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Conserved domains on  [gi|18202739|sp|Q9BXU7|]
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RecName: Full=Ubiquitin carboxyl-terminal hydrolase 26; AltName: Full=Deubiquitinating enzyme 26; AltName: Full=Ubiquitin thioesterase 26; AltName: Full=Ubiquitin-specific-processing protease 26

Protein Classification

PH_USP37_like and Peptidase_C19 domain-containing protein( domain architecture ID 12179965)

PH_USP37_like and Peptidase_C19 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
UCH_N pfam16674
N-terminal of ubiquitin carboxyl-terminal hydrolase 37; UCH_N is a domain found at the ...
3-104 3.19e-51

N-terminal of ubiquitin carboxyl-terminal hydrolase 37; UCH_N is a domain found at the N-terminus of ubiquitin carboxyl-terminal hydrolase 37 or 26. The function is not known.


:

Pssm-ID: 465227  Cd Length: 102  Bit Score: 174.72  E-value: 3.19e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739     3 ALFLRGFVQIGNCKTGISKSKEAFIEAVERKKKDRLVLYFKSGKYSTFRLSDNIQNVVLKSYRGNQNHLHLTLQNNNGLF 82
Cdd:pfam16674   1 PLKVHGFVQIWSKKTGMSKWKEAFIEIVEKKKKVKLVVYFNTGGPKTFQLNNNIKSVVLRSYGEKQNRLHLTLKNNSFLF 80
                          90       100
                  ....*....|....*....|..
gi 18202739    83 IEGLSSTDAEQLKIFLDRVHQN 104
Cdd:pfam16674  81 IDKLSSTDAEELKMFLDRVHQN 102
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
296-564 1.65e-41

Ubiquitin carboxyl-terminal hydrolase;


:

Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 154.52  E-value: 1.65e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739   296 GLPNLGNTCYMNAVLQSLLSIPSFAdDLLNQSFPWGKIPLNALTMCLA---RLLFFKDTYNIEIKEMLLLNLKKAISAAA 372
Cdd:pfam00443   2 GLVNLGNTCYMNSVLQSLFSIPPFR-DYLLRISPLSEDSRYNKDINLLcalRDLFKALQKNSKSSSVSPKMFKKSLGKLN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739   373 EIFHGNAQNDAHEFLAHCLDQLKDNMEKlNTIWKPKSefgednfpkqvfaddpdtsgfscPVITNFELELLHSIACKACG 452
Cdd:pfam00443  81 PDFSGYKQQDAQEFLLFLLDGLHEDLNG-NHSTENES-----------------------LITDLFRGQLKSRLKCLSCG 136
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739   453 QVILKTELNNYLSINLPQRIKAHP------SSIQSTFDLFFGAEELEYKCAKCEHKTSVGVHSFSRLPRILIVHLKRYSL 526
Cdd:pfam00443 137 EVSETFEPFSDLSLPIPGDSAELKtaslqiCFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSY 216
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 18202739   527 NEFCAlKKNDQEVIISKYLKVSSHCNEGTRPPLPLSED 564
Cdd:pfam00443 217 NRSTW-EKLNTEVEFPLELDLSRYLAEELKPKTNNLQD 253
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
802-884 2.25e-13

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 70.98  E-value: 2.25e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 802 ILDKIKSKAKETKRNDDKGDHTYRLISVVSHLGKTLKSGHYICDAYDFEKQIWFTYDDMRV--LGIQEAQMQEDRRCTGY 879
Cdd:cd02257 171 LDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVteVSEEEVLEFGSLSSSAY 250

                ....*
gi 18202739 880 IFFYM 884
Cdd:cd02257 251 ILFYE 255
 
Name Accession Description Interval E-value
UCH_N pfam16674
N-terminal of ubiquitin carboxyl-terminal hydrolase 37; UCH_N is a domain found at the ...
3-104 3.19e-51

N-terminal of ubiquitin carboxyl-terminal hydrolase 37; UCH_N is a domain found at the N-terminus of ubiquitin carboxyl-terminal hydrolase 37 or 26. The function is not known.


Pssm-ID: 465227  Cd Length: 102  Bit Score: 174.72  E-value: 3.19e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739     3 ALFLRGFVQIGNCKTGISKSKEAFIEAVERKKKDRLVLYFKSGKYSTFRLSDNIQNVVLKSYRGNQNHLHLTLQNNNGLF 82
Cdd:pfam16674   1 PLKVHGFVQIWSKKTGMSKWKEAFIEIVEKKKKVKLVVYFNTGGPKTFQLNNNIKSVVLRSYGEKQNRLHLTLKNNSFLF 80
                          90       100
                  ....*....|....*....|..
gi 18202739    83 IEGLSSTDAEQLKIFLDRVHQN 104
Cdd:pfam16674  81 IDKLSSTDAEELKMFLDRVHQN 102
PH_USP37_like cd13312
Pleckstrin homology-like domain of Ubiquitin carboxyl-terminal hydrolase 37; Members here ...
4-105 1.21e-48

