|
Name |
Accession |
Description |
Interval |
E-value |
| TMTC_DUF1736 |
pfam08409 |
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ... |
185-258 |
8.02e-39 |
|
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.
Pssm-ID: 462468 Cd Length: 75 Bit Score: 138.43 E-value: 8.02e-39
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1488192476 185 QSQLPVFTRFDNPAAVSPTP-TRQLTFNYLLPVNAWLLLNPSELCCDWTMGTIPLIESLLDIRNLATFTFFCFLG 258
Cdd:pfam08409 1 GGQLPVFSASDNPAAFSPSLlTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
366-595 |
1.29e-36 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 138.22 E-value: 1.29e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 366 LKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkK 445
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADY--------------E 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 446 YAARIAPNHLNVYINLANlIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNAD 525
Cdd:COG0457 67 QALELDPDDAEALNNLGL-ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 526 LWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKLRPEARKRLLSYINEEPLDA 595
Cdd:COG0457 146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
403-659 |
2.65e-36 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 137.45 E-value: 2.65e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 403 QPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAARIAPNHLNVYINLANlIRANESRLEEADQLYRQA 482
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDY--------------EKALELDPDDAEALYNLGL-AYLRLGRYEEALADYEQA 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 483 ISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALF 562
Cdd:COG0457 69 LELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 563 NSAIVMQESGEVKLRPEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQT 642
Cdd:COG0457 149 NLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALA 228
|
250
....*....|....*..
gi 1488192476 643 AKELKALPILEELLRYY 659
Cdd:COG0457 229 LLLALRLAALALYQYRA 245
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
483-673 |
9.78e-34 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 130.13 E-value: 9.78e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 483 ISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALF 562
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 563 NSAIVMQESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQT 642
Cdd:COG0457 81 NLGLALQALGRYE---EALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
170 180 190
....*....|....*....|....*....|.
gi 1488192476 643 AKELKALPILEELLRYYPDHIKGLILKGDIL 673
Cdd:COG0457 158 GRYEEALELLEKLEAAALAALLAAALGEAAL 188
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
361-625 |
3.63e-33 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 129.46 E-value: 3.63e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 361 LFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqi 440
Cdd:COG2956 30 LLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL---------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 441 ipgkKYAARIAPNHLNVYINLANlIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELD 520
Cdd:COG2956 100 ----EKLLELDPDDAEALRLLAE-IYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 521 RNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPLDANgYFN 600
Cdd:COG2956 175 PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPE---EALELLRKALELDPSDDL-LLA 250
|
250 260
....*....|....*....|....*
gi 1488192476 601 LGMLAMDDKKDNEAEIWMKKAIKLQ 625
Cdd:COG2956 251 LADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
376-657 |
6.33e-33 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 128.69 E-value: 6.33e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 376 WNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAARIAPNHL 455
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIH--------------QKLLERDPDRA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 456 NVYINLANL-IRANesRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVH 534
Cdd:COG2956 77 EALLELAQDyLKAG--LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELY 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 535 IELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEA 614
Cdd:COG2956 155 LEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYE---EAIAALERALEQDPDYLPALPRLAELYEKLGDPEEA 231
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1488192476 615 EIWMKKAIKLQADfRSALFNLALLYSQTAKELKALPILEELLR 657
Cdd:COG2956 232 LELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
471-726 |
6.72e-32 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 125.61 E-value: 6.72e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 471 RLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRA 550
Cdd:COG2956 23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 551 LELNPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRS 630
Cdd:COG2956 103 LELDPDDAEALRLLAEIYEQEGDWE---KAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCAR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 631 ALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQkKDILGAKKCFERILEMDPSNVQgKHNLCVVYFE 710
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL-GDPEEALELLRKALELDPSDDL-LLALADLLER 257
|
250
....*....|....*.
