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Conserved domains on  [gi|146345462|sp|Q9DCT2|]
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RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial; AltName: Full=Complex I-30kD; Short=CI-30kD; AltName: Full=NADH-ubiquinone oxidoreductase 30 kDa subunit; Flags: Precursor

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06074 PRK06074
NADH dehydrogenase subunit C; Provisional
 57-239 8.02e-81

NADH dehydrogenase subunit C; Provisional


:

Pssm-ID: 235691 [Multi-domain]  Cd Length: 189  Bit Score: 240.97  E-value: 8.02e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462  57 LSAFGEYVAEILPKYVQQVQVScLDELEICIHPDGVIPTLTFLRDHTNAQFKSLADLTAVDVPTRQNRFEIVYNLLSLRF 136
Cdd:PRK06074   4 LEELVAKLLEKLPDAIGKVTVA-FGELTLKVPAEKILEVLTFLRDDPELRFEQLIDLTGVDYPERGKRFEVVYHLLSYKH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462 137 NSRIRVKTYADELTPIDSIVSVHIAANWYEREVWDMFGVFFFNHPDLRRILTDYGFEGHPFRKDFPLTGYVELRYDDEVK 216
Cdd:PRK06074  83 NVRLRVKVRAPEDPVVPSVVDIWPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFPLTGYVEVRYDDEQK 162

                        170       180
                 ....*....|....*....|...
gi 146345462 217 RVVAEPVELaqefrkfdlnSPWE 239
Cdd:PRK06074 163 RVVYEPVTL----------SPWE 175
 
Name Accession Description Interval E-value
PRK06074 PRK06074
NADH dehydrogenase subunit C; Provisional
 57-239 8.02e-81

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 235691 [Multi-domain]  Cd Length: 189  Bit Score: 240.97  E-value: 8.02e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462  57 LSAFGEYVAEILPKYVQQVQVScLDELEICIHPDGVIPTLTFLRDHTNAQFKSLADLTAVDVPTRQNRFEIVYNLLSLRF 136
Cdd:PRK06074   4 LEELVAKLLEKLPDAIGKVTVA-FGELTLKVPAEKILEVLTFLRDDPELRFEQLIDLTGVDYPERGKRFEVVYHLLSYKH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462 137 NSRIRVKTYADELTPIDSIVSVHIAANWYEREVWDMFGVFFFNHPDLRRILTDYGFEGHPFRKDFPLTGYVELRYDDEVK 216
Cdd:PRK06074  83 NVRLRVKVRAPEDPVVPSVVDIWPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFPLTGYVEVRYDDEQK 162

                        170       180
                 ....*....|....*....|...
gi 146345462 217 RVVAEPVELaqefrkfdlnSPWE 239
Cdd:PRK06074 163 RVVYEPVTL----------SPWE 175
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
 62-218 6.94e-66

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 202.37  E-value: 6.94e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462  62 EYVAEILPKYVQQVQVScLDELEICIHPDGVIPTLTFLRDHtnAQFKSLADLTAVDVPTRQNRFEIVYNLLSLRFNSRIR 141
Cdd:COG0852    9 EALEEKFGDAVLEVEEA-RGELTLTVPPEDLVDVARFLRDD--LGFDHLSDLTGVDYPERGDRFEVVYHLLSLTHNRRLR 85

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 146345462 142 VKTYADELTP-IDSIVSVHIAANWYEREVWDMFGVFFFNHPDLRRILTDYGFEGHPFRKDFPLTGYVELRYDDEVKRV 218
Cdd:COG0852   86 LKVFVPRDDPvVPSVTDVWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLEGYVEVRYDEELKRL 163
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
85-207 1.54e-57