Pleckstrin homology-like domain of Ubiquitin carboxyl-terminal hydrolase 37; Members here include USP37, USP29, and USP26. All of these contain a single PH-like domain. USP37 (also called ubiquitin carboxyl-terminal hydrolase 37, ubiquitin thiolesterase 37, deubiquitinating enzyme 37, and tmp_locus_50) is a deubiquitinase that antagonizes the anaphase-promoting complex (APC/C) during G1/S transition by mediating deubiquitination of cyclin-A (CCNA1 and CCNA2), resulting in promoting S phase entry. USP37 mediates deubiquitination of 'Lys-11'-linked polyubiquitin chains, a specific ubiquitin-linkage type mediated by the APC/C complex and 'Lys-48'-linked polyubiquitin chains in vitro. Phosphorylation at Ser-628 during G1/S phase maximizes the deubiquitinase activity, leading to prevent degradation of cyclin-A (CCNA1 and CCNA2). USP29 (also called ubiquitin carboxyl-terminal hydrolase 29, ubiquitin thiolesterase 29, deubiquitinating enzyme 29, and HOM-TES-84/86) plays a role in apoptosis and oxidative stress. In response to oxidative stress, JTV1 dissociates from the ARS complex, translocates to the nucleus, associates with far upstream element binding protein (FBP) and co-activates the transcription of USP29 which binds to, cleaves poly-ubiquitin chains from, and stabilizes p53 leading to apoptosis. The X-linked deubiquitination enzyme USP26 (also called ubiquitin carboxyl-terminal hydrolase 26, ubiquitin thiolesterase 26, and deubiquitinating enzyme 26) is a regulator of androgen receptor (AR) signaling. It binds to AR using three nuclear receptor interaction motifs (LXXLL, FXXLF and FXXFF) and modulates AR ubiquitination. Polymorphism of Usp26 correlates with idiopathic male infertility. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270122  Cd Length: 103  Bit Score: 167.48  E-value: 1.21e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739   4 LFLRGFVQIGNCKTGISKSKEAFIEAVERKKKDRLVLYFKS-GKYSTFRLSDNIQNVVLKSYRGNQNHLHLTLQNNNGLF 82
Cdd:cd13312   1 LKIHGFVQIWSKKTGMTKWKEAFIEIVEGKKKVKLVVYFKTgGKPKTFQLSNNIKSVVLRSYGGNQNHLHLTLKNNSFLF 80
                        90       100
                ....*....|....*....|...
gi 18202739  83 IEGLSSTDAEQLKIFLDRVHQNE 105
Cdd:cd13312  81 IDKLSSTDAEQLKEFLDKVHQKK 103
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
296-564 1.65e-41

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 154.52  E-value: 1.65e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739   296 GLPNLGNTCYMNAVLQSLLSIPSFAdDLLNQSFPWGKIPLNALTMCLA---RLLFFKDTYNIEIKEMLLLNLKKAISAAA 372
Cdd:pfam00443   2 GLVNLGNTCYMNSVLQSLFSIPPFR-DYLLRISPLSEDSRYNKDINLLcalRDLFKALQKNSKSSSVSPKMFKKSLGKLN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739   373 EIFHGNAQNDAHEFLAHCLDQLKDNMEKlNTIWKPKSefgednfpkqvfaddpdtsgfscPVITNFELELLHSIACKACG 452
Cdd:pfam00443  81 PDFSGYKQQDAQEFLLFLLDGLHEDLNG-NHSTENES-----------------------LITDLFRGQLKSRLKCLSCG 136
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739   453 QVILKTELNNYLSINLPQRIKAHP------SSIQSTFDLFFGAEELEYKCAKCEHKTSVGVHSFSRLPRILIVHLKRYSL 526
Cdd:pfam00443 137 EVSETFEPFSDLSLPIPGDSAELKtaslqiCFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSY 216
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 18202739   527 NEFCAlKKNDQEVIISKYLKVSSHCNEGTRPPLPLSED 564
Cdd:pfam00443 217 NRSTW-EKLNTEVEFPLELDLSRYLAEELKPKTNNLQD 253
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
296-558 2.64e-27

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 111.81  E-value: 2.64e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 296 GLPNLGNTCYMNAVLQSLLSipsfaddllnqsfpwgkiplnaltmclarllffkdtynieikemlllnlkkaisaaaeif 375
Cdd:cd02257   1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 376 hgnAQNDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFgednfpkqvfaddpdtsgfSCPVITNFELELLHSIACKACGQVI 455
Cdd:cd02257  21 ---EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSL-------------------KSLIHDLFGGKLESTIVCLECGHES 78
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 456 LKTELNNYLSINLPQRiKAHPSSIQSTFDLFFGAEELE----YKCAKCEHKTSVGVHSFSRLPRILIVHLKRYSLNEFCA 531
Cdd:cd02257  79 VSTEPELFLSLPLPVK-GLPQVSLEDCLEKFFKEEILEgdncYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGT 157
                       250       260
                ....*....|....*....|....*..
gi 18202739 532 LKKNDQEVIISKYLKVSSHCNEGTRPP 558
Cdd:cd02257 158 KEKLNTKVSFPLELDLSPYLSEGEKDS 184
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
802-884 2.25e-13

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 70.98  E-value: 2.25e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 802 ILDKIKSKAKETKRNDDKGDHTYRLISVVSHLGKTLKSGHYICDAYDFEKQIWFTYDDMRV--LGIQEAQMQEDRRCTGY 879
Cdd:cd02257 171 LDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVteVSEEEVLEFGSLSSSAY 250

                ....*
gi 18202739 880 IFFYM 884
Cdd:cd02257 251 ILFYE 255
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
296-469 3.68e-11

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 67.22  E-value: 3.68e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 296 GLPNLGNTCYMNAVLQSLLSIPSFAD--------DLLNQSFPWGKipLNALTMCLARLLffKDTYNIEIKEMLLLNLKKA 367
Cdd:COG5560 267 GLRNLGNTCYMNSALQCLMHTWELRDyflsdeyeESINEENPLGM--HGSVASAYADLI--KQLYDGNLHAFTPSGFKKT 342
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 368 ISAAAEIFHGNAQNDAHEFLAHCLDQLKdnmEKLNTIW-KPKSE----FGEDNFPKQVFADDP--DTSGFSCPVITN-FE 439
Cdd:COG5560 343 IGSFNEEFSGYDQQDSQEFIAFLLDGLH---EDLNRIIkKPYTSkpdlSPGDDVVVKKKAKECwwEHLKRNDSIITDlFQ 419
                       170       180       190
                ....*....|....*....|....*....|
gi 18202739 440 LELLHSIACKACGQVILKTELNNYLSINLP 469
Cdd:COG5560 420 GMYKSTLTCPGCGSVSITFDPFMDLTLPLP 449
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
824-883 4.39e-10