gi 1488192476 711 EKDLLKAERCLLETLA 726
Cdd:COG2956 258 KEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
493-729 |
1.28e-31 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 124.84 E-value: 1.28e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 493 YISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESG 572
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 573 EVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPIL 652
Cdd:COG2956 91 LLD---RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1488192476 653 EELLRYYPDHIKGLILKGDILMnQKKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAP 729
Cdd:COG2956 168 EKALKLDPDCARALLLLAELYL-EQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
372-600 |
6.23e-26 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 113.93 E-value: 6.23e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 372 NAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAARIA 451
Cdd:COG3914 43 LALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALY--------------RRALALN 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 452 PNHLNVYINLANLIRANEsRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLA 531
Cdd:COG3914 109 PDNAEALFNLGNLLLALG-RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1488192476 532 IVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKLRPEARKRLLSYINEEPLDANGYFN 600
Cdd:COG3914 188 NALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALL 256
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
362-729 |
7.53e-25 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 111.33 E-value: 7.53e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 362 FMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqii 441
Cdd:TIGR02917 488 FEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWL----------- 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 442 pgkKYAARIAPNHLNVYINLANLIRANeSRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDR 521
Cdd:TIGR02917 557 ---EKAAELNPQEIEPALALAQYYLGK-GQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP 632
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 522 NNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGevklRPEARKRLLSYI-NEEPLDANGYFN 600
Cdd:TIGR02917 633 DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK----RTESAKKIAKSLqKQHPKAALGFEL 708
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 601 LGMLAMDDKKDNEAEIWMKKAIKLQADfRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQKKDI 680
Cdd:TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD 787
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1488192476 681 LGAKKcFERILEMDPSNVQGKHNLCVVYFEEKDlLKAERCLLETLALAP 729
Cdd:TIGR02917 788 KAIKH-YQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAP 834
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
365-735 |
7.03e-24 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 108.25 E-value: 7.03e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 365 ALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAE----------------- 427
Cdd:TIGR02917 185 VLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEkhadallkkapnsplah 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 428 -----------------ESYMMAKSLMPQIIPGKKYAARI---------APNHLNVY----------INLANLIRANESR 471
Cdd:TIGR02917 265 ylkalvdfqkknyedarETLQDALKSAPEYLPALLLAGASeyqlgnleqAYQYLNQIlkyapnshqaRRLLASIQLRLGR 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 472 LEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRAL 551
Cdd:TIGR02917 345 VDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAA 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 552 ELNPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSA 631
Cdd:TIGR02917 425 QLDPELGRADLLLILSYLRSGQFD---KALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 632 LFNLALLYSQTAKELKALPILEELLRYYPDHIKgLILKGDILMNQKKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEE 711
Cdd:TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKNLR-AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGK 580
|
410 420
....*....|....*....|....*
gi 1488192476 712 KDLLKAERCLLETLALAP-HEEYIQ 735
Cdd:TIGR02917 581 GQLKKALAILNEAADAAPdSPEAWL 605
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
455-592 |
1.08e-22 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 94.49 E-value: 1.08e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 455 LNVYINLANLIRANEsRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVH 534
Cdd:COG4783 4 AEALYALAQALLLAG-DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1488192476 535 IELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEvklRPEARKRLLSYINEEP 592
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGR---PDEAIAALEKALELDP 137
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
406-557 |
1.93e-22 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 94.10 E-value: 1.93e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 406 DIGAHMNVGRTYKNLNRTKEAEEsymmaksLMPQIIpgkkyaaRIAPNHLNVYINLANlIRANESRLEEADQLYRQAISM 485
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEA-------LLEKAL-------ELDPDNPEAFALLGE-ILLQLGDLDEAIVLLHEALEL 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1488192476 486 RPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKH 557
Cdd:COG4783 68 DPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
365-719 |
6.16e-22 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 101.70 E-value: 6.16e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 365 ALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgk 444
Cdd:TIGR02917 355 ALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADL-------------- 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 445 KYAARIAPNHLNVYINLA-NLIRANESrlEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNN 523
Cdd:TIGR02917 421 ETAAQLDPELGRADLLLIlSYLRSGQF--DKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDF 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 524 ADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGevklRPEARKRLLSY-INEEPLDANGYFNLG 602
Cdd:TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG----NEEEAVAWLEKaAELNPQEIEPALALA 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 603 MLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQkKDILG 682
Cdd:TIGR02917 575 QYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM-KNYAK 653
|
330 340 350
....*....|....*....|....*....|....*..
