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Conserved domains on  [gi|499771407|ref|WP_011452141|]
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COQ9 family protein [Neorickettsia sennetsu]

Protein Classification

diverge_rpsU family protein( domain architecture ID 11494201)

diverge_rpsU family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
diverge_rpsU TIGR02396
rpsU-divergently transcribed protein; This uncharacterized protein is found in a number of ...
 6-188 2.31e-70

rpsU-divergently transcribed protein; This uncharacterized protein is found in a number of Alphaproteobacteria and, with N-terminal regions long enough to be transit peptides, in eukaryotes. This phylogeny suggests mitochondrial derivation. In several Alphaproteobacteria, the gene for this protein is encoded divergently from rpsU, the gene for ribosomal protein S21. S21 is unusual in being encoded outside the usual long ribosomal protein operons, but rather in contexts that suggest regulation of the initiation of protein translation. [Unknown function, General]


:

Pssm-ID: 274110  Cd Length: 185  Bit Score: 211.84  E-value: 2.31e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499771407    6 FVKLATKFVEVVHFMGLNYSALLFAAKETQTEDFLYRYN--ENILTFLECFEDYVT---EKALLCSDYTVGGVSQKIESV 80
Cdd:TIGR02396   1 KAKLLDAALEHVPFLGWTDEALLLAARDLGYSDSLPGLLppEGAADLIEFFEDYCDtalLEALKSSDLEGLKVREKIELA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499771407   81 LWNRALVYSEfkhYRQFIKAKFCFVLKPGNSIGSLRCSFSLSDSLWHAIGDIATGFSFYSKRATLMALNSLFMAKFADDY 160
Cdd:TIGR02396  81 VWIRLKMVIP---IIQHLPQALAFLAQPQNLALSLRLLAELSDAIWYLAGDKSTDFNWYTKRAILSGVYSSTELFMIQDK 157

                         170       180
                  ....*....|....*....|....*...
gi 499771407  161 SDGFEKSRDFLRKRIKNIVVLARIKARL 188
Cdd:TIGR02396 158 SEGFEDTWSFLDSRIKNAVKLQKIKARL 185
 
Name Accession Description Interval E-value
diverge_rpsU TIGR02396
rpsU-divergently transcribed protein; This uncharacterized protein is found in a number of ...
 6-188 2.31e-70

rpsU-divergently transcribed protein; This uncharacterized protein is found in a number of Alphaproteobacteria and, with N-terminal regions long enough to be transit peptides, in eukaryotes. This phylogeny suggests mitochondrial derivation. In several Alphaproteobacteria, the gene for this protein is encoded divergently from rpsU, the gene for ribosomal protein S21. S21 is unusual in being encoded outside the usual long ribosomal protein operons, but rather in contexts that suggest regulation of the initiation of protein translation. [Unknown function, General]


Pssm-ID: 274110  Cd Length: 185  Bit Score: 211.84  E-value: 2.31e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499771407    6 FVKLATKFVEVVHFMGLNYSALLFAAKETQTEDFLYRYN--ENILTFLECFEDYVT---EKALLCSDYTVGGVSQKIESV 80
Cdd:TIGR02396   1 KAKLLDAALEHVPFLGWTDEALLLAARDLGYSDSLPGLLppEGAADLIEFFEDYCDtalLEALKSSDLEGLKVREKIELA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499771407   81 LWNRALVYSEfkhYRQFIKAKFCFVLKPGNSIGSLRCSFSLSDSLWHAIGDIATGFSFYSKRATLMALNSLFMAKFADDY 160
Cdd:TIGR02396  81 VWIRLKMVIP---IIQHLPQALAFLAQPQNLALSLRLLAELSDAIWYLAGDKSTDFNWYTKRAILSGVYSSTELFMIQDK 157

                         170       180
                  ....*....|....*....|....*...
gi 499771407  161 SDGFEKSRDFLRKRIKNIVVLARIKARL 188
Cdd:TIGR02396 158 SEGFEDTWSFLDSRIKNAVKLQKIKARL 185
COQ9 pfam08511
COQ9; COQ9 is an enzyme that is required for the biosynthesis of coenzyme Q. It may either ...
 108-179 3.27e-22

COQ9; COQ9 is an enzyme that is required for the biosynthesis of coenzyme Q. It may either catalyze a reaction in the coenzyme Q biosynthetic pathway or have a regulatory role.