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 62.07  E-value: 4.39e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739   824 YRLISVVSHLGkTLKSGHYICDAYDFEKQIWFTYDDMRVLGIQEAQMQEDRRctGYIFFY 883
Cdd:pfam00443 254 YRLVAVVVHSG-SLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEETAVLSSS--AYILFY 310
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
794-883 5.74e-06

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 49.03  E-value: 5.74e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 794 NKNPRNKdILDKIKSKAKETKRNDDKGD----HTYRLISVVSHLGkTLKSGHYIcdAYDFEKQIWFTYDDMRVLGIQEAQ 869
Cdd:COG5533 192 NLGGNQK-IDTEVDEKFELPVKHDQILNivkeTYYDLVGFVLHQG-SLEGGHYI--AYVKKGGKWEKANDSDVTPVSEEE 267
                        90
                ....*....|....
gi 18202739 870 MQEDRRCTGYIFFY 883
Cdd:COG5533 268 AINEKAKNAYLYFY 281
 
Name Accession Description Interval E-value
UCH_N pfam16674
N-terminal of ubiquitin carboxyl-terminal hydrolase 37; UCH_N is a domain found at the ...
3-104 3.19e-51

N-terminal of ubiquitin carboxyl-terminal hydrolase 37; UCH_N is a domain found at the N-terminus of ubiquitin carboxyl-terminal hydrolase 37 or 26. The function is not known.


Pssm-ID: 465227  Cd Length: 102  Bit Score: 174.72  E-value: 3.19e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739     3 ALFLRGFVQIGNCKTGISKSKEAFIEAVERKKKDRLVLYFKSGKYSTFRLSDNIQNVVLKSYRGNQNHLHLTLQNNNGLF 82
Cdd:pfam16674   1 PLKVHGFVQIWSKKTGMSKWKEAFIEIVEKKKKVKLVVYFNTGGPKTFQLNNNIKSVVLRSYGEKQNRLHLTLKNNSFLF 80
                          90       100
                  ....*....|....*....|..
gi 18202739    83 IEGLSSTDAEQLKIFLDRVHQN 104
Cdd:pfam16674  81 IDKLSSTDAEELKMFLDRVHQN 102
PH_USP37_like cd13312
Pleckstrin homology-like domain of Ubiquitin carboxyl-terminal hydrolase 37; Members here ...
4-105 1.21e-48

Pleckstrin homology-like domain of Ubiquitin carboxyl-terminal hydrolase 37; Members here include USP37, USP29, and USP26. All of these contain a single PH-like domain. USP37 (also called ubiquitin carboxyl-terminal hydrolase 37, ubiquitin thiolesterase 37, deubiquitinating enzyme 37, and tmp_locus_50) is a deubiquitinase that antagonizes the anaphase-promoting complex (APC/C) during G1/S transition by mediating deubiquitination of cyclin-A (CCNA1 and CCNA2), resulting in promoting S phase entry. USP37 mediates deubiquitination of 'Lys-11'-linked polyubiquitin chains, a specific ubiquitin-linkage type mediated by the APC/C complex and 'Lys-48'-linked polyubiquitin chains in vitro. Phosphorylation at Ser-628 during G1/S phase maximizes the deubiquitinase activity, leading to prevent degradation of cyclin-A (CCNA1 and CCNA2). USP29 (also called ubiquitin carboxyl-terminal hydrolase 29, ubiquitin thiolesterase 29, deubiquitinating enzyme 29, and HOM-TES-84/86) plays a role in apoptosis and oxidative stress. In response to oxidative stress, JTV1 dissociates from the ARS complex, translocates to the nucleus, associates with far upstream element binding protein (FBP) and co-activates the transcription of USP29 which binds to, cleaves poly-ubiquitin chains from, and stabilizes p53 leading to apoptosis. The X-linked deubiquitination enzyme USP26 (also called ubiquitin carboxyl-terminal hydrolase 26, ubiquitin thiolesterase 26, and deubiquitinating enzyme 26) is a regulator of androgen receptor (AR) signaling. It binds to AR using three nuclear receptor interaction motifs (LXXLL, FXXLF and FXXFF) and modulates AR ubiquitination. Polymorphism of Usp26 correlates with idiopathic male infertility. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270122  Cd Length: 103  Bit Score: 167.48  E-value: 1.21e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739   4 LFLRGFVQIGNCKTGISKSKEAFIEAVERKKKDRLVLYFKS-GKYSTFRLSDNIQNVVLKSYRGNQNHLHLTLQNNNGLF 82
Cdd:cd13312   1 LKIHGFVQIWSKKTGMTKWKEAFIEIVEGKKKVKLVVYFKTgGKPKTFQLSNNIKSVVLRSYGGNQNHLHLTLKNNSFLF 80
                        90       100
                ....*....|....*....|...
gi 18202739  83 IEGLSSTDAEQLKIFLDRVHQNE 105
Cdd:cd13312  81 IDKLSSTDAEQLKEFLDKVHQKK 103
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
296-564 1.65e-41

