heterochromatin protein 1-binding protein 3 isoform 7 [Mus musculus]
List of domain hits
Name | Accession | Description | Interval | E-value | |||
H15 | cd00073 | linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, ... |
119-203 | 6.09e-22 | |||
linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber : Pssm-ID: 238028 [Multi-domain] Cd Length: 88 Bit Score: 89.99 E-value: 6.09e-22
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
303-370 | 2.41e-19 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. : Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 82.19 E-value: 2.41e-19
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
227-287 | 1.30e-10 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. : Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 57.15 E-value: 1.30e-10
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PRK13808 super family | cl31642 | adenylate kinase; Provisional |
416-515 | 4.25e-04 | |||
adenylate kinase; Provisional The actual alignment was detected with superfamily member PRK13808: Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 42.57 E-value: 4.25e-04
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LGT super family | cl00478 | Prolipoprotein diacylglyceryl transferase; |
24-122 | 1.75e-03 | |||
Prolipoprotein diacylglyceryl transferase; The actual alignment was detected with superfamily member PRK13108: Pssm-ID: 469786 [Multi-domain] Cd Length: 460 Bit Score: 40.73 E-value: 1.75e-03
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Name | Accession | Description | Interval | E-value | |||
H15 | cd00073 | linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, ... |
119-203 | 6.09e-22 | |||
linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber Pssm-ID: 238028 [Multi-domain] Cd Length: 88 Bit Score: 89.99 E-value: 6.09e-22
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
122-192 | 1.25e-19 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 82.96 E-value: 1.25e-19
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
303-370 | 2.41e-19 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 82.19 E-value: 2.41e-19
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H15 | smart00526 | Domain in histone families 1 and 5; |
119-185 | 3.36e-14 | |||
Domain in histone families 1 and 5; Pssm-ID: 197772 [Multi-domain] Cd Length: 66 Bit Score: 67.22 E-value: 3.36e-14
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
227-287 | 1.30e-10 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 57.15 E-value: 1.30e-10
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H15 | smart00526 | Domain in histone families 1 and 5; |
214-280 | 5.49e-10 | |||
Domain in histone families 1 and 5; Pssm-ID: 197772 [Multi-domain] Cd Length: 66 Bit Score: 55.28 E-value: 5.49e-10
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H15 | smart00526 | Domain in histone families 1 and 5; |
307-363 | 1.12e-09 | |||
Domain in histone families 1 and 5; Pssm-ID: 197772 [Multi-domain] Cd Length: 66 Bit Score: 54.51 E-value: 1.12e-09
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H15 | cd00073 | linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, ... |
307-373 | 2.97e-06 | |||
linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber Pssm-ID: 238028 [Multi-domain] Cd Length: 88 Bit Score: 45.30 E-value: 2.97e-06
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PRK13808 | PRK13808 | adenylate kinase; Provisional |
416-515 | 4.25e-04 | |||
adenylate kinase; Provisional Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 42.57 E-value: 4.25e-04
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PRK13108 | PRK13108 | prolipoprotein diacylglyceryl transferase; Reviewed |
24-122 | 1.75e-03 | |||
prolipoprotein diacylglyceryl transferase; Reviewed Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 40.73 E-value: 1.75e-03
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Name | Accession | Description | Interval | E-value | |||
H15 | cd00073 | linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, ... |
119-203 | 6.09e-22 | |||
linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber Pssm-ID: 238028 [Multi-domain] Cd Length: 88 Bit Score: 89.99 E-value: 6.09e-22
|
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
122-192 | 1.25e-19 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 82.96 E-value: 1.25e-19
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
303-370 | 2.41e-19 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 82.19 E-value: 2.41e-19
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H15 | smart00526 | Domain in histone families 1 and 5; |
119-185 | 3.36e-14 | |||
Domain in histone families 1 and 5; Pssm-ID: 197772 [Multi-domain] Cd Length: 66 Bit Score: 67.22 E-value: 3.36e-14
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
227-287 | 1.30e-10 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 57.15 E-value: 1.30e-10
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H15 | smart00526 | Domain in histone families 1 and 5; |
214-280 | 5.49e-10 | |||
Domain in histone families 1 and 5; Pssm-ID: 197772 [Multi-domain] Cd Length: 66 Bit Score: 55.28 E-value: 5.49e-10
|
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H15 | smart00526 | Domain in histone families 1 and 5; |
307-363 | 1.12e-09 | |||
Domain in histone families 1 and 5; Pssm-ID: 197772 [Multi-domain] Cd Length: 66 Bit Score: 54.51 E-value: 1.12e-09
|
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H15 | cd00073 | linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, ... |
307-373 | 2.97e-06 | |||
linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber Pssm-ID: 238028 [Multi-domain] Cd Length: 88 Bit Score: 45.30 E-value: 2.97e-06
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PRK13808 | PRK13808 | adenylate kinase; Provisional |
416-515 | 4.25e-04 | |||
adenylate kinase; Provisional Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 42.57 E-value: 4.25e-04
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PRK13808 | PRK13808 | adenylate kinase; Provisional |
387-515 | 4.52e-04 | |||
adenylate kinase; Provisional Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 42.57 E-value: 4.52e-04
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PRK13108 | PRK13108 | prolipoprotein diacylglyceryl transferase; Reviewed |
24-122 | 1.75e-03 | |||
prolipoprotein diacylglyceryl transferase; Reviewed Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 40.73 E-value: 1.75e-03
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PRK13808 | PRK13808 | adenylate kinase; Provisional |
432-515 | 6.38e-03 | |||
adenylate kinase; Provisional Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 38.72 E-value: 6.38e-03
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valS | PRK14900 | valyl-tRNA synthetase; Provisional |
417-509 | 7.38e-03 | |||
valyl-tRNA synthetase; Provisional Pssm-ID: 237855 [Multi-domain] Cd Length: 1052 Bit Score: 39.20 E-value: 7.38e-03
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Blast search parameters | ||||
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