gi 1488192476 683 AKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAER 719
Cdd:TIGR02917 654 AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK 690
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
474-606 |
3.21e-21 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 90.07 E-value: 3.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 474 EADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALEL 553
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1488192476 554 NPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAM 606
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYA---EAIAAWQKLLALLPADAPARLLEASIAE 130
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
447-556 |
2.03e-20 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 87.75 E-value: 2.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 447 AARIAPNHLNVYINLANlIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADL 526
Cdd:COG4235 9 ALAANPNDAEGWLLLGR-AYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87
|
90 100 110
....*....|....*....|....*....|
gi 1488192476 527 WYNLAIVHIELKEPNEALKNFNRALELNPK 556
Cdd:COG4235 88 LYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
588-744 |
3.27e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 90.84 E-value: 3.27e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 588 INEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLI 667
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1488192476 668 LKGDILMNQKkDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHEEYIQRHLNIVRDK 744
Cdd:COG0457 81 NLGLALQALG-RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEK 156
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
332-584 |
5.52e-20 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 95.06 E-value: 5.52e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 332 LSWICLSMVILTHSLKTFHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHM 411
Cdd:COG3914 71 AAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 412 NVGRTYKNLNRTKEAEESYMMakslmpqiipgkkyAARIAPNHLNVYINLANLIRANeSRLEEADQLYRQAISMRPDFKQ 491
Cdd:COG3914 151 NLGEALRRLGRLEEAIAALRR--------------ALELDPDNAEALNNLGNALQDL-GRLEEAIAAYRRALELDPDNAD 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 492 AYISRGELLLKMNK--PLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSaivmq 569
Cdd:COG3914 216 AHSNLLFALRQACDweVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALARAWAQLVAAAAAPELPPPPN----- 290
|
250
....*....|....*
gi 1488192476 570 esgevklRPEARKRL 584
Cdd:COG3914 291 -------PRDPDRKL 298
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
447-735 |
1.33e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 93.90 E-value: 1.33e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 447 AARIAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMnkplkAKEAYLKALELDRNNADL 526
Cdd:COG3914 6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLAL-----AAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 527 WYNLAIVHIELKEPNEALKNFNRALELNPKHKLAlfnsaivmqesgevklrpearkrllsyineepldangYFNLGMLAM 606
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALALNPDNAEA-------------------------------------LFNLGNLLL 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 607 DDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQkKDILGAKKC 686
Cdd:COG3914 124 ALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDL-GRLEEAIAA 202
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1488192476 687 FERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHEEYIQ 735
Cdd:COG3914 203 YRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELS 251
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
369-730 |
2.19e-19 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 93.61 E-value: 2.19e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 369 NKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEE-------------------- 428
Cdd:TIGR02917 121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARAlidevltadpgnvdalllkg 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 429 SYMMAKSLMPQIIPGKKYAARIAPNHLNVYINLAN-LIRANEsrLEEADQlyrQAISMRPDFKQ----AYIsRGELLLKM 503
Cdd:TIGR02917 201 DLLLSLGNIELALAAYRKAIALRPNNIAVLLALATiLIEAGE--FEEAEK---HADALLKKAPNsplaHYL-KALVDFQK 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 504 NKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLAL------------FNSAIV---- 567
Cdd:TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARrllasiqlrlgrVDEAIAtlsp 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 568 -----------MQESGEVKLR---PEARKRLLSYINE-EPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSAL 632
Cdd:TIGR02917 355 algldpddpaaLSLLGEAYLAlgdFEKAAEYLAKATElDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRAD 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 633 FNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNqKKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEK 712
Cdd:TIGR02917 435 LLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLG-KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEG 513
|
410
....*....|....*...
gi 1488192476 713 DLLKAERCLLETLALAPH 730
Cdd:TIGR02917 514 NPDDAIQRFEKVLTIDPK 531
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
426-555 |
4.59e-19 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 85.01 E-value: 4.59e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 426 AEESYMMAKSLMPQIIPGKKYAARIAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNK 505
Cdd:COG5010 24 VEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGD 103
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1488192476 506 PLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNP 555
Cdd:COG5010 104 KDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
428-603 |
5.47e-19 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 86.51 E-value: 5.47e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 428 ESYMMAKSLMPQIIP--GKKYAARIAPNHLNVYINLANLiRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNK 505
Cdd:COG4785 44 LALALAAAALAAAALaaERIDRALALPDLAQLYYERGVA-YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGD 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 506 PLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGevklRPEARKRLL 585
Cdd:COG4785 123 YDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLD----PEKALALLL 198
|
170 180
....*....|....*....|....