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 154.52  E-value: 1.65e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739   296 GLPNLGNTCYMNAVLQSLLSIPSFAdDLLNQSFPWGKIPLNALTMCLA---RLLFFKDTYNIEIKEMLLLNLKKAISAAA 372
Cdd:pfam00443   2 GLVNLGNTCYMNSVLQSLFSIPPFR-DYLLRISPLSEDSRYNKDINLLcalRDLFKALQKNSKSSSVSPKMFKKSLGKLN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739   373 EIFHGNAQNDAHEFLAHCLDQLKDNMEKlNTIWKPKSefgednfpkqvfaddpdtsgfscPVITNFELELLHSIACKACG 452
Cdd:pfam00443  81 PDFSGYKQQDAQEFLLFLLDGLHEDLNG-NHSTENES-----------------------LITDLFRGQLKSRLKCLSCG 136
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739   453 QVILKTELNNYLSINLPQRIKAHP------SSIQSTFDLFFGAEELEYKCAKCEHKTSVGVHSFSRLPRILIVHLKRYSL 526
Cdd:pfam00443 137 EVSETFEPFSDLSLPIPGDSAELKtaslqiCFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSY 216
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 18202739   527 NEFCAlKKNDQEVIISKYLKVSSHCNEGTRPPLPLSED 564
Cdd:pfam00443 217 NRSTW-EKLNTEVEFPLELDLSRYLAEELKPKTNNLQD 253
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
296-558 2.64e-27

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 111.81  E-value: 2.64e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 296 GLPNLGNTCYMNAVLQSLLSipsfaddllnqsfpwgkiplnaltmclarllffkdtynieikemlllnlkkaisaaaeif 375
Cdd:cd02257   1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 376 hgnAQNDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFgednfpkqvfaddpdtsgfSCPVITNFELELLHSIACKACGQVI 455
Cdd:cd02257  21 ---EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSL-------------------KSLIHDLFGGKLESTIVCLECGHES 78
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 456 LKTELNNYLSINLPQRiKAHPSSIQSTFDLFFGAEELE----YKCAKCEHKTSVGVHSFSRLPRILIVHLKRYSLNEFCA 531
Cdd:cd02257  79 VSTEPELFLSLPLPVK-GLPQVSLEDCLEKFFKEEILEgdncYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGT 157
                       250       260
                ....*....|....*....|....*..
gi 18202739 532 LKKNDQEVIISKYLKVSSHCNEGTRPP 558
Cdd:cd02257 158 KEKLNTKVSFPLELDLSPYLSEGEKDS 184
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
296-541 1.32e-22

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 99.70  E-value: 1.32e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 296 GLPNLGNTCYMNAVLQSLLSIPSFA---DDLLNQSFPWGKIPLNALTMCLARLL---------------FFKDTYNIEIK 357
Cdd:cd02658   1 GLRNLGNSCYLNSVLQVLFSIPSFQwryDDLENKFPSDVVDPANDLNCQLIKLAdgllsgryskpaslkSENDPYQVGIK 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 358 EmllLNLKKAISAAAEIFHGNAQNDAHEFLAHCLDQLKDNMEKLNTiwkpksefgednfpkqvfaDDPdtsgfscpvITN 437
Cdd:cd02658  81 P---SMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKNLG-------------------LNP---------NDL 129
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 438 FELELLHSIACKACGQVILKTELNNYLSINLPQRIKAH---------PSSIQSTFDLFFGAEELEYKCAKC-EHKTSVGV 507
Cdd:cd02658 130 FKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATEkeegelvyePVPLEDCLKAYFAPETIEDFCSTCkEKTTATKT 209
                       250       260       270
                ....*....|....*....|....*....|....
gi 18202739 508 HSFSRLPRILIVHLKRYSLNEFCALKKNDQEVII 541
Cdd:cd02658 210 TGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDV 243
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
296-552 3.84e-17

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 83.09  E-value: 3.84e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 296 GLPNLGNTCYMNAVLQSLLSIPSFADDLLNQSFPWGKIPLNALTMC-----LARLLFfkDTYNIEIKEMLLLNLKKaisa 370
Cdd:cd02661   3 GLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCaleahVERALA--SSGPGSAPRIFSSNLKQ---- 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 371 AAEIFHGNAQNDAHEFLAHCLDQL-KDNMEKLNTIWKPKSEFGEDNFPKQVFaddpdtSGFscpvitnfeleLLHSIACK 449
Cdd:cd02661  77 ISKHFRIGRQEDAHEFLRYLLDAMqKACLDRFKKLKAVDPSSQETTLVQQIF------GGY-----------LRSQVKCL 139
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 450 ACGQVILKTElnNYLSINLpqRIKAhPSSIQSTFDLFFGAEELE----YKCAKCEHKTSVGVH-SFSRLPRILIVHLKRY 524
Cdd:cd02661 140 NCKHVSNTYD--PFLDLSL--DIKG-ADSLEDALEQFTKPEQLDgenkYKCERCKKKVKASKQlTIHRAPNVLTIHLKRF 214
                       250       260       270
                ....*....|....*....|....*....|.
gi 18202739 525 SLNEFCALKKN---DQEVIISKYLKVSSHCN 552
Cdd:cd02661 215 SNFRGGKINKQisfPETLDLSPYMSQPNDGP 245
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
296-545 8.38e-17

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 80.87  E-value: 8.38e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 296 GLPNLGNTCYMNAVLQSLLSIPSFADdllnqsfpwgkiplnaltmclarllffkdtYNIEIKEmlllnlkkaisaaaeif 375
Cdd:cd02662   1 GLVNLGNTCFMNSVLQALASLPSLIE------------------------------YLEEFLE----------------- 33
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 376 hgnaQNDAHEFLAHCLDQLKDNMEklntiwkpksefgednFPkqvfaddpdtsgfscpvitnFELELLHSIACKACGQVI 455
Cdd:cd02662  34 ----QQDAHELFQVLLETLEQLLK----------------FP--------------------FDGLLASRIVCLQCGESS 73
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 456 LKTELNNY-LSINLPQRIKAHPSSIQSTFDLFFGAEELE-YKCAKCEHKtsvgvhsFSRLPRILIVHLKRYSLNEFCALK 533
Cdd:cd02662  74 KVRYESFTmLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDdYKCDRCQTV-------IVRLPQILCIHLSRSVFDGRGTST 146
                       250
                ....*....|....*.
gi 18202739 534 KNDQEV----IISKYL 545
Cdd:cd02662 147 KNSCKVsfpeRLPKVL 162
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
296-582 2.19e-16

