|
Name |
Accession |
Description |
Interval |
E-value |
| TMTC_DUF1736 |
pfam08409 |
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ... |
258-331 |
1.60e-38 |
|
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.
Pssm-ID: 462468 Cd Length: 75 Bit Score: 137.66 E-value: 1.60e-38
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 224809432 258 QSQLPVFTRFDNPAAVSPTP-TRQLTFNYLLPVNAWLLLNPSELCCDWTMGTIPLIESLLDIRNLATFTFFCFLG 331
Cdd:pfam08409 1 GGQLPVFSASDNPAAFSPSLlTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
439-668 |
8.67e-37 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 138.99 E-value: 8.67e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 439 LKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkK 518
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADY--------------E 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 519 YAARIAPNHLNVYINLANlIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNAD 598
Cdd:COG0457 67 QALELDPDDAEALNNLGL-ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 599 LWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKLRPEARKRLLSYINEEPLDA 668
Cdd:COG0457 146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
476-732 |
1.73e-36 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 138.22 E-value: 1.73e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 476 QPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAARIAPNHLNVYINLANlIRANESRLEEADQLYRQA 555
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDY--------------EKALELDPDDAEALYNLGL-AYLRLGRYEEALADYEQA 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 556 ISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALF 635
Cdd:COG0457 69 LELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 636 NSAIVMQESGEVKLRPEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQT 715
Cdd:COG0457 149 NLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALA 228
|
250
....*....|....*..
gi 224809432 716 AKELKALPILEELLRYY 732
Cdd:COG0457 229 LLLALRLAALALYQYRA 245
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
556-746 |
6.38e-34 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 130.51 E-value: 6.38e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 556 ISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALF 635
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 636 NSAIVMQESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQT 715
Cdd:COG0457 81 NLGLALQALGRYE---EALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
170 180 190
....*....|....*....|....*....|.
gi 224809432 716 AKELKALPILEELLRYYPDHIKGLILKGDIL 746
Cdd:COG0457 158 GRYEEALELLEKLEAAALAALLAAALGEAAL 188
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
434-698 |
3.30e-33 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 129.46 E-value: 3.30e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 434 LFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqi 513
Cdd:COG2956 30 LLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL---------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 514 ipgkKYAARIAPNHLNVYINLANlIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELD 593
Cdd:COG2956 100 ----EKLLELDPDDAEALRLLAE-IYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 594 RNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPLDANgYFN 673
Cdd:COG2956 175 PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPE---EALELLRKALELDPSDDL-LLA 250
|
250 260
....*....|....*....|....*
gi 224809432 674 LGMLAMDDKKDNEAEIWMKKAIKLQ 698
Cdd:COG2956 251 LADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
449-730 |
5.75e-33 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 128.69 E-value: 5.75e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 449 WNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAARIAPNHL 528
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIH--------------QKLLERDPDRA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 529 NVYINLANL-IRANesRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVH 607
Cdd:COG2956 77 EALLELAQDyLKAG--LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELY 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 608 IELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEA 687
Cdd:COG2956 155 LEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYE---EAIAALERALEQDPDYLPALPRLAELYEKLGDPEEA 231
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 224809432 688 EIWMKKAIKLQADfRSALFNLALLYSQTAKELKALPILEELLR 730
Cdd:COG2956 232 LELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
536-799 |
6.51e-32 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 125.61 E-value: 6.51e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 536 NLIRANEsrLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNE 615
Cdd:COG2956 17 NYLLNGQ--PDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 616 ALKNFNRALELNPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAI 695
Cdd:COG2956 95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWE---KAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 696 KLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQkKDILGAKKCFERILEMDPSNVQgKH 775
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL-GDPEEALELLRKALELDPSDDL-LL 249
|
250 260
....*....|....*....|....
gi 224809432 776 NLCVVYFEEKDLLKAERCLLETLA 799
Cdd:COG2956 250 ALADLLERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
566-802 |
1.21e-31 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 124.84 E-value: 1.21e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 566 YISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESG 645
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 646 EVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPIL 725
Cdd:COG2956 91 LLD---RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 224809432 726 EELLRYYPDHIKGLILKGDILMnQKKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAP 802
Cdd:COG2956 168 EKALKLDPDCARALLLLAELYL-EQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
445-673 |
7.38e-26 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 113.93 E-value: 7.38e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 445 NAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAARIA 524
Cdd:COG3914 43 LALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALY--------------RRALALN 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 525 PNHLNVYINLANLIRANEsRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLA 604
Cdd:COG3914 109 PDNAEALFNLGNLLLALG-RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 224809432 605 IVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKLRPEARKRLLSYINEEPLDANGYFN 673
Cdd:COG3914 188 NALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALL 256
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
435-802 |
7.40e-25 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 111.33 E-value: 7.40e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 435 FMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqii 514
Cdd:TIGR02917 488 FEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWL----------- 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 515 pgkKYAARIAPNHLNVYINLANLIRANeSRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDR 594
Cdd:TIGR02917 557 ---EKAAELNPQEIEPALALAQYYLGK-GQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP 632
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 595 NNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGevklRPEARKRLLSYI-NEEPLDANGYFN 673
Cdd:TIGR02917 633 DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK----RTESAKKIAKSLqKQHPKAALGFEL 708
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 674 LGMLAMDDKKDNEAEIWMKKAIKLQADfRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQKKDI 753
Cdd:TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD 787
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 224809432 754 LGAKKcFERILEMDPSNVQGKHNLCVVYFEEKDlLKAERCLLETLALAP 802
Cdd:TIGR02917 788 KAIKH-YQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAP 834
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
438-808 |
6.82e-24 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 108.25 E-value: 6.82e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 438 ALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAE----------------- 500
