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Conserved domains on  [gi|17561782|ref|NP_508026|]
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peptidylprolyl isomerase [Caenorhabditis elegans]

Protein Classification

FKBP-type peptidyl-prolyl cis-trans isomerase( domain architecture ID 10446594)

FKBP-type peptidyl-prolyl cis-trans isomerase acts as a PPIase that accelerates the folding of proteins

CATH:  3.10.50.40
EC:  5.2.1.8
Gene Ontology:  GO:0003755
SCOP:  4001062

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 20-117 1.13e-40

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 140.32  E-value: 1.13e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782  20 IKKEGQGVvKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDA 99
Cdd:COG0545   5 VLKEGTGA-KPKAGDTVTVHYTGTLLDGTVFDSSYDRGEPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPELAYGER 83

                        90
                ....*....|....*...
gi 17561782 100 GSPPKIPGGATLIFEVEL 117
Cdd:COG0545  84 GAGGVIPPNSTLVFEVEL 101
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
260-373 1.16e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.56  E-value: 1.16e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782 260 RGTMYLQKGNLKLAYNKYKRAEEVleyekstDPEkMAEretilngAYLNLSLVCSKQNEQLECIKWCDKVLETKPGNVKA 339
Cdd:COG0457  14 LGLAYRRLGRYEEAIEDYEKALEL-------DPD-DAE-------ALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA 78

                        90       100       110
                ....*....|....*....|....*....|....
gi 17561782 340 LYRKATALLTMNEVRDAMKLFEKIVEVEPENKAA 373
Cdd:COG0457  79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEA 112
 
Name Accession Description Interval E-value
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 20-117 1.13e-40

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 140.32  E-value: 1.13e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782  20 IKKEGQGVvKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDA 99
Cdd:COG0545   5 VLKEGTGA-KPKAGDTVTVHYTGTLLDGTVFDSSYDRGEPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPELAYGER 83

                        90
                ....*....|....*...
gi 17561782 100 GSPPKIPGGATLIFEVEL 117
Cdd:COG0545  84 GAGGVIPPNSTLVFEVEL 101
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
26-117 6.94e-39

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 135.40  E-value: 6.94e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782    26 GVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGS-PPK 104
Cdd:pfam00254   1 GPEKAKKGDRVTVHYTGTLEDGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLaGPV 80

                          90
                  ....*....|...
gi 17561782   105 IPGGATLIFEVEL 117
Cdd:pfam00254  81 IPPNATLVFEVEL 93
PRK10902 PRK10902
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
 11-128 2.39e-18

FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 236791 [Multi-domain]  Cd Length: 269  Bit Score: 84.43  E-value: 2.39e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782   11 KKDGGVLKLIKKEGQGVVkPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRgnVIKGWDLGVATMTKGEVAEFTI 90
Cdd:PRK10902 143 TTSTGLLYKVEKEGTGEA-PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGWTEGLKNIKKGGKIKLVI 219

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 17561782   91 RSDYGYGDAGSpPKIPGGATLIFEVELFewsaeDISPD 128
Cdd:PRK10902 220 PPELAYGKAGV-PGIPANSTLVFDVELL-----DVKPA 251
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
260-373 1.16e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.56  E-value: 1.16e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782 260 RGTMYLQKGNLKLAYNKYKRAEEVleyekstDPEkMAEretilngAYLNLSLVCSKQNEQLECIKWCDKVLETKPGNVKA 339
Cdd:COG0457  14 LGLAYRRLGRYEEAIEDYEKALEL-------DPD-DAE-------ALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA 78

                        90       100       110
                ....*....|....*....|....*....|....
gi 17561782 340 LYRKATALLTMNEVRDAMKLFEKIVEVEPENKAA 373
Cdd:COG0457  79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEA 112
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 258-370 1.23e-08

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 54.69  E-value: 1.23e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782  258 KDRGTMYLQKGNLKLAYNKYKRA----EEVLEYEKStDPEKMaeretilngayLNLSLVCSKQNEQLECIKWCDKVLETK 333
Cdd:NF040959  34 RDRAKMYRNKGISHAKKGRYDKAvrylEQVARIDPD-DVEAL-----------YRLGVAYLKTGQYDRAIKVLEKVLSLA 101