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 80.51  E-value: 2.19e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 296 GLPNLGNTCYMNAVLQSLLSIPSFADdLLNQSfpwgkiplnaltmclARLLFFKdtynieikemlllnlkkaISAAAEIF 375
Cdd:cd02667   1 GLSNLGNTCFFNAVMQNLSQTPALRE-LLSET---------------PKELFSQ------------------VCRKAPQF 46
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 376 HGNAQNDAHEFLAHCLDQLKdnmeklntiwkpksefgedNFPKQVFADdpdtsgfscpvitnfelELLHSIACKACGQVI 455
Cdd:cd02667  47 KGYQQQDSHELLRYLLDGLR-------------------TFIDSIFGG-----------------ELTSTIMCESCGTVS 90
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 456 LKTElnNYLSINLPQRIKAH-PSSIQSTFDLFFGAEELEYKCAKCEHKTSVGVHSF--SRLPRILIVHLKRYSLNEFCAL 532
Cdd:cd02667  91 LVYE--PFLDLSLPRSDEIKsECSIESCLKQFTEVEILEGNNKFACENCTKAKKQYliSKLPPVLVIHLKRFQQPRSANL 168
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|...
gi 18202739 533 KKNDQEVIISKYLKVSSHCNegtrPPLPLSEDGEITDFQLLKVIRK---MTSG 582
Cdd:cd02667 169 RKVSRHVSFPEILDLAPFCD----PKCNSSEDKSSVLYRLYGVVEHsgtMRSG 217
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
296-537 6.10e-16

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 79.99  E-value: 6.10e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 296 GLPNLGNTCYMNAVLQSLLSIPSFADDLLNQSFPWGKIPLNALTMCLARLLFFKDTYNIEIKEMLLLNLKKaiSAAAEIF 375
Cdd:cd02659   4 GLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTR--SFGWDSL 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 376 HGNAQNDAHEFLAHCLDQLKDNMEKLntiwkpksefGEDNFPKQVFaddpdtSGfscpVITNFelellhsIACKACGQVi 455
Cdd:cd02659  82 NTFEQHDVQEFFRVLFDKLEEKLKGT----------GQEGLIKNLF------GG----KLVNY-------IICKECPHE- 133
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 456 lKTELNNYLSINLPqrIKAHpSSIQSTFDLFFGAEELE----YKCAKCEHK--TSVGVHsFSRLPRILIVHLKR--YSLN 527
Cdd:cd02659 134 -SEREEYFLDLQVA--VKGK-KNLEESLDAYVQGETLEgdnkYFCEKCGKKvdAEKGVC-FKKLPPVLTLQLKRfeFDFE 208
                       250
                ....*....|
gi 18202739 528 EFCALKKNDQ 537
Cdd:cd02659 209 TMMRIKINDR 218
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
296-576 3.24e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 77.80  E-value: 3.24e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 296 GLPNLGNTCYMNAVLQSLLSIPSFADDLLNQ---SFPWGKIPLNALTMCLARLlfFKDTYNIEIKE------MLLLNLKK 366
Cdd:cd02660   2 GLINLGATCFMNVILQALLHNPLLRNYFLSDrhsCTCLSCSPNSCLSCAMDEI--FQEFYYSGDRSpygpinLLYLSWKH 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 367 AISAAaeifhGNAQNDAHEFLAHCLDQLKDNMEKlntiwkpksefgednfpkqVFADDPDTSGFSCPVITNFELELLHSI 446
Cdd:cd02660  80 SRNLA-----GYSQQDAHEFFQFLLDQLHTHYGG-------------------DKNEANDESHCNCIIHQTFSGSLQSSV 135
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 447 ACKACGQVI----------LKTELNNYLSINLPQRIKAHPSSIQSTFDLFFGAEELE---YKCAKC-EHKTSVGVHSFSR 512
Cdd:cd02660 136 TCQRCGGVSttvdpfldlsLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGdfaYKCSGCgSTQEATKQLSIKK 215
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 18202739 513 LPRILIVHLKRYSLNEFCALKKNDQEVIISKYLKVSSHCNEGTRPPLPLSEDGEITDFQLLKVI 576
Cdd:cd02660 216 LPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVV 279
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
296-539 6.44e-15

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 75.02  E-value: 6.44e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 296 GLPNLGNTCYMNAVLQsllsipsfaddllnqsfpwgkiplnaltmCLArllffkdtynieikemlllnlkkaisaaaeif 375
Cdd:cd02674   1 GLRNLGNTCYMNSILQ-----------------------------CLS-------------------------------- 19
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 376 hgNAQNDAHEFLAHCLDqlkdnmeKLNTIwkpksefgednfpkqvfaddpdtsgfscpvITN-FELELLHSIACKACGQV 454
Cdd:cd02674  20 --ADQQDAQEFLLFLLD-------GLHSI------------------------------IVDlFQGQLKSRLTCLTCGKT 60
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 455 ILKTELNNYLSINLPQ-RIKAHPSSIQSTFDLFFGAEELE----YKCAKCEHKTSVGVH-SFSRLPRILIVHLKRYSlNE 528
Cdd:cd02674  61 STTFEPFTYLSLPIPSgSGDAPKVTLEDCLRLFTKEETLDgdnaWKCPKCKKKRKATKKlTISRLPKVLIIHLKRFS-FS 139
                       250
                ....*....|.
gi 18202739 529 FCALKKNDQEV 539
Cdd:cd02674 140 RGSTRKLTTPV 150
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
802-884 2.25e-13