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 179.60  E-value: 1.54e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462   85 ICIHPDGVIPTLTFLRDHtNAQFKSLADLTAVDVPtRQNRFEIVYNLLSLRFNSRIRVKTYADELTPIDSIVSVHIAANW 164
Cdd:pfam00329   1 VTVDPEDLLEVARFLRDD-ELGFDHLSDLTGVDYP-EEGRFEVVYHLLSITHNVRVRVKVPLEDDPVVPSVTDIWPGANW 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 146345462  165 YEREVWDMFGVFFFNHPDLRRILTDYGFEGHPFRKDFPLTGYV 207
Cdd:pfam00329  79 YEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLTGYV 121
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
 83-205 2.90e-53

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 168.56  E-value: 2.90e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462   83 LEICIHPDGVIPTLTFLRDHTnAQFKSLADLTAVDVPtRQNRFEIVYNLLSLRFNSRIRVKTYADELTPIDSIVSVHIAA 162
Cdd:TIGR01961   1 LVVWIKKEQLLEVLTFLKDPA-LGFELLTDVSGVDYP-KEKRFEVVYHLLSIKKNRRIRLKVRLSEDDPVPSLTSVFPTA 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 146345462  163 NWYEREVWDMFGVFFFNHPDLRRILTDYGFEGHPFRKDFPLTG 205
Cdd:TIGR01961  79 NWYERETYDMYGIVFDGHPDLRRILMPDDFEGHPLRKDYPLTG 121
 
Name Accession Description Interval E-value
PRK06074 PRK06074
NADH dehydrogenase subunit C; Provisional
 57-239 8.02e-81

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 235691 [Multi-domain]  Cd Length: 189  Bit Score: 240.97  E-value: 8.02e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462  57 LSAFGEYVAEILPKYVQQVQVScLDELEICIHPDGVIPTLTFLRDHTNAQFKSLADLTAVDVPTRQNRFEIVYNLLSLRF 136
Cdd:PRK06074   4 LEELVAKLLEKLPDAIGKVTVA-FGELTLKVPAEKILEVLTFLRDDPELRFEQLIDLTGVDYPERGKRFEVVYHLLSYKH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462 137 NSRIRVKTYADELTPIDSIVSVHIAANWYEREVWDMFGVFFFNHPDLRRILTDYGFEGHPFRKDFPLTGYVELRYDDEVK 216
Cdd:PRK06074  83 NVRLRVKVRAPEDPVVPSVVDIWPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFPLTGYVEVRYDDEQK 162

                        170       180
                 ....*....|....*....|...
gi 146345462 217 RVVAEPVELaqefrkfdlnSPWE 239
Cdd:PRK06074 163 RVVYEPVTL----------SPWE 175
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
 62-218 6.94e-66

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 202.37  E-value: 6.94e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462  62 EYVAEILPKYVQQVQVScLDELEICIHPDGVIPTLTFLRDHtnAQFKSLADLTAVDVPTRQNRFEIVYNLLSLRFNSRIR 141
Cdd:COG0852    9 EALEEKFGDAVLEVEEA-RGELTLTVPPEDLVDVARFLRDD--LGFDHLSDLTGVDYPERGDRFEVVYHLLSLTHNRRLR 85

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 146345462 142 VKTYADELTP-IDSIVSVHIAANWYEREVWDMFGVFFFNHPDLRRILTDYGFEGHPFRKDFPLTGYVELRYDDEVKRV 218
Cdd:COG0852   86 LKVFVPRDDPvVPSVTDVWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLEGYVEVRYDEELKRL 163
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
85-207 1.54e-57

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 179.60  E-value: 1.54e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462   85 ICIHPDGVIPTLTFLRDHtNAQFKSLADLTAVDVPtRQNRFEIVYNLLSLRFNSRIRVKTYADELTPIDSIVSVHIAANW 164
Cdd:pfam00329   1 VTVDPEDLLEVARFLRDD-ELGFDHLSDLTGVDYP-EEGRFEVVYHLLSITHNVRVRVKVPLEDDPVVPSVTDIWPGANW 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 146345462  165 YEREVWDMFGVFFFNHPDLRRILTDYGFEGHPFRKDFPLTGYV 207
Cdd:pfam00329  79 YEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLTGYV 121
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
 83-205 2.90e-53