Pssm-ID: 462499  Cd Length: 73  Bit Score: 85.29  E-value: 3.27e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499771407  108 PGNSIGSLRCSFSLSDSLWHAIGDIATGFSFYSKRATLMALNSLFMAKFADDYSDGFEKSRDFLRKRIKNIV 179
Cdd:pfam08511   1 PQNAPTSLKELWRLADDIWYLAGDKSTDFNWYTKRATLSGIYASTELYMLQDKSPDFEDTWEFLDRRIDDVM 72
COG5590 COG5590
Ubiquinone biosynthesis protein COQ9 [Coenzyme transport and metabolism];
108-188 7.56e-17

Ubiquinone biosynthesis protein COQ9 [Coenzyme transport and metabolism];


Pssm-ID: 444329 [Multi-domain]  Cd Length: 214  Bit Score: 74.96  E-value: 7.56e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499771407 108 PGNSIGSLRCSFSLSDSLWHAIGDIATGFSFYSKRATLMALNSLFMAKFADDYSDGFEKSRDFLRKRIKNIVVLARIKAR 187
Cdd:COG5590  112 PQNAALGAKLLWRTADAIWRAAGDTSTDFNWYTKRATLAGVYSSTLLYWLGDDSEDHADTWAFLDRRIDNVMRFEKLKAR 191


                 .
gi 499771407 188 L 188
Cdd:COG5590  192 V 192
 
Name Accession Description Interval E-value
diverge_rpsU TIGR02396
rpsU-divergently transcribed protein; This uncharacterized protein is found in a number of ...
 6-188 2.31e-70

rpsU-divergently transcribed protein; This uncharacterized protein is found in a number of Alphaproteobacteria and, with N-terminal regions long enough to be transit peptides, in eukaryotes. This phylogeny suggests mitochondrial derivation. In several Alphaproteobacteria, the gene for this protein is encoded divergently from rpsU, the gene for ribosomal protein S21. S21 is unusual in being encoded outside the usual long ribosomal protein operons, but rather in contexts that suggest regulation of the initiation of protein translation. [Unknown function, General]


Pssm-ID: 274110  Cd Length: 185  Bit Score: 211.84  E-value: 2.31e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499771407    6 FVKLATKFVEVVHFMGLNYSALLFAAKETQTEDFLYRYN--ENILTFLECFEDYVT---EKALLCSDYTVGGVSQKIESV 80
Cdd:TIGR02396   1 KAKLLDAALEHVPFLGWTDEALLLAARDLGYSDSLPGLLppEGAADLIEFFEDYCDtalLEALKSSDLEGLKVREKIELA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499771407   81 LWNRALVYSEfkhYRQFIKAKFCFVLKPGNSIGSLRCSFSLSDSLWHAIGDIATGFSFYSKRATLMALNSLFMAKFADDY 160
Cdd:TIGR02396  81 VWIRLKMVIP---IIQHLPQALAFLAQPQNLALSLRLLAELSDAIWYLAGDKSTDFNWYTKRAILSGVYSSTELFMIQDK 157

                         170       180
                  ....*....|....*....|....*...
gi 499771407  161 SDGFEKSRDFLRKRIKNIVVLARIKARL 188
Cdd:TIGR02396 158 SEGFEDTWSFLDSRIKNAVKLQKIKARL 185
COQ9 pfam08511
COQ9; COQ9 is an enzyme that is required for the biosynthesis of coenzyme Q. It may either ...
 108-179 3.27e-22

COQ9; COQ9 is an enzyme that is required for the biosynthesis of coenzyme Q. It may either catalyze a reaction in the coenzyme Q biosynthetic pathway or have a regulatory role.


Pssm-ID: 462499  Cd Length: 73  Bit Score: 85.29  E-value: 3.27e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499771407  108 PGNSIGSLRCSFSLSDSLWHAIGDIATGFSFYSKRATLMALNSLFMAKFADDYSDGFEKSRDFLRKRIKNIV 179
Cdd:pfam08511   1 PQNAPTSLKELWRLADDIWYLAGDKSTDFNWYTKRATLSGIYASTELYMLQDKSPDFEDTWEFLDRRIDDVM 72
COG5590 COG5590
Ubiquinone biosynthesis protein COQ9 [Coenzyme transport and metabolism];
108-188 7.56e-17

Ubiquinone biosynthesis protein COQ9 [Coenzyme transport and metabolism];


Pssm-ID: 444329 [Multi-domain]  Cd Length: 214  Bit Score: 74.96  E-value: 7.56e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499771407 108 PGNSIGSLRCSFSLSDSLWHAIGDIATGFSFYSKRATLMALNSLFMAKFADDYSDGFEKSRDFLRKRIKNIVVLARIKAR 187
Cdd:COG5590  112 PQNAALGAKLLWRTADAIWRAAGDTSTDFNWYTKRATLAGVYSSTLLYWLGDDSEDHADTWAFLDRRIDNVMRFEKLKAR 191


                 .
gi 499771407 188 L 188
Cdd:COG5590  192 V 192
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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