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 70.98  E-value: 2.25e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 802 ILDKIKSKAKETKRNDDKGDHTYRLISVVSHLGKTLKSGHYICDAYDFEKQIWFTYDDMRV--LGIQEAQMQEDRRCTGY 879
Cdd:cd02257 171 LDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVteVSEEEVLEFGSLSSSAY 250

                ....*
gi 18202739 880 IFFYM 884
Cdd:cd02257 251 ILFYE 255
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
296-527 1.98e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 69.54  E-value: 1.98e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 296 GLPNLGNTCYMNAVLQSLLSIPSFADDL-----LNQSfpwgKIPLNALTMCLARLlffkdtYNIEIKEMLLLNLKKAISA 370
Cdd:cd02671  26 GLNNLGNTCYLNSVLQVLYFCPGFKHGLkhlvsLISS----VEQLQSSFLLNPEK------YNDELANQAPRRLLNALRE 95
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 371 AAEIFHGNAQNDAHEFLAHCLDQLKDNMEKLntiwkpksefgednFPKQVFADdpdTSGFSCPVITNfELELLHSIACKA 450
Cdd:cd02671  96 VNPMYEGYLQHDAQEVLQCILGNIQELVEKD--------------FQGQLVLR---TRCLECETFTE-RREDFQDISVPV 157
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18202739 451 CGQVILKTELNNYLSINLPQRIKAHPSSIQSTFDLFFGAEELEYKCAKCEHKT-SVGVHSFSRLPRILIVHLKRYSLN 527
Cdd:cd02671 158 QESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTeAERSLLFDKLPEVITIHLKCFAAN 235
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
296-528 4.15e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 68.11  E-value: 4.15e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 296 GLPNLGNTCYMNAVLQSLlsipsFADDLLNqsfpwgkiplnaltmCLArLLF------FKDTYNIEIKEMLLLnLKKAis 369
Cdd:cd02663   1 GLENFGNTCYCNSVLQAL-----YFENLLT---------------CLK-DLFesiseqKKRTGVISPKKFITR-LKRE-- 56
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 370 aaAEIFHGNAQNDAHEFLAHCLDQLKDNMEKLNtiwkpksefgednfpKQVFADDPDTSGFSCPVITN-----FELELLH 444
Cdd:cd02663  57 --NELFDNYMHQDAHEFLNFLLNEIAEILDAER---------------KAEKANRKLNNNNNAEPQPTwvheiFQGILTN 119
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 445 SIACKACGQVILKTELNNYLSINLPQRikahpSSIQSTFDLFFGAEEL----EYKCAKC----EHKTSVGVhsfSRLPRI 516
Cdd:cd02663 120 ETRCLTCETVSSRDETFLDLSIDVEQN-----TSITSCLRQFSATETLcgrnKFYCDECcslqEAEKRMKI---KKLPKI 191
                       250
                ....*....|..
gi 18202739 517 LIVHLKRYSLNE 528
Cdd:cd02663 192 LALHLKRFKYDE 203
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
297-544 2.86e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 64.47  E-value: 2.86e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 297 LPNLGNTCYMNAVLQSLLSIpsfaddllnqsfpwGKIplnaltmclarllffkdtynieikemlllnlkkaisaaAEIFH 376
Cdd:cd02673   2 LVNTGNSCYFNSTMQALSSI--------------GKI--------------------------------------NTEFD 29
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 377 GNAQNDAHEFLAHCLDQLKDNMEKLNTIWKPksefgednFPKQVFADDPdtsgfscpvITNFELELLHSIACKACGQVIL 456
Cdd:cd02673  30 NDDQQDAHEFLLTLLEAIDDIMQVNRTNVPP--------SNIEIKRLNP---------LEAFKYTIESSYVCIGCSFEEN 92
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 457 KTELNNYLSINLpqrIKAHPSSIQSTFDLFFGAEELEYKCAKCEHKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKND 536
Cdd:cd02673  93 VSDVGNFLDVSM---IDNKLDIDELLISNFKTWSPIEKDCSSCKCESAISSERIMTFPECLSINLKRYKLRIATSDYLKK 169

                ....*...
gi 18202739 537 QEVIISKY 544
Cdd:cd02673 170 NEEIMKKY 177
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
296-469 3.68e-11

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 67.22  E-value: 3.68e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 296 GLPNLGNTCYMNAVLQSLLSIPSFAD--------DLLNQSFPWGKipLNALTMCLARLLffKDTYNIEIKEMLLLNLKKA 367
Cdd:COG5560 267 GLRNLGNTCYMNSALQCLMHTWELRDyflsdeyeESINEENPLGM--HGSVASAYADLI--KQLYDGNLHAFTPSGFKKT 342
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 368 ISAAAEIFHGNAQNDAHEFLAHCLDQLKdnmEKLNTIW-KPKSE----FGEDNFPKQVFADDP--DTSGFSCPVITN-FE 439
Cdd:COG5560 343 IGSFNEEFSGYDQQDSQEFIAFLLDGLH---EDLNRIIkKPYTSkpdlSPGDDVVVKKKAKECwwEHLKRNDSIITDlFQ 419
                       170       180       190
                ....*....|....*....|....*....|
gi 18202739 440 LELLHSIACKACGQVILKTELNNYLSINLP 469
Cdd:COG5560 420 GMYKSTLTCPGCGSVSITFDPFMDLTLPLP 449
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
824-883 4.39e-10