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 168.56  E-value: 2.90e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462   83 LEICIHPDGVIPTLTFLRDHTnAQFKSLADLTAVDVPtRQNRFEIVYNLLSLRFNSRIRVKTYADELTPIDSIVSVHIAA 162
Cdd:TIGR01961   1 LVVWIKKEQLLEVLTFLKDPA-LGFELLTDVSGVDYP-KEKRFEVVYHLLSIKKNRRIRLKVRLSEDDPVPSLTSVFPTA 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 146345462  163 NWYEREVWDMFGVFFFNHPDLRRILTDYGFEGHPFRKDFPLTG 205
Cdd:TIGR01961  79 NWYERETYDMYGIVFDGHPDLRRILMPDDFEGHPLRKDYPLTG 121
PRK11742 PRK11742
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
 75-202 2.37e-33

bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional


Pssm-ID: 236965 [Multi-domain]  Cd Length: 575  Bit Score: 126.96  E-value: 2.37e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462  75 VQVSCLDELEICIHPDGVIPTLTFLRDHTNAqFKSLADLTAVDVPTRQNR-------FEIVYNLLSLRFNSRIRVKTYAD 147
Cdd:PRK11742  16 VQATRTGIPVVWVKREQLLEVLRFLRKLPKP-YVMLFDLHGIDERLRTHReglpaadFTVFYHLISIERNRDIMLKVALS 94

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 146345462 148 ELTP-IDSIVSVHIAANWYEREVWDMFGVFFFNHPDLRRILTDYGFEGHPFRKDFP 202
Cdd:PRK11742  95 ENDLhVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYP 150
PRK08491 PRK08491
NADH-quinone oxidoreductase subunit C;
44-205 9.45e-33

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 181449  Cd Length: 263  Bit Score: 120.16  E-value: 9.45e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462  44 PTVrPRSDVT----HKQLSAFGEYVaEILPKYVQqvqvscLDELEICIHPDGVIPTLTFLRdhtNAQFKSLADLTAVDVP 119
Cdd:PRK08491  24 PPT-PKSYVEgsvfEKDLNHLSYKV-EILESYIE------LDQAVIWIKKDDNFKVLKILK---HLGYECLSEMSAIDFL 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462 120 TRQNRFEIVYNLLSLRFNSRIRVKTYADELTPIDSIVSVHIAANWYEREVWDMFGVFFFNHPDLRRILTDYGFEGHPFRK 199
Cdd:PRK08491  93 AKKGGFEVFYQLLSMSKRKRVRVKCFLKEKEALQSVSFLFKSANWSEREMYDMFGIVINNHPYLKRILMPDDWVGHPLLK 172


                 ....*.
gi 146345462 200 DFPLTG 205
Cdd:PRK08491 173 SYPLKG 178
PRK07785 PRK07785
NADH dehydrogenase subunit C; Provisional
 65-205 2.62e-27

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 181115 [Multi-domain]  Cd Length: 235  Bit Score: 105.07  E-value: 2.62e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462  65 AEILPKY---VQQVQVScLDELEICIHPDGVIPTLTFLRDHTNAQFKSLADLTAVDVPTRQ-NRFEIVYNLLSLRFNSRI 140
Cdd:PRK07785  71 EEALPEFadaIERVVVD-RGELTLHVRREHLVEVAQTLRDDPALRFELCLGVSGVHYPHDTgRELHAVYHLTSITHNRRI 149

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 146345462 141 RVKTYADELTP-IDSIVSVHIAANWYEREVWDMFGVFFFNHPDLRRILTDYGFEGHPFRKDFPLTG 205
Cdd:PRK07785 150 RLEVAVPDADPhIPSLVSVYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWVGHPQRKDYPLGG 215
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
89-202 3.05e-27

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 110.25  E-value: 3.05e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462  89 PDGVIPTLTFLRDHTNAQFKSLADLTAVDVPTRQNR-----FEIVYNLLSLRFNSRIRVKTYADELTP-IDSIVSVHIAA 162
Cdd:PRK13292 252 PELVPEVLRHLKKRASSPFRRLEDLAAVDESCRRDRekfpdFTVNYHLLSFDTPGHVRIKTELRGRTPeLPSATGVFPAA 331

