAKELFEVPFYQAVARALRPRGVMCALSESPWLNIQTVKNHLDVCRQVFKgSVRFAWTTVPTYPSGVIGLVLCSKEA-- 255
Cdd:TIGR00417 158 GPAETLFTKEFYELLKKALNPDGIFVAQSESPWLQLELIIDLKRKLKEAFP-ITEYYTAAIPTYPSGLWTFTIASKNKyr 236

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 302761430  256 ---IDFEKPVVSDKALGTmqlggarlkhplKYYNSALHASALCLPEF 299
Cdd:TIGR00417 237 pleVEIRRIKFEAEDGKT------------KYYNPDIHKAAFVLPKW 271
Spermine_synth pfam01564
Spermine/spermidine synthase domain; Spermine and spermidine are polyamines. This family ...
 74-257 3.34e-65

Spermine/spermidine synthase domain; Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyzes the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.


Pssm-ID: 396237 [Multi-domain]  Cd Length: 183  Bit Score: 203.32  E-value: 3.34e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430   74 ECSYQEMITHLPLCSISNPTKVLVVGGGDGGVLRELARYPSIERIDLCELDKMVIDVAKEYFPGLACGFDNPVVTLHIGD 153
Cdd:pfam01564   1 EFIYHEMIAHVPLCSHPNPKKVLIIGGGDGGVLREVVKHPSVEKITLVDIDEKVIDFSKKFLPSLAIGFQDPRVKVVIGD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430  154 GVSFVKNApPETYDAILIDSTDPDGPAKELFEVPFYQAVARALRPRGVMCALSESPWLNIQTVKNHLDVCRQVFKgSVRF 233
Cdd:pfam01564  81 GFKFLKDY-LNTFDVIIVDSTDPVGPAENLFSKPFFDLLKKALKEDGVFITQAESPWLHLELIINILKNGKQVFP-VVMP 158

                         170       180
                  ....*....|....*....|....
gi 302761430  234 AWTTVPTYPSGVIGLVLCSKEAID 257
Cdd:pfam01564 159 YVATIPTYPSGGWGFTVCSKNPLK 182
SpeE COG0421
Spermidine synthase (polyamine aminopropyltransferase) [Amino acid transport and metabolism];
56-248 5.31e-58

Spermidine synthase (polyamine aminopropyltransferase) [Amino acid transport and metabolism];


Pssm-ID: 440190 [Multi-domain]  Cd Length: 195  Bit Score: 185.42  E-value: 5.31e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430  56 SHGRVLVLDGVIQLS-ERDECSYQEMITHLPLCSISNPTKVLVVGGGDGGVLRELARYPSIERIDLCELDKMVIDVAKEY 134
Cdd:COG0421    1 EDGRVLVLDGVVQSTmELDEFEYHEMMAHVPLLFHPNPKRVLIIGGGDGGLARELLKHPPVERVDVVEIDPEVVELAREY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430 135 FPGLACGFDNPVVTLHIGDGVSFVKNApPETYDAILIDSTDPDGPAKELFEVPFYQAVARALRPRGVMCALSESPWLNIQ 214
Cdd:COG0421   81 FPLLAPAFDDPRLRVVIGDGRAFLREA-EESYDVIIVDLTDPVGPAEGLFTREFYEDCRRALKPGGVLVVNLGSPFYGLD 159

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 302761430 215 TVKNHLDVCRQVFKGsVRFAWTTVPTYPSG---VIGL 248
Cdd:COG0421  160 LLRRVLATLREVFPH-VVLYAAPVPTYGGGnvfLLAL 195
COG4262 COG4262
Predicted spermidine synthase with an N-terminal membrane domain [General function prediction ...
 36-209 8.08e-34

Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only];


Pssm-ID: 443404 [Multi-domain]  Cd Length: 426  Bit Score: 128.44  E-value: 8.08e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430  36 DKIVFQGKSEFQDVLVFESRSHgRVLVLDGVIQLSERDECSYQEMITHLPLCSISNPTKVLVVGGGDGGVLRELARYPSI 115
Cdd:COG4262  232 DPVVYSEQTPYQRIVVTRDKDD-RRLYLNGNLQFSSLDEYRYHEALVHPPMAAHPRPRRVLVLGGGDGLAAREVLKYPDV 310

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430 116 ERIDLCELDKMVIDVAKE--YFPGLACG-FDNPVVTLHIGDGVSFVKNaPPETYDAILIDSTDPD--GPAKeLFEVPFYQ 190
Cdd:COG4262  311 ESVTLVDLDPEVTDLAKTnpFLRELNGGaLNDPRVTVVNADAFQFLRE-TDEKYDVIIVDLPDPSnfSLGK-LYSVEFYR 388