Cdd:TIGR02917 185 VLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEkhadallkkapnsplah 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 501 -----------------ESYMMAKSLMPQIIPGKKYAARI---------APNHLNVY----------INLANLIRANESR 544
Cdd:TIGR02917 265 ylkalvdfqkknyedarETLQDALKSAPEYLPALLLAGASeyqlgnleqAYQYLNQIlkyapnshqaRRLLASIQLRLGR 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 545 LEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRAL 624
Cdd:TIGR02917 345 VDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAA 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 625 ELNPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSA 704
Cdd:TIGR02917 425 QLDPELGRADLLLILSYLRSGQFD---KALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 705 LFNLALLYSQTAKELKALPILEELLRYYPDHIKgLILKGDILMNQKKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEE 784
Cdd:TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKNLR-AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGK 580
|
410 420
....*....|....*....|....*
gi 224809432 785 KDLLKAERCLLETLALAP-HEEYIQ 808
Cdd:TIGR02917 581 GQLKKALAILNEAADAAPdSPEAWL 605
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
528-665 |
7.96e-23 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 95.26 E-value: 7.96e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 528 LNVYINLANLIRANEsRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVH 607
Cdd:COG4783 4 AEALYALAQALLLAG-DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 224809432 608 IELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEvklRPEARKRLLSYINEEP 665
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGR---PDEAIAALEKALELDP 137
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
479-630 |
1.34e-22 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 94.49 E-value: 1.34e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 479 DIGAHMNVGRTYKNLNRTKEAEEsymmaksLMPQIIpgkkyaaRIAPNHLNVYINLANlIRANESRLEEADQLYRQAISM 558
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEA-------LLEKAL-------ELDPDNPEAFALLGE-ILLQLGDLDEAIVLLHEALEL 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 224809432 559 RPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKH 630
Cdd:COG4783 68 DPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
438-792 |
6.61e-22 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 102.08 E-value: 6.61e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 438 ALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgk 517
Cdd:TIGR02917 355 ALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADL-------------- 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 518 KYAARIAPNHLNVYINLA-NLIRANESrlEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNN 596
Cdd:TIGR02917 421 ETAAQLDPELGRADLLLIlSYLRSGQF--DKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDF 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 597 ADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGevklRPEARKRLLSY-INEEPLDANGYFNLG 675
Cdd:TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG----NEEEAVAWLEKaAELNPQEIEPALALA 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 676 MLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQkKDILG 755
Cdd:TIGR02917 575 QYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM-KNYAK 653
|
330 340 350
....*....|....*....|....*....|....*..
gi 224809432 756 AKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAER 792
Cdd:TIGR02917 654 AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK 690
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
547-679 |
2.39e-21 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 90.45 E-value: 2.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 547 EADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALEL 626
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 224809432 627 NPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAM 679
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYA---EAIAAWQKLLALLPADAPARLLEASIAE 130
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
520-629 |
1.42e-20 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 88.52 E-value: 1.42e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 520 AARIAPNHLNVYINLANlIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADL 599
Cdd:COG4235 9 ALAANPNDAEGWLLLGR-AYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87
|
90 100 110
....*....|....*....|....*....|
gi 224809432 600 WYNLAIVHIELKEPNEALKNFNRALELNPK 629
Cdd:COG4235 88 LYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
661-817 |
2.72e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 91.22 E-value: 2.72e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 661 INEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLI 740
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 224809432 741 LKGDILMNQKkDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHEEYIQRHLNIVRDK 817
Cdd:COG0457 81 NLGLALQALG-RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEK 156
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
405-657 |
6.40e-20 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 95.06 E-value: 6.40e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 405 LSWICLSMVILTHSLKTFHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHM 484
Cdd:COG3914 71 AAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 485 NVGRTYKNLNRTKEAEESYMMakslmpqiipgkkyAARIAPNHLNVYINLANLIRANeSRLEEADQLYRQAISMRPDFKQ 564
Cdd:COG3914 151 NLGEALRRLGRLEEAIAALRR--------------ALELDPDNAEALNNLGNALQDL-GRLEEAIAAYRRALELDPDNAD 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 565 AYISRGELLLKMNK--PLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSaivmq 642
Cdd:COG3914 216 AHSNLLFALRQACDweVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALARAWAQLVAAAAAPELPPPPN----- 290
|
250
....*....|....*
gi 224809432 643 esgevklRPEARKRL 657
Cdd:COG3914 291 -------PRDPDRKL 298
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
520-808 |
1.54e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 93.90 E-value: 1.54e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 520 AARIAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMnkplkAKEAYLKALELDRNNADL 599
Cdd:COG3914 6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLAL-----AAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 600 WYNLAIVHIELKEPNEALKNFNRALELNPKHKLAlfnsaivmqesgevklrpearkrllsyineepldangYFNLGMLAM 679
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALALNPDNAEA-------------------------------------LFNLGNLLL 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 680 DDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQkKDILGAKKC 759
Cdd:COG3914 124 ALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDL-GRLEEAIAA 202
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 224809432 760 FERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHEEYIQ 808
Cdd:COG3914 203 YRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELS 251
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
442-803 |
2.07e-19 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 93.99 E-value: 2.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 442 NKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEE-------------------- 501
Cdd:TIGR02917 121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARAlidevltadpgnvdalllkg 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 502 SYMMAKSLMPQIIPGKKYAARIAPNHLNVYINLAN-LIRANEsrLEEADQlyrQAISMRPDFKQ----AYIsRGELLLKM 576
Cdd:TIGR02917 201 DLLLSLGNIELALAAYRKAIALRPNNIAVLLALATiLIEAGE--FEEAEK---HADALLKKAPNsplaHYL-KALVDFQK 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 577 NKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLAL------------FNSAIV---- 640
Cdd:TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARrllasiqlrlgrVDEAIAtlsp 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 641 -----------MQESGEVKLR---PEARKRLLSYINE-EPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSAL 705
Cdd:TIGR02917 355 algldpddpaaLSLLGEAYLAlgdFEKAAEYLAKATElDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRAD 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 706 FNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNqKKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEK 785
Cdd:TIGR02917 435 LLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLG-KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEG 513
|
410
....*....|....*...