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 62.07  E-value: 4.39e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739   824 YRLISVVSHLGkTLKSGHYICDAYDFEKQIWFTYDDMRVLGIQEAQMQEDRRctGYIFFY 883
Cdd:pfam00443 254 YRLVAVVVHSG-SLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEETAVLSSS--AYILFY 310
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
296-404 1.82e-09

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 59.82  E-value: 1.82e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 296 GLPNLGNTCYMNAVLQSL-LSIPSFADDLLNQSFpwgkiPLNALtmclarllffKDTYNIE-----IKEMLLLNLKKAIS 369
Cdd:COG5533   1 GLPNLGNTCFMNSVLQILaLYLPKLDELLDDLSK-----ELKVL----------KNVIRKPepdlnQEEALKLFTALWSS 65
                        90       100       110
                ....*....|....*....|....*....|....*...
gi 18202739 370 AA---AEIFHGNAQNDAHEFLAHCLDQLKDNMEKLNTI 404
Cdd:COG5533  66 KEhkvGWIPPMGSQEDAHELLGKLLDELKLDLVNSFTI 103
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
296-547 2.74e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 59.81  E-value: 2.74e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 296 GLPNLGNTCYMNAVLQSLLSIPSFADDLLNQSFPWGKiplNALTMCLARLLFFkdtynieikemLLLNLKKAISAAAEI- 374
Cdd:cd02664   1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLG---DSQSVMKKLQLLQ-----------AHLMHTQRRAEAPPDy 66
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 375 ---------FHGNAQNDAHEFLAHCLDQLKDNMEKLntiwkpksefgednfpkqvfaddpdtsgfscpvitnFELELLHS 445
Cdd:cd02664  67 fleasrppwFTPGSQQDCSEYLRYLLDRLHTLIEKM------------------------------------FGGKLSTT 110
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 446 IACKACGQVILKTELNNYLSINLPqrikahpsSIQSTFDLFFGAEEL----EYKCAKC-------EHKTSVGVhsfsrlP 514
Cdd:cd02664 111 IRCLNCNSTSARTERFRDLDLSFP--------SVQDLLNYFLSPEKLtgdnQYYCEKCaslqdaeKEMKVTGA------P 176
                       250       260       270
                ....*....|....*....|....*....|....
gi 18202739 515 RILIVHLKRYSLNEFCALK-KNDQEVIISKYLKV 547
Cdd:cd02664 177 EYLILTLLRFSYDQKTHVReKIMDNVSINEVLSL 210
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
296-524 7.06e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 55.03  E-value: 7.06e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 296 GLPNLGNTCYMNAVLQSLLSIPSFADDLLNQSFPWGKIPLNALTMCLArllfFKDTYNieikEM-----------LLLNL 364
Cdd:cd02657   1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNA----LRDLFD----TMdkkqepvppieFLQLL 72
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 365 KKAISAAAEI--FHGNAQNDAHEflahCLDQLkdnMEKLNTIWKPKSEFGEdnfpkqvFADDpdtsgfscpvitNFELEL 442
Cdd:cd02657  73 RMAFPQFAEKqnQGGYAQQDAEE----CWSQL---LSVLSQKLPGAGSKGS-------FIDQ------------LFGIEL 126
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 443 LHSIACKACG-QVILKTELNNYLSINLpqRIKAHPSSIQSTFDLffGAEELEYKCAKCEHKTSvgVHS----FSRLPRIL 517
Cdd:cd02657 127 ETKMKCTESPdEEEVSTESEYKLQCHI--SITTEVNYLQDGLKK--GLEEEIEKHSPTLGRDA--IYTktsrISRLPKYL 200

                ....*..
gi 18202739 518 IVHLKRY 524
Cdd:cd02657 201 TVQFVRF 207
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
801-883 6.72e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 52.37  E-value: 6.72e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 801 DILDKIKSKAKETK-RNDDKGDHTYRLISVVSHLGkTLKSGHYICDAYDfEKQIWFTYDDMRVLGIQEAQMQedrRCTGY 879
Cdd:cd02660 249 NMTPYTSSSIGDTQdSNSLDPDYTYDLFAVVVHKG-TLDTGHYTAYCRQ-GDGQWFKFDDAMITRVSEEEVL---KSQAY 323

                ....
gi 18202739 880 IFFY 883
Cdd:cd02660 324 LLFY 327
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
817-883 1.66e-06

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 49.98  E-value: 1.66e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 18202739 817 DDKGDHTYRLISVVSHLGkTLKSGHYICDAYDFEKQIWFTYDDMRVLGIQEAQMQEDrrcTGYIFFY 883
Cdd:cd02674 167 SFTGPFKYDLYAVVNHYG-SLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSS---SAYILFY 229
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
818-872 2.86e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 50.50  E-value: 2.86e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 18202739 818 DKGDHTYRLISVVSHLGKTLKSGHYICDAYDFEKQIWFTYDDMRVLGIQEAQMQE 872
Cdd:cd02668 240 DEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKL 294
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
778-883 5.54e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 49.24  E-value: 5.54e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 778 LNLQKsnrnslLALGSNKNPRNKDILDKIkskaketkrNDDKGDHTYRLISVVSHLGKTLKSGHYIC----DAYDFEKqi 853
Cdd:cd02658 221 INMKR------FQLLENWVPKKLDVPIDV---------PEELGPGKYELIAFISHKGTSVHSGHYVAhikkEIDGEGK-- 283
                        90       100       110
                ....*....|....*....|....*....|
gi 18202739 854 WFTYDDMRVLGIQEAQMQEDrrcTGYIFFY 883
Cdd:cd02658 284 WVLFNDEKVVASQDPPEMKK---LGYIYFY 310
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
794-883 5.74e-06