                        170
                 ....*....|....*....
gi 302761430 191 AVARALRPRGVMCALSESP 209
Cdd:COG4262  389 LVRRHLAPGGVLVVQATSP 407
PLN02823 PLN02823
spermine synthase
 18-297 1.51e-32

spermine synthase


Pssm-ID: 178418 [Multi-domain]  Cd Length: 336  Bit Score: 123.25  E-value: 1.51e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430  18 WFSEinRMWPGEALSLQVDKIVFQGKSEFQDVLVFESRSHGRVLVLDGVIQLSERDECSYQEMITHLPLCSISNPTKVLV 97
Cdd:PLN02823  32 WYEE--EIEDDLRWSYAVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQSAEADEFVYHESLVHPALLHHPNPKTVFI 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430  98 VGGGDGGVLRELARYPSIERIDLCELDKMVIDVAKEYFPGLACGFDNPVVTLHIGDGVSFVkNAPPETYDAILIDSTDP- 176
Cdd:PLN02823 110 MGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL-EKRDEKFDVIIGDLADPv 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430 177 -DGPAKELFEVPFYQ-AVARALRPRGVM-----CALSESPWLNIQTVKNHLdvcRQVFKGSVRFAwTTVPTYPSgVIGLV 249
Cdd:PLN02823 189 eGGPCYQLYTKSFYErIVKPKLNPGGIFvtqagPAGILTHKEVFSSIYNTL---RQVFKYVVPYT-AHVPSFAD-TWGWV 263

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 302761430 250 LCSKEAIDFEKPVVSDKALgtmqlgGARLKHPLKYYNSALHASALCLP 297
Cdd:PLN02823 264 MASDHPFADLSAEELDSRI------KERIDGELKYLDGETFSSAFALN 305
PRK03612 PRK03612
polyamine aminopropyltransferase;
36-210 1.33e-21

polyamine aminopropyltransferase;


Pssm-ID: 235139 [Multi-domain]  Cd Length: 521  Bit Score: 94.90  E-value: 1.33e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430  36 DKIVFQGKSEFQDVLVFESRSHGRV---LVLDGVIQLSERDECSYQEMITHLPLCSISNPTKVLVVGGGDGGVLRELARY 112
Cdd:PRK03612 239 DPVVYAEQTPYQRIVVTRRGNGRGPdlrLYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRVLVLGGGDGLALREVLKY 318

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430 113 PSIERIDLCELDKMVIDVAKEYfPGLAC----GFDNPVVTLHIGDGVSFVKNApPETYDAILIDSTDPDGPA--KeLFEV 186
Cdd:PRK03612 319 PDVEQVTLVDLDPAMTELARTS-PALRAlnggALDDPRVTVVNDDAFNWLRKL-AEKFDVIIVDLPDPSNPAlgK-LYSV 395

                        170       180
                 ....*....|....*....|....
gi 302761430 187 PFYQAVARALRPRGVMCALSESPW 210
Cdd:PRK03612 396 EFYRLLKRRLAPDGLLVVQSTSPY 419
Spermine_synt_N pfam17284
Spermidine synthase tetramerization domain; This domain represents the N-terminal ...
 17-71 2.07e-19

Spermidine synthase tetramerization domain; This domain represents the N-terminal tetramerization domain from spermidine synthase.


Pssm-ID: 407397 [Multi-domain]  Cd Length: 53  Bit Score: 80.01  E-value: 2.07e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 302761430   17 GWFSEINRmwPGEALSLQVDKIVFQGKSEFQDVLVFESRSHGRVLVLDGVIQLSE 71
Cdd:pfam17284   1 GWFTEIHD--LGQALEYKVEKVLYDEKSEYQDIEIFESKTFGNVLVLDGVVQLTE 53
speE PRK01581
polyamine aminopropyltransferase;
38-209 7.44e-14

polyamine aminopropyltransferase;


Pssm-ID: 234961 [Multi-domain]  Cd Length: 374  Bit Score: 71.53  E-value: 7.44e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430  38 IVFQGKSEFQDVLVFESrSHGRvLVLDGVIQLSERDECSYQEMITHLPLCSISNPTKVLVVGGGDGGVLRELARYPSIER 117
Cdd:PRK01581  99 NLFAEKSNYQNINLLQV-SDIR-LYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLH 176

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430 118 IDLCELDKMVIDVAKEyFPGLAC----GFDNPVVTLHIGDGVSFVkNAPPETYDAILIDSTDpdgPAKE----LFEVPFY 189
Cdd:PRK01581 177 VDLVDLDGSMINMARN-VPELVSlnksAFFDNRVNVHVCDAKEFL-SSPSSLYDVIIIDFPD---PATEllstLYTSELF 251

                        170       180
                 ....*....|....*....|
gi 302761430 190 QAVARALRPRGVMCALSESP 209
Cdd:PRK01581 252 ARIATFLTEDGAFVCQSNSP 271
TrmR COG4122
tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; ...
 117-204 2.92e-07

tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; tRNA 5-hydroxyU34 O-methylase TrmR/YrrM is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 443298  Cd Length: 173  Bit Score: 49.80  E-value: 2.92e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430 117 RIDLCELDKMVIDVAKEYF--PGLAcgfdnPVVTLHIGDGVSFVKNAPPETYDAILIDStdpdgpAKELFeVPFYQAVAR 194
Cdd:COG4122   43 RLTTIEIDPERAAIARENFarAGLA-----DRIRLILGDALEVLPRLADGPFDLVFIDA------DKSNY-PDYLELALP 110

                         90
                 ....*....|
gi 302761430 195 ALRPRGVMCA 204
Cdd:COG4122  111 LLRPGGLIVA 120
COG2521 COG2521
Predicted archaeal methyltransferase [General function prediction only];
121-202 1.73e-06

Predicted archaeal methyltransferase [General function prediction only];


Pssm-ID: 442011 [Multi-domain]  Cd Length: 285  Bit Score: 48.75  E-value: 1.73e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430 121 CELDKMVIDVAK--EYFPGLAcgfdNPVVTLHIGDGVSFVKNAPPETYDAILidsTDPdgP----AKELFEVPFYQAVAR 194
Cdd:COG2521  161 VEKDPNVLELAElnPWSRELA----NERIKIILGDASEVIKTFPDESFDAII---HDP--PrfslAGELYSLEFYRELYR 231


                 ....*...
gi 302761430 195 ALRPRGVM 202
Cdd:COG2521  232 VLKPGGRL 239
PRK04457 PRK04457
polyamine aminopropyltransferase;
122-244 1.74e-05

polyamine aminopropyltransferase;


Pssm-ID: 179854 [Multi-domain]  Cd Length: 262  Bit Score: 45.42  E-value: 1.74e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430 122 ELDKMVIDVAKEYF--PglacgFDNPVVTLHIGDGVSFVKnAPPETYDAILIDSTDPDGPAKELFEVPFYQAVARALRPR 199
Cdd:PRK04457  97 EINPQVIAVARNHFelP-----ENGERFEVIEADGAEYIA-VHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSD 170

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 302761430 200 GVmcaLSESPWLNIQTVKNHLDVCRQVFKGSVrfawTTVPTYPSG 244
Cdd:PRK04457 171 GI---FVVNLWSRDKRYDRYLERLESSFEGRV----LELPAESHG 208
DRE2_N pfam16803
Fe-S cluster assembly protein DRE2 N-terminus; This is the N-terminal domain of the fungal ...
 143-209 1.23e-04

Fe-S cluster assembly protein DRE2 N-terminus; This is the N-terminal domain of the fungal Fe-S cluster assembly protein DRE2.


Pssm-ID: 435591  Cd Length: 129  Bit Score: 41.02  E-value: 1.23e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 302761430  143 DNPVVTLHIGDGVS--FVkNAPPETYDAILIdSTDPDGPAKELFEVPFYQAVARALRPRGVMCALSESP 209
Cdd:pfam16803  27 ARSSTDQQMIDRLAagLV-SLPANTYDLILY-LTPEDAPDSLLFPRKLISVLFDALKPGGKLRGQDGTF 93
speE PRK00536
spermidine synthase; Provisional
 35-304 7.63e-04

spermidine synthase; Provisional


Pssm-ID: 134311 [Multi-domain]  Cd Length: 262  Bit Score: 40.61  E-value: 7.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430  35 VDKIVFQGKSEFQDVLVFESRSHGRVLVLDGviQLSERDECSYQ-EMITHLPLCSISNPTKVLVVGGGDGGVLRELARYP 113
Cdd:PRK00536  17 IEAKLLDVRSEHNILEIFKSKDFGEIAMLNK--QLLFKNFLHIEsELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYD 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430 114 SieRIDLCELDKMVIDVAKEYFPGLACGFDNPVVTLhigdgVSFVKNAPPETYDAILIDSTdpdgPAKELFEvpfyqAVA 193
Cdd:PRK00536  95 T--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTH-----AKQLLDLDIKKYDLIICLQE----PDIHKID-----GLK 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302761430 194 RALRPRGVMCALSESPWLNIQTVKNHLDVCRQVFKGSVRFawtTVPTYPSGVIGLVLCSKEAidfekpvvsdKALGTMQL 273
Cdd:PRK00536 159 RMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPF---VAPLRILSNKGYIYASFKT----------HPLKDLML 225

                        250       260       270
                 ....*....|....*....|....*....|.
gi 302761430 274 GGARLKHPLKYYNSALHASALCLPEFAKNVL 304
Cdd:PRK00536 226 QKIEALKSVRYYNEDIHRAAFALPKNLQEVF 256
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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