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 17561782  334 PGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPEN 370
Cdd:NF040959 102 PDHVKAAYRKGVALLKIKDYEKAVEDLEEALEEKPDN 138
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 231-373 1.57e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 53.55  E-value: 1.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782   231 IFLKEFEKVPAtwEMTAEEKLDAAKQAK---DRGTMYLQKGNLKLAYNKYKRAeevLEYEKSTDPEKMAEretilngAYL 307
Cdd:TIGR02917 101 LLQGKFQQVLD--ELPGKTLLDDEGAAEllaLRGLAYLGLGQLELAQKSYEQA---LAIDPRSLYAKLGL-------AQL 168

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17561782   308 NLSlvcskQNEQLECIKWCDKVLETKPGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPENKAA 373
Cdd:TIGR02917 169 ALA-----ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAV 229
TPR_19 pfam14559
Tetratricopeptide repeat;
327-375 4.91e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 38.33  E-value: 4.91e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 17561782   327 DKVLETKPGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPENKAAAQ 375
Cdd:pfam14559  12 EQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 321-370 1.87e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 39.92  E-value: 1.87e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 17561782 321 ECIKWCDKVLETKPGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPEN 370
Cdd:cd24142  18 LALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
 
Name Accession Description Interval E-value
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 20-117 1.13e-40

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 140.32  E-value: 1.13e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782  20 IKKEGQGVvKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDA 99
Cdd:COG0545   5 VLKEGTGA-KPKAGDTVTVHYTGTLLDGTVFDSSYDRGEPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPELAYGER 83

                        90
                ....*....|....*...
gi 17561782 100 GSPPKIPGGATLIFEVEL 117
Cdd:COG0545  84 GAGGVIPPNSTLVFEVEL 101
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
26-117 6.94e-39

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 135.40  E-value: 6.94e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782    26 GVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGS-PPK 104
Cdd:pfam00254   1 GPEKAKKGDRVTVHYTGTLEDGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLaGPV 80

                          90
                  ....*....|...
gi 17561782   105 IPGGATLIFEVEL 117
Cdd:pfam00254  81 IPPNATLVFEVEL 93
PRK10902 PRK10902
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
 11-128 2.39e-18

FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 236791 [Multi-domain]  Cd Length: 269  Bit Score: 84.43  E-value: 2.39e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782   11 KKDGGVLKLIKKEGQGVVkPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRgnVIKGWDLGVATMTKGEVAEFTI 90
Cdd:PRK10902 143 TTSTGLLYKVEKEGTGEA-PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGWTEGLKNIKKGGKIKLVI 219

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 17561782   91 RSDYGYGDAGSpPKIPGGATLIFEVELFewsaeDISPD 128
Cdd:PRK10902 220 PPELAYGKAGV-PGIPANSTLVFDVELL-----DVKPA 251
PRK11570 PRK11570
peptidyl-prolyl cis-trans isomerase; Provisional
 22-119 7.31e-15

peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 183207 [Multi-domain]  Cd Length: 206  Bit Score: 72.91  E-value: 7.31e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782   22 KEGQGVVkPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGrgNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGS 101
Cdd:PRK11570 110 TQGEGAI-PARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTIPHELAYGERGA 186

                         90
                 ....*....|....*...
gi 17561782  102 PPKIPGGATLIFEVELFE 119
Cdd:PRK11570 187 GASIPPFSTLVFEVELLE 204
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
260-373 1.16e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.56  E-value: 1.16e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782 260 RGTMYLQKGNLKLAYNKYKRAEEVleyekstDPEkMAEretilngAYLNLSLVCSKQNEQLECIKWCDKVLETKPGNVKA 339
Cdd:COG0457  14 LGLAYRRLGRYEEAIEDYEKALEL-------DPD-DAE-------ALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA 78

                        90       100       110
                ....*....|....*....|....*....|....
gi 17561782 340 LYRKATALLTMNEVRDAMKLFEKIVEVEPENKAA 373
Cdd:COG0457  79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEA 112
SlpA COG1047
Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein ...
 31-98 3.36e-10

Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440668 [Multi-domain]  Cd Length: 138  Bit Score: 57.80  E-value: 3.36e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17561782  31 TTGTTVKVHYVGTLENGTKFDSSRDRGDqFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGD 98
Cdd:COG1047   2 EKGDVVTLHYTLKLEDGEVFDSTFEGEP-LEFLHGAGQLIPGLEEALEGMEVGDKKTVTLPPEEAYGE 68
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
247-373 8.93e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 58.86  E-value: 8.93e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782 247 AEEKLDAA-KQAKDRGTMYLQKGNLKLAYNKYKRAEEvlEYEKS--TDPEkMAEretilngAYLNLSLVCSKQNEQLECI 323
Cdd:COG0457  27 AIEDYEKAlELDPDDAEALYNLGLAYLRLGRYEEALA--DYEQAleLDPD-DAE-------ALNNLGLALQALGRYEEAL 96

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 17561782 324 KWCDKVLETKPGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPENKAA 373
Cdd:COG0457  97 EDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADA 146
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 258-370 1.23e-08

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 54.69  E-value: 1.23e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782  258 KDRGTMYLQKGNLKLAYNKYKRA----EEVLEYEKStDPEKMaeretilngayLNLSLVCSKQNEQLECIKWCDKVLETK 333
Cdd:NF040959  34 RDRAKMYRNKGISHAKKGRYDKAvrylEQVARIDPD-DVEAL-----------YRLGVAYLKTGQYDRAIKVLEKVLSLA 101

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 17561782  334 PGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPEN 370
Cdd:NF040959 102 PDHVKAAYRKGVALLKIKDYEKAVEDLEEALEEKPDN 138
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 261-375 1.31e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.09  E-value: 1.31e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782 261 GTMYLQKGNLKLAYNKYKRAEEVleyekstDPEKMAeretilngAYLNLSLVCSKQNEQLECIKWCDKVLETKPGNVKAL 340
Cdd:COG4235  24 GRAYLRLGRYDEALAAYEKALRL-------DPDNAD--------ALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL 88

                        90       100       110
                ....*....|....*....|....*....|....*
gi 17561782 341 YRKATALLTMNEVRDAMKLFEKIVEVEPENKAAAQ 375
Cdd:COG4235  89 YLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
305-373 3.31e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.24  E-value: 3.31e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17561782 305 AYLNLSLVCSKQNEQLECIKWCDKVLETKPGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPENKAA 373
Cdd:COG0457  10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA 78
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 247-370 5.27e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.73  E-value: 5.27e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782 247 AEEKLDAA-KQAKDRGTMYLQKGNLKLAYNKYKRAEEVLEYEKSTDPEkmaEREtilngAYLNLSLVCSKQNEQLECIKW 325
Cdd:COG4783  23 AEALLEKAlELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD---EPE-----ARLNLGLALLKAGDYDEALAL 94

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 17561782 326 CDKVLETKPGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPEN 370
Cdd:COG4783  95 LEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
246-370 7.03e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 53.00  E-value: 7.03e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782 246 TAEEKLDAAKQAKDRGTMYLQKGNLKLAYNKYKRAEEVleyekstDPEkMAEretilngAYLNLSLVCSKQNEQLECIKW 325
Cdd:COG4785  65 RALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALEL-------DPD-LAE-------AYNNRGLAYLLLGDYDAALED 129

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 17561782 326 CDKVLETKPGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPEN 370
Cdd:COG4785 130 FDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPND 174
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 253-380 1.25e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.81  E-value: 1.25e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782 253 AAKQAKDRGTMYLQKGNLKLAYNKYKRAEEVLE-------------------YEKSTDPEK---MAERETILNG----AY 306
Cdd:COG2956  68 LLERDPDRAEALLELAQDYLKAGLLDRAEELLEklleldpddaealrllaeiYEQEGDWEKaieVLERLLKLGPenahAY 147

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17561782 307 LNLSLVCSKQNEQLECIKWCDKVLETKPGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPENKAAAQQIIVC 380
Cdd:COG2956 148 CELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 231-373 1.57e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 53.55  E-value: 1.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782   231 IFLKEFEKVPAtwEMTAEEKLDAAKQAK---DRGTMYLQKGNLKLAYNKYKRAeevLEYEKSTDPEKMAEretilngAYL 307
Cdd:TIGR02917 101 LLQGKFQQVLD--ELPGKTLLDDEGAAEllaLRGLAYLGLGQLELAQKSYEQA---LAIDPRSLYAKLGL-------AQL 168