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 49.03  E-value: 5.74e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 794 NKNPRNKdILDKIKSKAKETKRNDDKGD----HTYRLISVVSHLGkTLKSGHYIcdAYDFEKQIWFTYDDMRVLGIQEAQ 869
Cdd:COG5533 192 NLGGNQK-IDTEVDEKFELPVKHDQILNivkeTYYDLVGFVLHQG-SLEGGHYI--AYVKKGGKWEKANDSDVTPVSEEE 267
                        90
                ....*....|....
gi 18202739 870 MQEDRRCTGYIFFY 883
Cdd:COG5533 268 AINEKAKNAYLYFY 281
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
749-862 1.12e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 48.64  E-value: 1.12e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 749 EQAPQQALPQSFPKPGTQghtKNLLRPTKLNLQKSNRNSLLALGSNKNPRNKDILDKIKS----KAKETKRNDDKGDHTY 824
Cdd:cd02666 205 TKLPQRSQVQAQLAQPLQ---RELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNElaelKHEIEKQFDDLKSYGY 281
                        90       100       110
                ....*....|....*....|....*....|....*...
gi 18202739 825 RLISVVSHLGKTlKSGHYICDAYDFEKQIWFTYDDMRV 862
Cdd:cd02666 282 RLHAVFIHRGEA-SSGHYWVYIKDFEENVWRKYNDETV 318
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
296-525 4.01e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 46.64  E-value: 4.01e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 296 GLPNLGNTCYMNAVLQ----------SLLSIPSFADDLLNQSFPwgKIPLNALTMCLARLLFFKDTYNIEIKEMLLLNLK 365
Cdd:cd02668   1 GLKNLGATCYVNSFLQlwfmnlefrkAVYECNSTEDAELKNMPP--DKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFV 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 366 KAIsaaaEIFHGNaQNDAHEFLAHCLDQLKDNMEKLNtiwkpksefgednfpkqvfadDPDTSGFscpVITNFELELLHS 445
Cdd:cd02668  79 KAL----GLDTGQ-QQDAQEFSKLFLSLLEAKLSKSK---------------------NPDLKNI---VQDLFRGEYSYV 129
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 446 IACKACGQvILKTELNNYlsiNLPQRIKAHpSSIQSTFDLFFGAEELE----YKCAKCEHKTSvGVHS--FSRLPRILIV 519
Cdd:cd02668 130 TQCSKCGR-ESSLPSKFY---ELELQLKGH-KTLEECIDEFLKEEQLTgdnqYFCESCNSKTD-ATRRirLTTLPPTLNF 203

                ....*.
gi 18202739 520 HLKRYS 525
Cdd:cd02668 204 QLLRFV 209
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
296-400 2.06e-04

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 45.25  E-value: 2.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739  296 GLPNLGNTCYMNAVLQSLLSIPSFADDL--LNQSFPWGKiplNALTMCLARLLffkdtYNIEIKEMLLLNLKKAISAAAE 373
Cdd:COG5077  195 GLRNQGATCYMNSLLQSLFFIAKFRKDVygIPTDHPRGR---DSVALALQRLF-----YNLQTGEEPVDTTELTRSFGWD 266
                         90       100
                 ....*....|....*....|....*..
gi 18202739  374 IFHGNAQNDAHEFLAHCLDQLKDNMEK 400
Cdd:COG5077  267 SDDSFMQHDIQEFNRVLQDNLEKSMRG 293
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
803-862 2.55e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 44.17  E-value: 2.55e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18202739 803 LDKIKSKAKETKRNDDKGDHTYRLISVVSHLGkTLKSGHYIcdAY--DFEKQIWFTYDDMRV 862
Cdd:cd02659 231 TEKGLAKKEGDSEKKDSESYIYELHGVLVHSG-DAHGGHYY--SYikDRDDGKWYKFNDDVV 289
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
822-883 3.77e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 43.73  E-value: 3.77e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18202739 822 HTYRLISVVSHLGKTLKSGHYIcdAYdfekQIWFTYDDMRVLGIQEAQMQE----DRR--CTGYIFFY 883
Cdd:cd02671 270 DVYRLFAVVMHSGATISSGHYT--AY----VRWLLFDDSEVKVTEEKDFLEalspNTSstSTPYLLFY 331
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
811-883 4.75e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 43.07  E-value: 4.75e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18202739 811 KETKRNDDKGDHTYRLISVVSHLGKTLKSGHYI--CDAYDFekqiWFTYDDMRVLGIQEAQMQE---DRR--CTGYIFFY 883
Cdd:cd02663 224 FNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVsiVKSHGG----WLLFDDETVEKIDENAVEEffgDSPnqATAYVLFY 299
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
823-884 7.55e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 42.65  E-value: 7.55e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18202739 823 TYRLISVVSHLGKTLKSGHYICDAYDFEKQiWFTYDDMRVLGIQEAQMQEDRrctGYIFFYM 884
Cdd:cd02661 247 KYKLYAVLVHSGFSPHSGHYYCYVKSSNGK-WYNMDDSKVSPVSIETVLSQK---AYILFYI 304
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
296-325 4.61e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 40.17  E-value: 4.61e-03
                        10        20        30
                ....*....|....*....|....*....|
gi 18202739 296 GLPNLGNTCYMNAVLQSLLSIPSFADDLLN 325
Cdd:cd02666   3 GLDNIGNTCYLNSLLQYFFTIKPLRDLVLN 32
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
821-883 4.77e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 39.82  E-value: 4.77e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18202739 821 DHTYRLISVVSHLGKTLKSGHYIcdAY---DFEKQIWFTYDDMRVLGIQEAQMQEDRRCTGYIFFY 883
Cdd:cd02673 181 DAKYSLVAVICHLGESPYDGHYI--AYtkeLYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFY 244
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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