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 146345462 163 NWYEREVWDMFGVFFFNHPDLRRILTDYGFEGHPFRKDFP 202
Cdd:PRK13292 332 NWYEREAFDMFGIRFAGHPNLRRILMPPDWEGHPLRKEHP 371
HycE1 COG3262
Ni,Fe-hydrogenase III component G [Energy production and conversion];
68-224 5.68e-16

Ni,Fe-hydrogenase III component G [Energy production and conversion];


Pssm-ID: 442493 [Multi-domain]  Cd Length: 523  Bit Score: 76.91  E-value: 5.68e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462  68 LPKYVQQVQVSCLDELEICIHPDGVIPTLTFLRDHTNAqfkSLADLTAVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYAD 147
Cdd:COG3262   11 FGGSILERRWVRPNEVWVEVDREDLPELAEFLAEGGGG---RLAALWGNDERELGGGFAVYYVFALEGEGALVTLKVSVP 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462 148 ELTP-IDSIVSVHIAANWYEREVWDMFGVFFFNHPDLRRILTDYGF-EG-HPFRKDFPLTGYVELRYDDEVKRVVAEPVE 224
Cdd:COG3262   88 KDDPvFPSITDLFPAASWYEREIRDLFGIVPEGHPDPRRLVLHDDWpEGiYPLRKDFKGGPRPAPAPAEEYFRPVEGEGI 167
PRK07735 PRK07735
NADH-quinone oxidoreductase subunit C;
93-215 1.05e-15

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 236081 [Multi-domain]  Cd Length: 430  Bit Score: 76.17  E-value: 1.05e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462  93 IPTLT-----------FLRDHTNAQFKSLADLTAVDVptrQNRFEIVYNLLSLRFNSRIRVKTYADELTP-IDSIVSVHI 160
Cdd:PRK07735 306 VPTLVvepekyyevaeLLRFHEQLAFDYLSELHGTDF---VTHMEVYVHLYSYGKRQSVAVKVKLDREAPqVESVTPLWK 382

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 146345462 161 AANWYEREVWDMFGVFFFNHPDLRRILTDYGFEGHPFRKDFPltgyvelRYDDEV 215
Cdd:PRK07735 383 GANWPEREAYDLLGIVFKGHPNLSRILLPDDWVGHPLRKDYE-------PYDVEV 430
PRK12494 PRK12494
NAD(P)H-quinone oxidoreductase subunit J;
128-201 7.09e-10

NAD(P)H-quinone oxidoreductase subunit J;


Pssm-ID: 183557 [Multi-domain]  Cd Length: 172  Bit Score: 56.50  E-value: 7.09e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 146345462 128 VYNLLSLRFNSR----IRVKTYADELTP-IDSIVSVHIAANWYEREVWDMFGVFFFNHPDLRRILTDYGFEGHPFRKDF 201
Cdd:PRK12494  82 FYHLIKVSDNADkpreVRLKVFLPRDDPrVPSVYWIWKGADWQERETYDMYGINFEGHPNLKRILMPEDWVGWPLRKDY 160
ndhJ CHL00012
NADH dehydrogenase subunit J
 128-210 8.50e-09

NADH dehydrogenase subunit J


Pssm-ID: 176955 [Multi-domain]  Cd Length: 158  Bit Score: 53.16  E-value: 8.50e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146345462 128 VYNLLSLRFNS----RIRVKTYADELTP-IDSIVSVHIAANWYEREVWDMFGVFFFNHPDLRRILTDYGFEGHPFRKDFP 202
Cdd:CHL00012  68 VYHLTRIQYGVdqpeEVCIKVFVPRKNPrIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYI 147


                 ....*...
gi 146345462 203 LTGYVELR 210
Cdd:CHL00012 148 APNFYEIQ 155
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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