gi 224809432 786 DLLKAERCLLETLALAPH 803
Cdd:TIGR02917 514 NPDDAIQRFEKVLTIDPK 531
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
499-628 |
3.84e-19 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 85.40 E-value: 3.84e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 499 AEESYMMAKSLMPQIIPGKKYAARIAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNK 578
Cdd:COG5010 24 VEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGD 103
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 224809432 579 PLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNP 628
Cdd:COG5010 104 KDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
501-676 |
6.04e-19 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 86.51 E-value: 6.04e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 501 ESYMMAKSLMPQIIP--GKKYAARIAPNHLNVYINLANLiRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNK 578
Cdd:COG4785 44 LALALAAAALAAAALaaERIDRALALPDLAQLYYERGVA-YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGD 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 579 PLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGevklRPEARKRLL 658
Cdd:COG4785 123 YDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLD----PEKALALLL 198
|
170 180
....*....|....*....|....
gi 224809432 659 SYI------NEEPLDANGYFNLGM 676
Cdd:COG4785 199 EDWatayllQGDTEEARELFKLAL 222
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
582-811 |
1.09e-17 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 88.13 E-value: 1.09e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 582 AKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEvklRPEARKRLLSYI 661
Cdd:COG3914 2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGE---AAAAAAALLLLA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 662 NEEPLDANGYFNLGmlamddkKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLIL 741
Cdd:COG3914 79 ALLELAALLLQALG-------RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLN 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 742 KGDILMNQKkDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHEEYIQRHL 811
Cdd:COG3914 152 LGEALRRLG-RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
544-629 |
1.26e-17 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 78.67 E-value: 1.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 544 RLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAkEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRA 623
Cdd:COG3063 7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85
|
....*.
gi 224809432 624 LELNPK 629
Cdd:COG3063 86 LELDPS 91
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
600-803 |
1.31e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 84.01 E-value: 1.31e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 600 WYNLAIVHIELKEPNEALKNFNRALELNPKHKLAlfnsaivmqesgevklrpearkrllsyineepldangYFNLGMLAM 679
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEA-------------------------------------HLALGNLYR 53
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 680 DDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMnQKKDILGAKKC 759
Cdd:COG2956 54 RRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYE-QEGDWEKAIEV 132
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 224809432 760 FERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPH 803
Cdd:COG2956 133 LERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPD 176
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
531-666 |
3.11e-17 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 79.62 E-value: 3.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 531 YINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIEL 610
Cdd:COG5010 22 TLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRS 101
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 224809432 611 KEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPL 666
Cdd:COG5010 102 GDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD---EAKAALQRALGTSPL 154
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
597-770 |
7.40e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 77.92 E-value: 7.40e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 597 ADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLAlfnsaivmqesgevklrpearkrllsyineepldangYFNLGM 676
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA-------------------------------------FALLGE 46
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 677 LAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQkKDILGA 756
Cdd:COG4783 47 ILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL-GRPDEA 125
|
170
....*....|....
gi 224809432 757 KKCFERILEMDPSN 770
Cdd:COG4783 126 IAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
464-598 |
9.91e-17 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 77.35 E-value: 9.91e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 464 RALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAARIAPNHLNVYINLAN-LIRANE 542
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAY--------------EKALRLDPDNADALLDLAEaLLAAGD 66
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 224809432 543 SrlEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNAD 598
Cdd:COG4235 67 T--EEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
497-811 |
9.96e-17 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 85.14 E-value: 9.96e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 497 KEAEESYMMAKSLMPQIIPGK-----KYAARIAPNHLNVYINLANL------IRANESRLEEADQLYRQAISMRPDFKQA 565
Cdd:TIGR02917 20 QSPEELIEAAKSYLQKNKYKAaiiqlKNALQKDPNDAEARFLLGKIylalgdYAAAEKELRKALSLGYPKNQVLPLLARA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 566 YISRGE----LLLKMNKPLKAKEAYLKALELdrnnadlwynLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVM 641
Cdd:TIGR02917 100 YLLQGKfqqvLDELPGKTLLDDEGAAELLAL----------RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 642 QESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKA 721
Cdd:TIGR02917 170 LAENRFD---EARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 722 LPILEELLRYYPDHIKGLILKGDILMnQKKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALA 801
Cdd:TIGR02917 247 EKHADALLKKAPNSPLAHYLKALVDF-QKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA 325
|
330
....*....|
gi 224809432 802 PHEEYIQRHL 811
Cdd:TIGR02917 326 PNSHQARRLL 335
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
572-665 |
4.18e-16 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 74.44 E-value: 4.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 572 LLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKnFNRALELNPKHKLALFNSAIVMQESGEVKlrp 651
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD--- 76
|
90
....*....|....
