NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|23308591|ref|NP_694542|]
View 

follicular dendritic cell secreted peptide precursor [Homo sapiens]

Protein Classification

FDC-SP domain-containing protein( domain architecture ID 10633581)

FDC-SP domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FDC-SP pfam15215
Follicular dendritic cell secreted peptide;
18-82 1.72e-20

Follicular dendritic cell secreted peptide;


:

Pssm-ID: 434542  Cd Length: 69  Bit Score: 77.04  E-value: 1.72e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 23308591   18 FPVSQDQEREKRSISDSDELASGFFVFPYPYPFRPLPPIPFPRFPW----FRRNFPIPIPESAPTTPLP 82
Cdd:pfam15215  1 FPVPEDQEREKRSASDSDELAEGFFFFPFGPPFGGLPPFFFPGFPWyyyyFRNNFLIPIPEIAPTTPLP 69
 
Name Accession Description Interval E-value
FDC-SP pfam15215
Follicular dendritic cell secreted peptide;
18-82 1.72e-20

Follicular dendritic cell secreted peptide;


Pssm-ID: 434542  Cd Length: 69  Bit Score: 77.04  E-value: 1.72e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 23308591   18 FPVSQDQEREKRSISDSDELASGFFVFPYPYPFRPLPPIPFPRFPW----FRRNFPIPIPESAPTTPLP 82
Cdd:pfam15215  1 FPVPEDQEREKRSASDSDELAEGFFFFPFGPPFGGLPPFFFPGFPWyyyyFRNNFLIPIPEIAPTTPLP 69
AimP_fam NF033802
lysogeny pheromone AimP family peptide; AimP is the quorum signaling-like peptide pheromone of ...
 1-39 4.69e-03

lysogeny pheromone AimP family peptide; AimP is the quorum signaling-like peptide pheromone of a phage system, called the arbitrium system, that detects environmental evidence of predecessor phage activity, in order to direct a lysis/lysogeny decision.


Pssm-ID: 411382  Cd Length: 43  Bit Score: 31.97  E-value: 4.69e-03
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 23308591   1 MKKVLLLITAILAVAVGFpVSQDQEREKRSISDSDELAS 39
Cdd:NF033802  1 MKKVFIGLTIVAALAVSF-VAGQQSVETASGDDDIEVAS 38
 
Name Accession Description Interval E-value
FDC-SP pfam15215
Follicular dendritic cell secreted peptide;
18-82 1.72e-20

Follicular dendritic cell secreted peptide;


Pssm-ID: 434542  Cd Length: 69  Bit Score: 77.04  E-value: 1.72e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 23308591   18 FPVSQDQEREKRSISDSDELASGFFVFPYPYPFRPLPPIPFPRFPW----FRRNFPIPIPESAPTTPLP 82
Cdd:pfam15215  1 FPVPEDQEREKRSASDSDELAEGFFFFPFGPPFGGLPPFFFPGFPWyyyyFRNNFLIPIPEIAPTTPLP 69
AimP_fam NF033802
lysogeny pheromone AimP family peptide; AimP is the quorum signaling-like peptide pheromone of ...
 1-39 4.69e-03

lysogeny pheromone AimP family peptide; AimP is the quorum signaling-like peptide pheromone of a phage system, called the arbitrium system, that detects environmental evidence of predecessor phage activity, in order to direct a lysis/lysogeny decision.


Pssm-ID: 411382  Cd Length: 43  Bit Score: 31.97  E-value: 4.69e-03
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 23308591   1 MKKVLLLITAILAVAVGFpVSQDQEREKRSISDSDELAS 39
Cdd:NF033802  1 MKKVFIGLTIVAALAVSF-VAGQQSVETASGDDDIEVAS 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH