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Conserved domains on  [gi|1861097243|ref|NP_001371572|]
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V-set and transmembrane domain-containing protein 2B isoform 5 [Homo sapiens]

Protein Classification

immunoglobulin domain-containing protein( domain architecture ID 12208729)

immunoglobulin (Ig) domain-containing protein adopts a fold comprised of a sandwich of two beta sheets and may function in cell adhesion and/or pattern recognition

CATH:  2.60.40.10
PubMed:  7932691|8176743|23842991|10436082|3289571|9541533

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
IG_like smart00410
Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
 8-51 3.55e-04

Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.


:

Pssm-ID: 214653 [Multi-domain]  Cd Length: 85  Bit Score: 37.87  E-value: 3.55e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1861097243    8 LGSETVRVQGNDISHRLRLSAVRLQDEGVYECRVSDYSDDDTQE 51
Cdd:smart00410  37 AESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSG 80
 
Name Accession Description Interval E-value
IG_like smart00410
Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
 8-51 3.55e-04

Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.


Pssm-ID: 214653 [Multi-domain]  Cd Length: 85  Bit Score: 37.87  E-value: 3.55e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1861097243    8 LGSETVRVQGNDISHRLRLSAVRLQDEGVYECRVSDYSDDDTQE 51
Cdd:smart00410  37 AESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSG 80
 
Name Accession Description Interval E-value
IG_like smart00410
Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
 8-51 3.55e-04

Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.


Pssm-ID: 214653 [Multi-domain]  Cd Length: 85  Bit Score: 37.87  E-value: 3.55e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1861097243    8 LGSETVRVQGNDISHRLRLSAVRLQDEGVYECRVSDYSDDDTQE 51
Cdd:smart00410  37 AESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSG 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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