gi 224809432 652 EARKRLLSYINEEP 665
Cdd:COG3063 77 EALAYLERALELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
652-770 |
4.24e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 75.43 E-value: 4.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 652 EARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRY 731
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*....
gi 224809432 732 YPDHIKGLILKGDILMnQKKDILGAKKCFERILEMDPSN 770
Cdd:COG4235 81 DPDNPEALYLLGLAAF-QQGDYAEAIAAWQKLLALLPAD 118
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
581-745 |
4.72e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 75.43 E-value: 4.72e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 581 KAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKhklalfnsaivmqesgevklrpearkrllsy 660
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD------------------------------- 49
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 661 ineeplDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLI 740
Cdd:COG4235 50 ------NADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
....*
gi 224809432 741 LKGDI 745
Cdd:COG4235 124 LEASI 128
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
427-562 |
7.12e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 75.23 E-value: 7.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 427 DWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmma 506
Cdd:COG4783 19 DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALL--- 95
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 224809432 507 kslmpqiipgkKYAARIAPNHLNVYINLANLIRANEsRLEEADQLYRQAISMRPDF 562
Cdd:COG4783 96 -----------EKALKLDPEHPEAYLRLARAYRALG-RPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
667-804 |
1.16e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 74.84 E-value: 1.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 667 DANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDIL 746
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 224809432 747 MNQkKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHE 804
Cdd:COG4783 83 LKA-GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
443-799 |
1.89e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 81.28 E-value: 1.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 443 KNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAAR 522
Cdd:TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF--------------EKVLT 527
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 523 IAPNHLNVYINLANL--IRANESR----LEEADQLYRQAISMRPDFKQAYISRGEL------------------------ 572
Cdd:TIGR02917 528 IDPKNLRAILALAGLylRTGNEEEavawLEKAAELNPQEIEPALALAQYYLGKGQLkkalailneaadaapdspeawlml 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 573 --LLKMNKPL-KAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLAL------------FNS 637
Cdd:TIGR02917 608 grAQLAAGDLnKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQiglaqlllaakrTES 687
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 638 AI----VMQES-----------GEVKLR-------------------------------------PEARKRLLSYINEEP 665
Cdd:TIGR02917 688 AKkiakSLQKQhpkaalgfeleGDLYLRqkdypaaiqayrkalkrapssqnaiklhrallasgntAEAVKTLEAWLKTHP 767
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 666 LDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTaKELKALPILEELLRYYPDHIKGLILKGDI 745
Cdd:TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKLAPNIPAILDTLGWL 846
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 224809432 746 LMnQKKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAeRCLLETLA 799
Cdd:TIGR02917 847 LV-EKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA-RKELDKLL 898
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
489-766 |
1.12e-14 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 78.10 E-value: 1.12e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 489 TYKNLNRTKEAEESYMMA------KSLMPQIIPGKKYAARIAPN---------HLNVYINLANLIRANESRLEEADQLYR 553
Cdd:TIGR00990 276 RPAGLEDSNELDEETGNGqlqlglKSPESKADESYEEAARAFEKaldlgklgeKEAIALNLRGTFKCLKGKHLEALADLS 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 554 QAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLA 633
Cdd:TIGR00990 356 KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 634 LFNSAIVMQESGEVKLRPEARKRLLSYINEEPlDANGYFnlGMLAMDDKKDNEAEIWMKKAIKLQADFR------SALFN 707
Cdd:TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNFPEAP-DVYNYY--GELLLDQNKFDEAIEKFDTAIELEKETKpmymnvLPLIN 512
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 708 LALLYSQTAKEL-KALPILEELLRYYPDHIKGLILKGDILMnQKKDILGAKKCFERILEM 766
Cdd:TIGR00990 513 KALALFQWKQDFiEAENLCEKALIIDPECDIAVATMAQLLL-QQGDVDEALKLFERAAEL 571
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
423-639 |
1.78e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 70.71 E-value: 1.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 423 HRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFL------QATHVQPDDIGAHMNVGRTYKNLNRT 496
Cdd:COG4785 10 LALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAAlaaeriDRALALPDLAQLYYERGVAYDSLGDY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 497 KEAEESYMMAKSLMPqiipgkKYAAriapnhlnVYINLAnLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKM 576
Cdd:COG4785 90 DLAIADFDQALELDP------DLAE--------AYNNRG-LAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 224809432 577 NKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKePNEALKNFNRA------LELNPKHKLALFNSAI 639
Cdd:COG4785 155 GRYELAIADLEKALELDPNDPERALWLYLAERKLD-PEKALALLLEDwataylLQGDTEEARELFKLAL 222
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
427-593 |
1.84e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 71.68 E-value: 1.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 427 DWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmma 506
Cdd:COG2956 125 DWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAAL--- 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 507 kslmpqiipgkKYAARIAPNHLNVYINLANLIRAnESRLEEADQLYRQAISMRPDfKQAYISRGELLLKMNKPLKAKEAY 586
Cdd:COG2956 202 -----------ERALEQDPDYLPALPRLAELYEK-LGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALL 268
|
....*..