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17561782   308 NLSlvcskQNEQLECIKWCDKVLETKPGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPENKAA 373
Cdd:TIGR02917 169 ALA-----ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAV 229
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 264-377 2.79e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.42  E-value: 2.79e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782 264 YLQKGNLKLAYNKYKRAEEVLEYEKSTDPEKMAeretilngAYLNLSLVCSKQNEQLECIKWCDKVLETKPGNVKALYRK 343
Cdd:COG4783   7 LYALAQALLLAGDYDEAEALLEKALELDPDNPE--------AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL 78

                        90       100       110
                ....*....|....*....|....*....|....
gi 17561782 344 ATALLTMNEVRDAMKLFEKIVEVEPENKAAAQQI 377
Cdd:COG4783  79 GLALLKAGDYDEALALLEKALKLDPEHPEAYLRL 112
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
260-376 3.57e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.16  E-value: 3.57e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782 260 RGTMYLQKGNLKLAYNKYKRAEEVleyekstDPEKMAeretilngAYLNLSLVCSKQNEQLECIKWCDKVLETKPGNVKA 339
Cdd:COG0457  82 LGLALQALGRYEEALEDYDKALEL-------DPDDAE--------ALYNLGLALLELGRYDEAIEAYERALELDPDDADA 146

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 17561782 340 LYRKATALLTMNEVRDAMKLFEKIVEVEPENKAAAQQ 376
Cdd:COG0457 147 LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAAL 183
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 259-381 4.43e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 52.30  E-value: 4.43e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782 259 DRGTMYLQKGNLKLAYNKYKRAEEVleyekstDPEkMAEretilngAYLNLSLVCSKQNEQLECIKWCDKVLETKPGNVK 338
Cdd:COG3914 117 NLGNLLLALGRLEEALAALRRALAL-------NPD-FAE-------AYLNLGEALRRLGRLEEAIAALRRALELDPDNAE 181

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 17561782 339 ALYRKATALLTMNEVRDAMKLFEKIVEVEPENKAAAQQIIVCR 381
Cdd:COG3914 182 ALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFAL 224
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 247-368 7.03e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.80  E-value: 7.03e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782 247 AEEKLDAAKQAKDRGTMYLQKGNLKLAYNKYKRAEEVleyekstDPEKMAeretilngAYLNLSLVCSKQNEQLECIKWC 326
Cdd:COG5010  47 RDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL-------DPNNPE--------LYYNLALLYSRSGDKDEAKEYY 111

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 17561782 327 DKVLETKPGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEP 368
Cdd:COG5010 112 EKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
264-369 1.70e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.93  E-value: 1.70e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782 264 YLQKGNLKLAYNKYKRAEEVleyekstDPEKMAeretilngAYLNLSLVCSKQNEQLECIKWcDKVLETKPGNVKALYRK 343
Cdd:COG3063   2 YLKLGDLEEAEEYYEKALEL-------DPDNAD--------ALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNL 65

                        90       100
                ....*....|....*....|....*.
gi 17561782 344 ATALLTMNEVRDAMKLFEKIVEVEPE 369
Cdd:COG3063  66 AELLLELGDYDEALAYLERALELDPS 91
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 243-370 3.21e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.57  E-value: 3.21e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782 243 WEMTAEEKLDAAKQAKDRGTMYLQKGNLKLAYNKYKRAEEVLEYEKSTDPEKMAeretilngAYLNLSLVCSKQNEQLEC 322
Cdd:COG2956 126 WEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCAR--------ALLLLAELYLEQGDYEEA 197

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
gi 17561782 323 IKWCDKVLETKPGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPEN 370
Cdd:COG2956 198 IAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD 245
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 305-373 4.83e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.77  E-value: 4.83e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17561782 305 AYLNLSLVCSKQNEQLECIKWCDKVLETKPGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPENKAA 373
Cdd:COG4235  19 GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 251-370 6.44e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.42  E-value: 6.44e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782 251 LDAAKQAKDRGTMYLQKGNLKLAYNKYKRAEEVLEYEKSTDPEKmaeretilNGAYLNLSLVCSKQNEQLECIKWCDKVL 330
Cdd:COG2956  32 EEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDR--------AEALLELAQDYLKAGLLDRAEELLEKLL 103

