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Conserved domains on  [gi|1723730|sp|P53297|]
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RecName: Full=PAB1-binding protein 1; AltName: Full=Poly(A)-binding protein-binding protein

Protein Classification

IF2_N and PHA03247 domain-containing protein( domain architecture ID 11474098)

IF2_N and PHA03247 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
 226-291 5.47e-32

LsmAD domain; This domain is found associated with Lsm domain.


:

Pssm-ID: 461998 [Multi-domain]  Cd Length: 65  Bit Score: 118.44  E-value: 5.47e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1723730    226 FGVKSTFDEHLYTTKINKDDPNYSKRLQEAERIAKEIESQgTSGNIHIAEDRGIIIDDSGLDEEDL 291
Cdd:pfam06741   1 FGVKSTYDENLYTTKLDRSSPDYKEREAEAERIAREIEGS-ASTNAHVAEERGLDVDDSGLDEEDK 65
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
 54-131 8.40e-15

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


:

Pssm-ID: 464173  Cd Length: 78  Bit Score: 69.89  E-value: 8.40e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1723730     54 YLLANSIGSDVTVTVTSGVKYTGLLVSCNLEstNGIDVVLRFPRVADSGVSDSVDDLAKTLGETLLIHGEDVAELELK 131
Cdd:pfam14438   3 FLLTSLVGLVVEVTTKNGEVYEGIFSTASLE--KDFGVVLKMARRIKKSNGSGLNPVRGEIVDTMIFPAKDIVDIEAK 78
 
Name Accession Description Interval E-value
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
 226-291 5.47e-32

LsmAD domain; This domain is found associated with Lsm domain.


Pssm-ID: 461998 [Multi-domain]  Cd Length: 65  Bit Score: 118.44  E-value: 5.47e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1723730    226 FGVKSTFDEHLYTTKINKDDPNYSKRLQEAERIAKEIESQgTSGNIHIAEDRGIIIDDSGLDEEDL 291
Cdd:pfam06741   1 FGVKSTYDENLYTTKLDRSSPDYKEREAEAERIAREIEGS-ASTNAHVAEERGLDVDDSGLDEEDK 65
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
 54-131 8.40e-15

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


Pssm-ID: 464173  Cd Length: 78  Bit Score: 69.89  E-value: 8.40e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1723730     54 YLLANSIGSDVTVTVTSGVKYTGLLVSCNLEstNGIDVVLRFPRVADSGVSDSVDDLAKTLGETLLIHGEDVAELELK 131
Cdd:pfam14438   3 FLLTSLVGLVVEVTTKNGEVYEGIFSTASLE--KDFGVVLKMARRIKKSNGSGLNPVRGEIVDTMIFPAKDIVDIEAK 78
 
Name Accession Description Interval E-value
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
 226-291 5.47e-32

LsmAD domain; This domain is found associated with Lsm domain.


Pssm-ID: 461998 [Multi-domain]  Cd Length: 65  Bit Score: 118.44  E-value: 5.47e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1723730    226 FGVKSTFDEHLYTTKINKDDPNYSKRLQEAERIAKEIESQgTSGNIHIAEDRGIIIDDSGLDEEDL 291
Cdd:pfam06741   1 FGVKSTYDENLYTTKLDRSSPDYKEREAEAERIAREIEGS-ASTNAHVAEERGLDVDDSGLDEEDK 65
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
 54-131 8.40e-15

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


Pssm-ID: 464173  Cd Length: 78  Bit Score: 69.89  E-value: 8.40e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1723730     54 YLLANSIGSDVTVTVTSGVKYTGLLVSCNLEstNGIDVVLRFPRVADSGVSDSVDDLAKTLGETLLIHGEDVAELELK 131
Cdd:pfam14438   3 FLLTSLVGLVVEVTTKNGEVYEGIFSTASLE--KDFGVVLKMARRIKKSNGSGLNPVRGEIVDTMIFPAKDIVDIEAK 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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