gi 224809432 587 LKALELD 593
Cdd:COG2956 269 ERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
668-811 |
3.79e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 70.91 E-value: 3.79e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 668 ANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILM 747
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 224809432 748 NQKK-DilGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHEEYIQRHL 811
Cdd:COG2956 88 KAGLlD--RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL 150
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
438-572 |
4.37e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 66.95 E-value: 4.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 438 ALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgk 517
Cdd:COG4235 9 ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELL-------------- 74
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 224809432 518 KYAARIAPNHLNVYINLAnLIRANESRLEEADQLYRQAISMRPDFKQAYISRGEL 572
Cdd:COG4235 75 ERALALDPDNPEALYLLG-LAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
564-745 |
1.32e-12 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 68.52 E-value: 1.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 564 QAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQE 643
Cdd:TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 644 SGEVKlrpEARKRLLSYINEE--PLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKA 721
Cdd:TIGR02521 112 QGKYE---QAMQQFEQAIEDPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188
|
170 180
....*....|....*....|....
gi 224809432 722 LPILEELLRYYPDHIKGLILKGDI 745
Cdd:TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRI 212
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
421-511 |
5.03e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 64.60 E-value: 5.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 421 TFHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAE 500
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAK 142
|
90
....*....|.
gi 224809432 501 ESYMMAKSLMP 511
Cdd:COG5010 143 AALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
455-560 |
1.81e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 63.06 E-value: 1.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 455 ALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAARIAPNHLNVYINL 534
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYY--------------EKALALSPDNPNAYSNL 128
|
90 100
....*....|....*....|....*.
gi 224809432 535 AnLIRANESRLEEADQLYRQAISMRP 560
Cdd:COG5010 129 A-ALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
686-812 |
1.98e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 62.33 E-value: 1.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 686 EAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQKkDILGAKKCFERILE 765
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG-DTEEAEELLERALA 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 224809432 766 MDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHEE---YIQRHLN 812
Cdd:COG4235 80 LDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAparLLEASIA 129
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
544-698 |
3.55e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 62.29 E-value: 3.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 544 RLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRA 623
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 224809432 624 LELNPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQ 698
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKD---EAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
438-587 |
4.37e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 64.26 E-value: 4.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 438 ALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYMmakslmpQIIPGK 517
Cdd:COG0457 102 ALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLE-------KLEAAA 174
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 518 KYAARIAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYL 587
Cdd:COG0457 175 LAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
703-811 |
4.45e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 61.36 E-value: 4.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 703 SALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQKkDILGAKKCFERILEMDPSNVQGKHNLCVVYF 782
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLG-DLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100
....*....|....*....|....*....
gi 224809432 783 EEKDLLKAERCLLETLALAPHEEYIQRHL 811
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRL 112
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
455-561 |
5.18e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 59.80 E-value: 5.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 455 ALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEEsYmmakslmpqiipgkKYAARIAPNHLNVYINL 534
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-L--------------EKALKLDPNNAEALLNL 65
|
90 100
....*....|....*....|....*..
gi 224809432 535 AnLIRANESRLEEADQLYRQAISMRPD 561
Cdd:COG3063 66 A-ELLLELGDYDEALAYLERALELDPS 91
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
442-625 |
7.25e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 59.93 E-value: 7.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 442 NKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAA 521
Cdd:COG4785 69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDF--------------DRAL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 522 RIAPNHLNVYINLAnLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNkPLKAKEAYLKAleldrnnadlWy 601
Cdd:COG4785 135 ELDPDYAYAYLNRG-IALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLD-PEKALALLLED----------W- 201
|
170 180
....*....|....*....|....
gi 224809432 602 nlAIVHIELKEPNEALKNFNRALE 625
Cdd:COG4785 202 --ATAYLLQGDTEEARELFKLALA 223
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
519-783 |
1.18e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 59.54 E-value: 1.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 519 YAARIAPNHLNVYINLANLIRANES--RLEEADQLYRQAISMRPDFKQAYISRGELLLkmnkplkAKEAYLKALELDrNN 596
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILlaALLFAAVLALAIALADLALALAAAALAAAAL-------AAERIDRALALP-DL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 597 ADLWYNLAIVHIELKEPNEALKNFNRALELNPKhklalfnsaivmqesgevklRPEArkrllsyineepldangYFNLGM 676
Cdd:COG4785 73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPD--------------------LAEA-----------------YNNRGL 115
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 677 LAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGdiLMNQKKDILGA 756
Cdd:COG4785 116 AYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLY--LAERKLDPEKA 193
|
250 260
....*....|....*....|....*..
gi 224809432 757 KKCFERILEMDPSNvQGKHNLCVVYFE 783
Cdd:COG4785 194 LALLLEDWATAYLL-QGDTEEARELFK 219
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
606-734 |
3.81e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.41 E-value: 3.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 606 VHIELKEPNEALKNFNRALELNPKhklalfnsaivmqesgevklrpearkrllsyineeplDANGYFNLGMLAMDDKKDN 685
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD-------------------------------------NADALNNLGLLLLEQGRYD 43
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 224809432 686 EAEIWmKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPD 734
Cdd:COG3063 44 EAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
427-591 |
4.49e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 57.62 E-value: 4.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 427 DWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYMMA 506
Cdd:COG4785 88 DYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKA 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 507 KSLMPQiipgkkyaarIAPNHLNVYINLANLiranesRLEEADQLYRQAISMrpdfkqAYISRGElllkmnkPLKAKEAY 586
Cdd:COG4785 168 LELDPN----------DPERALWLYLAERKL------DPEKALALLLEDWAT------AYLLQGD-------TEEARELF 218
|
....*
gi 224809432 587 LKALE 591
Cdd:COG4785 219 KLALA 223
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
677-772 |
9.62e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.64 E-value: 9.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 677 LAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPiLEELLRYYPDHIKGLILKGDILMNQkKDILGA 756
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL-GDYDEA 78
|
90
....*....|....*.