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 17561782 331 ETKPGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPEN 370
Cdd:COG2956 104 ELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN 143
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 260-378 2.08e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.88  E-value: 2.08e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782 260 RGTMYLQKGNLKLAYNKYKRAEEVleyekstDPEKMAeretilngAYLNLSLVCSKQNEQLECIKWCDKVLETKPGNVKA 339
Cdd:COG2956  14 KGLNYLLNGQPDKAIDLLEEALEL-------DPETVE--------AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEA 78

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 17561782 340 LYRKATALLTMNEVRDAMKLFEKIVEVEPENKAAAQQII 378
Cdd:COG2956  79 LLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLA 117
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 305-377 2.73e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.64  E-value: 2.73e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17561782 305 AYLNLSLVCSKQNEQLECIKWCDKVLETKPGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPENKAAAQQI 377
Cdd:COG4783   6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL 78
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 275-375 2.75e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.06  E-value: 2.75e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782 275 NKYKRAEEVLE--YEKSTDPEKMAEretilngAYLNLSLVCSKQNEQLECIKWCDKVLETKPGNVK---ALYRKATALLT 349
Cdd:COG1729   7 GDYDEAIAAFKafLKRYPNSPLAPD-------ALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLE 79

                        90       100
                ....*....|....*....|....*.
gi 17561782 350 MNEVRDAMKLFEKIVEVEPENKAAAQ 375
Cdd:COG1729  80 LGDYDKARATLEELIKKYPDSEAAKE 105
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 251-375 4.10e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.71  E-value: 4.10e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782 251 LDAAKQAKDRGTMYLQKGNLKLAYNKYKRAEEVLEYEKSTDPEKMAERETILNGAYLNLSLVCSKQNEQLEC-IKWCDKV 329
Cdd:COG5010   1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEEsLALLEQA 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 17561782 330 LETKPGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPENKAAAQ 375
Cdd:COG5010  81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS 126
TPR_19 pfam14559
Tetratricopeptide repeat;
327-375 4.91e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 38.33  E-value: 4.91e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 17561782   327 DKVLETKPGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPENKAAAQ 375
Cdd:pfam14559  12 EQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 323-373 7.19e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.60  E-value: 7.19e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 17561782 323 IKWCDKVLETKPGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPENKAA 373
Cdd:COG4235   3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADA 53
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 321-370 1.87e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 39.92  E-value: 1.87e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 17561782 321 ECIKWCDKVLETKPGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPEN 370
Cdd:cd24142  18 LALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 252-374 1.90e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 1.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782   252 DAAKQAKDRGTMYLQKGNLKLAYNKYKRAEEVLEYEKSTDPEkMAERETILNGAYLnlslvcsKQNEQLECIKWCDKVLE 331
Cdd:TIGR02917 388 KATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYL-------RSGQFDKALAAAKKLEK 459

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 17561782   332 TKPGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPENKAAA 374
Cdd:TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAA 502
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 231-421 4.97e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 39.20  E-value: 4.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782   231 IFLKEFEKVPATWEMTA----EEKLDAAKQAKDRGTMYLQKGNLKLAYNKYKRAEEvleyekstDPEKMAERETILNGAY 306
Cdd:TIGR00990 297 LGLKSPESKADESYEEAarafEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALA--------DLSKSIELDPRVTQSY 368

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561782   307 LNLSLVCSKQNEQLECIKWCDKVLETKPGNVKALYRKATALLTMNEVRDAMKLFEKIVEVEPENKAAAQQIIV------- 379
Cdd:TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVtqykegs 448

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 17561782   380 ---CRNTIReqneRDKKRFK------NLFAKISTEEDKPTNTVEDEDEIVA 421
Cdd:TIGR00990 449 iasSMATFR----RCKKNFPeapdvyNYYGELLLDQNKFDEAIEKFDTAIE 495
TPR_1 pfam00515
Tetratricopeptide repeat;
337-370 8.28e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 33.93  E-value: 8.28e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 17561782   337 VKALYRKATALLTMNEVRDAMKLFEKIVEVEPEN 370
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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