gi 224809432 757 KKCFERILEMDPSNVQ 772
Cdd:COG3063 79 LAYLERALELDPSALR 94
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
573-665 |
2.10e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 53.07 E-value: 2.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 573 LLKMNKPLKAKEAYLKALELDRNN---ADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKL---ALFNSAIVMQESGE 646
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGD 82
|
90
....*....|....*....
gi 224809432 647 vklRPEARKRLLSYINEEP 665
Cdd:COG1729 83 ---YDKARATLEELIKKYP 98
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
697-811 |
2.97e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 55.89 E-value: 2.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 697 LQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMnQKKDILGAKKCFERILEMDPSNVQGKHN 776
Cdd:COG2956 3 LPVAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYR-RRGEYDRAIRIHQKLLERDPDRAEALLE 81
|
90 100 110
....*....|....*....|....*....|....*
gi 224809432 777 LCVVYFEEKDLLKAERCLLETLALAPHEEYIQRHL 811
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLL 116
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
649-802 |
3.95e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.43 E-value: 3.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 649 LRPEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEEL 728
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 224809432 729 LRYYPDHIKGLILKGDILMnQKKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAP 802
Cdd:COG5010 81 LQLDPNNPELYYNLALLYS-RSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
438-524 |
4.80e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 52.70 E-value: 4.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 438 ALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYMMAKSLMPQIIPGK 517
Cdd:COG4235 43 ALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
....*..
gi 224809432 518 KYAARIA 524
Cdd:COG4235 123 LLEASIA 129
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
597-630 |
6.27e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 49.34 E-value: 6.27e-08
10 20 30
....*....|....*....|....*....|....
gi 224809432 597 ADLWYNLAIVHIELKEPNEALKNFNRALELNPKH 630
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
711-802 |
6.32e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 50.94 E-value: 6.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 711 LYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQKkDILGAKKcFERILEMDPSNVQGKHNLCVVYFEEKDLLKA 790
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG-RYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEA 78
|
90
....*....|..
gi 224809432 791 ERCLLETLALAP 802
Cdd:COG3063 79 LAYLERALELDP 90
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
541-633 |
7.13e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.53 E-value: 7.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 541 NESRLEEADQLYRQAISMRPDFK---QAYISRGELLLKMNKPLKAKEAYLKALELDRNN---ADLWYNLAIVHIELKEPN 614
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDYD 84
|
90
....*....|....*....
gi 224809432 615 EALKNFNRALELNPKHKLA 633
Cdd:COG1729 85 KARATLEELIKKYPDSEAA 103
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
564-765 |
1.02e-07 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 54.56 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 564 QAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPkhklalfnsaivmqE 643
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP--------------D 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 644 SGEVKlrpearkrllsYIN----EEPLDANGYFNLG---MLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLY---- 712
Cdd:cd24142 67 GGYEK-----------YLYlgqlSGGEEALQYYEKGieiLEEELQALQAASAEAEEEAEELKRKLSSALCALAEIYmtdl 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 224809432 713 ------SQTAKELkalpiLEELLRYYPDHIKGLILKGDILMNQkKDILGAKKCFERILE 765
Cdd:cd24142 136 cdepdaEQRCEEL-----ITKALELDPTNPEALQTLASLRISQ-QRPDEAKEALRRSLE 188
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
422-511 |
1.02e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 50.55 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 422 FHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKyFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEE 501
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 224809432 502 SYMMAKSLMP 511
Cdd:COG3063 81 YLERALELDP 90
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
697-817 |
1.58e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 51.88 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 697 LQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQKKDILGAKKCFERILEMDPSNVQGKHN 776
Cdd:COG5010 14 LLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYN 93
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 224809432 777 LCVVYFEEKDLLKAERCLLETLALAPHEEYIQRHLNIVRDK 817
Cdd:COG5010 94 LALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLS 134
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
581-697 |
3.26e-07 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 51.21 E-value: 3.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 581 KAKEAYLKALELDRNNAD---LWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEvKLRPEARKRl 657
Cdd:PRK02603 53 EALENYEEALKLEEDPNDrsyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE-KAEEAGDQD- 130
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 224809432 658 lsyineeplDANGYFnlgmlamddkkDNEAEIWmKKAIKL 697
Cdd:PRK02603 131 ---------EAEALF-----------DKAAEYW-KQAIRL 149
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
597-630 |
6.65e-07 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 46.29 E-value: 6.65e-07
10 20 30
....*....|....*....|....*....|....
gi 224809432 597 ADLWYNLAIVHIELKEPNEALKNFNRALELNPKH 630
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
597-629 |
1.27e-06 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 45.59 E-value: 1.27e-06
10 20 30
....*....|....*....|....*....|...
gi 224809432 597 ADLWYNLAIVHIELKEPNEALKNFNRALELNPK 629
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
565-629 |
3.75e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.46 E-value: 3.75e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 224809432 565 AYISRGELLLKMNKPLKAKEAYLKALELDR--------NNADLWYNLAIVHIELKEPNEALKNFNRALELNPK 629
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARrllgpdhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
602-818 |
5.70e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 48.37 E-value: 5.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 602 NLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKLRPEARKRLLSYINEE---PLDANGYFNLGMLA 678
Cdd:COG4785 4 LALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAlalPDLAQLYYERGVAY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 679 MDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALpileellryypdhikglilkgdilmnqkKDilgakk 758
Cdd:COG4785 84 DSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAAL----------------------------ED------ 129
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 759 cFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHEEYIQRHLNIVRDKI 818
Cdd:COG4785 130 -FDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKL 188
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
461-730 |
6.65e-06 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 49.14 E-value: 6.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 461 NFERALKYFLQATHVQPD-DIGAHMNVGRTYKNLNRTKEAEESymmAKSLmPQIIPGKKYAARIApnhLNVYINLAN--- 536
Cdd:COG3071 65 DYERRDEYLAQALELAPEaELAVLLTRAELLLDQGQAEQALAT---LEAL-RAGAPRHPQVLRLL---LQAYRQLGDwee 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 537 -------LIRANESRLEEADQLYRQAISmrpdfkqayisrgELLLKMNKPLKAKEAYLKAL-ELDRNNADLWYNLAIVHI 608
Cdd:COG3071 138 llellpaLRKHKALSAEEAQALERRAYL-------------GLLRQAARDAEALKALWKALpRAERRDPELAAAYARALI 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 609 ELKEPNEALKNFNRALELNPKHKLALfnsaiVMQESgEVKLRPEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAE 688
Cdd:COG3071 205 ALGDHDEAERLLREALKRQWDPRLVR-----LYGRL-QGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAR 278
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 224809432 689 IWMKKAIKLQADfRSALFNLALLYSQTAKELKALPILEELLR 730
Cdd:COG3071 279 EYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALA 319
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
585-618 |
6.73e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 43.69 E-value: 6.73e-06
10 20 30
....*....|....*....|....*....|....
gi 224809432 585 AYLKALELDRNNADLWYNLAIVHIELKEPNEALK 618
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
432-599 |
1.70e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 48.44 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 432 YTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYMMAKSLMP 511
Cdd:TIGR00990 385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 512 QI--IPG----------------KKYAARIA------PNHLNV--YINLANLIRANESRLEEADQLYRQAISMRPDFKQA 565
Cdd:TIGR00990 465 EApdVYNyygellldqnkfdeaiEKFDTAIEleketkPMYMNVlpLINKALALFQWKQDFIEAENLCEKALIIDPECDIA 544
|
170 180 190
....*....|....*....|....*....|....
gi 224809432 566 YISRGELLLKMNKPLKAKEAYLKALELDRNNADL 599
Cdd:TIGR00990 545 VATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
651-735 |
2.50e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.21 E-value: 2.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 651 PEARKRLLSYINEEP---LDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQAD---FRSALFNLALLYSQTAKELKALPI 724
Cdd:COG1729 10 DEAIAAFKAFLKRYPnspLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDKARAT 89
|
90
....*....|.
gi 224809432 725 LEELLRYYPDH 735
Cdd:COG1729 90 LEELIKKYPDS 100
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
564-596 |
8.87e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.48 E-value: 8.87e-05
10 20 30
....*....|....*....|....*....|...
gi 224809432 564 QAYISRGELLLKMNKPLKAKEAYLKALELDRNN 596
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
564-596 |
1.30e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.74 E-value: 1.30e-04
10 20 30
....*....|....*....|....*....|...
gi 224809432 564 QAYISRGELLLKMNKPLKAKEAYLKALELDRNN 596
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
564-607 |
1.33e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 40.15 E-value: 1.33e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 224809432 564 QAYISRGELLlkmnkplKAKEAYLKALELDRNNADLWYNLAIVH 607
Cdd:pfam13414 2 DAYYEQGKYE-------EAIEAYKKALKLDPDNPEAYYNLGLAY 38
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
582-633 |
1.34e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 40.65 E-value: 1.34e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 224809432 582 AKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLA 633
Cdd:pfam14559 7 ALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRY 58
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
446-479 |
2.91e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.94 E-value: 2.91e-04
10 20 30
....*....|....*....|....*....|....
gi 224809432 446 AKLWNNVGHALENEKNFERALKYFLQATHVQPDD 479
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
581-628 |
3.24e-04 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 44.01 E-value: 3.24e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 581 KAKEA------------YLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNP 628
Cdd:PLN03088 8 KAKEAfvdddfalavdlYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP 67
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
582-697 |
4.34e-04 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 41.92 E-value: 4.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 582 AKEAYLKALELDRNNAD---LWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKLRpearkrll 658
Cdd:CHL00033 54 ALQNYYEAMRLEIDPYDrsyILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIE-------- 125
|
90 100 110
....*....|....*....|....*....|....*....
gi 224809432 659 syiNEEPLDANGYFnlgmlamddkkDNEAEIWmKKAIKL 697
Cdd:CHL00033 126 ---QGDSEIAEAWF-----------DQAAEYW-KQAIAL 149
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
569-630 |
5.37e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 39.24 E-value: 5.37e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 224809432 569 RGELLLKMNKPLKAKEAYLKALELDRN---NADLWYNLAIVHIELKEPNEALKNFNRALELNPKH 630
Cdd:pfam13432 3 LARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
445-524 |
5.46e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.36 E-value: 5.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 445 NAKLWnnVGHALENEKNFERALKYFLQATHVQPDDI---GAHMNVGRTYKNLNRTKEAEESYMMAKSLMPQIIPGKKYAA 521
Cdd:COG1729 31 DALYW--LGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARA 108
|
...
gi 224809432 522 RIA 524
Cdd:COG1729 109 RLA 111
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
676-769 |
6.25e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.36 E-value: 6.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 676 MLAMDDKKDNEAEIWMKKAIKLQADFR---SALFNLALLYSQTAKELKALPILEELLRYYPDHIK---GLILKGDILMNQ 749
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLEL 80
|
90 100
....*....|....*....|
gi 224809432 750 kKDILGAKKCFERILEMDPS 769
Cdd:COG1729 81 -GDYDKARATLEELIKKYPD 99
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
446-479 |
6.28e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.81 E-value: 6.28e-04
10 20 30
....*....|....*....|....*....|....
gi 224809432 446 AKLWNNVGHALENEKNFERALKYFLQATHVQPDD 479
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
597-629 |
7.84e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 37.76 E-value: 7.84e-04
10 20 30
....*....|....*....|....*....|...
gi 224809432 597 ADLWYNLAIVHIELKEPNEALKNFNRALELNPK 629
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
570-631 |
1.10e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 41.79 E-value: 1.10e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 224809432 570 GELLLKMNKPLKAKEAYLKALE-LDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHK 631
Cdd:COG4700 96 ADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFK 158
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
542-604 |
1.29e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.95 E-value: 1.29e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 224809432 542 ESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLA 604
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLA 63
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
495-665 |
1.88e-03 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 41.72 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 495 RTKEAEESYMMAKSLmpQIIPGKKYAARIApnHLnvYINLANLIRANeSRLEEADQLYRQAISMRPDFKQAYISRGELLL 574
Cdd:PRK11788 153 QEKDWQKAIDVAERL--EKLGGDSLRVEIA--HF--YCELAQQALAR-GDLDAARALLKKALAADPQCVRASILLGDLAL 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 575 KMNKPLKAKEAYLKALELDRN----NADLWYNlaiVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGevklR 650
Cdd:PRK11788 226 AQGDYAAAIEALERVEEQDPEylseVLPKLME---CYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEG----P 298
|
170
....*....|....*
gi 224809432 651 PEARKRLLSYINEEP 665
Cdd:PRK11788 299 EAAQALLREQLRRHP 313
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
455-572 |
1.90e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.82 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 455 ALENEKNFERALKYFLQATHVQPDDI---GAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAARIAPNH---L 528
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAF--------------EKLLKRYPDSpkaP 67
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 224809432 529 NVYINLAnLIRANESRLEEADQLYRQAISMRPDFKQAYISRGEL 572
Cdd:COG1729 68 DALLKLG-LSYLELGDYDKARATLEELIKKYPDSEAAKEARARL 110
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
597-657 |
2.01e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 37.75 E-value: 2.01e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 224809432 597 ADLWYNLAIVHIELKEPNEALKNFNRALEL-----NPKHKL---ALFNSAIVMQESGEvklRPEARKRL 657
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllGPDHPLtatTLLNLGRLYLELGR---YEEALELL 68
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
564-595 |
4.09e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 35.45 E-value: 4.09e-03
10 20 30
....*....|....*....|....*....|..
gi 224809432 564 QAYISRGELLLKMNKPLKAKEAYLKALELDRN 595
Cdd:pfam13181 2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
461-626 |
4.48e-03 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 40.37 E-value: 4.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 461 NFERALKYFLQA-THVQPDD----IGAHMNVGRTYKNLNRTKEAEESYMMAKSLmpqiipgkkyaARiAPNHLNV----Y 531
Cdd:pfam17874 16 DAERALELAEQAlALLPEDDllarGLATFVLGEAYLCLGDLDAALQAMREAEAL-----------AR-RADSPHVtlwaL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 532 INLANLIRAnESRLEEADQLYRQAISMRPDFKQA--------YISRGELLLKMNKPLKAKEAYLKALELDRnnadLWYNL 603
Cdd:pfam17874 84 LQQGEILRA-QGRLHQALETYQQALQLARDHGLQhlplhgflLVGLADLLYEWNDLEEAEQHAQQGIQLGR----QWEPD 158
|
170 180 190
....*....|....*....|....*....|..
gi 224809432 604 AIVHIELK---------EPNEALKNFNRALEL 626
Cdd:pfam17874 159 AAVDAYVLlarialaqgELEEALTLLRRAELL 190
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
446-478 |
5.84e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.19 E-value: 5.84e-03
10 20 30
....*....|....*....|....*....|...
gi 224809432 446 AKLWNNVGHALENEKNFERALKYFLQATHVQPD 478
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_14 |
pfam13428 |
Tetratricopeptide repeat; |
597-638 |
6.36e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463874 [Multi-domain] Cd Length: 44 Bit Score: 35.48 E-value: 6.36e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 224809432 597 ADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSA 638
Cdd:pfam13428 1 PEALLALARALLALGDPDEALALLERALALDPDDPEAWLALA 42
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
565-595 |
6.57e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.19 E-value: 6.57e-03
10 20 30
....*....|....*....|....*....|.
gi 224809432 565 AYISRGELLLKMNKPLKAKEAYLKALELDRN 595
Cdd:pfam07719 3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
446-512 |
8.09e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.21 E-value: 8.09e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 224809432 446 AKLWNNVGHALENEKNFERALKYFLQA----------THvqPDDIGAHMNVGRTYKNLNRTKEAEESYMMAKSLMPQ 512
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKAleiarrllgpDH--PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
482-561 |
8.42e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.21 E-value: 8.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809432 482 AHMNVGRTYKNLNRTKEAEESYMMAKSLMpQIIPGKKYaariaPNHLNVYINLANLIRANEsRLEEADQLYRQAISMRPD 561
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIA-RRLLGPDH-----PLTATTLLNLGRLYLELG-RYEEALELLERALALAEK 77
|
|
| |