gi 1488192476 586 SYI------NEEPLDANGYFNLGM 603
Cdd:COG4785 199 EDWatayllQGDTEEARELFKLAL 222
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
509-738 |
9.46e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 88.13 E-value: 9.46e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 509 AKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEvklRPEARKRLLSYI 588
Cdd:COG3914 2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGE---AAAAAAALLLLA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 589 NEEPLDANGYFNLGmlamddkKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLIL 668
Cdd:COG3914 79 ALLELAALLLQALG-------RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLN 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 669 KGDILMNQKkDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHEEYIQRHL 738
Cdd:COG3914 152 LGEALRRLG-RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
527-730 |
1.38e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 83.63 E-value: 1.38e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 527 WYNLAIVHIELKEPNEALKNFNRALELNPKHKLAlfnsaivmqesgevklrpearkrllsyineepldangYFNLGMLAM 606
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEA-------------------------------------HLALGNLYR 53
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 607 DDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMnQKKDILGAKKC 686
Cdd:COG2956 54 RRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYE-QEGDWEKAIEV 132
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1488192476 687 FERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPH 730
Cdd:COG2956 133 LERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPD 176
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
471-556 |
1.40e-17 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 78.67 E-value: 1.40e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 471 RLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAkEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRA 550
Cdd:COG3063 7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85
|
....*.
gi 1488192476 551 LELNPK 556
Cdd:COG3063 86 LELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
458-593 |
3.64e-17 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 79.62 E-value: 3.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 458 YINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIEL 537
Cdd:COG5010 22 TLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRS 101
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1488192476 538 KEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPL 593
Cdd:COG5010 102 GDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD---EAKAALQRALGTSPL 154
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
424-738 |
9.03e-17 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 85.14 E-value: 9.03e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 424 KEAEESYMMAKSLMPQIIPGK-----KYAARIAPNHLNVYINLANL------IRANESRLEEADQLYRQAISMRPDFKQA 492
Cdd:TIGR02917 20 QSPEELIEAAKSYLQKNKYKAaiiqlKNALQKDPNDAEARFLLGKIylalgdYAAAEKELRKALSLGYPKNQVLPLLARA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 493 YISRGE----LLLKMNKPLKAKEAYLKALELdrnnadlwynLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVM 568
Cdd:TIGR02917 100 YLLQGKfqqvLDELPGKTLLDDEGAAELLAL----------RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 569 QESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKA 648
Cdd:TIGR02917 170 LAENRFD---EARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 649 LPILEELLRYYPDHIKGLILKGdILMNQKKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALA 728
Cdd:TIGR02917 247 EKHADALLKKAPNSPLAHYLKA-LVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA 325
|
330
....*....|
gi 1488192476 729 PHEEYIQRHL 738
Cdd:TIGR02917 326 PNSHQARRLL 335
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
524-697 |
9.47e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 77.54 E-value: 9.47e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 524 ADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLAlfnsaivmqesgevklrpearkrllsyineepldangYFNLGM 603
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA-------------------------------------FALLGE 46
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 604 LAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQkKDILGA 683
Cdd:COG4783 47 ILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL-GRPDEA 125
|
170
....*....|....
gi 1488192476 684 KKCFERILEMDPSN 697
Cdd:COG4783 126 IAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
391-525 |
1.43e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 76.97 E-value: 1.43e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 391 RALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAARIAPNHLNVYINLAN-LIRANE 469
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAY--------------EKALRLDPDNADALLDLAEaLLAAGD 66
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1488192476 470 SrlEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNAD 525
Cdd:COG4235 67 T--EEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
499-592 |
5.03e-16 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 74.05 E-value: 5.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 499 LLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKnFNRALELNPKHKLALFNSAIVMQESGEVKlrp 578
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD--- 76
|
90
....*....|....
gi 1488192476 579 EARKRLLSYINEEP 592
Cdd:COG3063 77 EALAYLERALELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
579-697 |
5.33e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 75.04 E-value: 5.33e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 579 EARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRY 658
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*....
gi 1488192476 659 YPDHIKGLILKGDILMnQKKDILGAKKCFERILEMDPSN 697
Cdd:COG4235 81 DPDNPEALYLLGLAAF-QQGDYAEAIAAWQKLLALLPAD 118
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
508-672 |
6.60e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 75.04 E-value: 6.60e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 508 KAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKhklalfnsaivmqesgevklrpearkrllsy 587
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD------------------------------- 49
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 588 ineeplDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLI 667
Cdd:COG4235 50 ------NADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
....*
gi 1488192476 668 LKGDI 672
Cdd:COG4235 124 LEASI 128
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
354-489 |
8.69e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 74.84 E-value: 8.69e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 354 DWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmma 433
Cdd:COG4783 19 DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALL--- 95
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1488192476 434 kslmpqiipgkKYAARIAPNHLNVYINLANLIRANEsRLEEADQLYRQAISMRPDF 489
Cdd:COG4783 96 -----------EKALKLDPEHPEAYLRLARAYRALG-RPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
594-731 |
1.48e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 74.07 E-value: 1.48e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 594 DANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDIL 673
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1488192476 674 MNQkKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHE 731
Cdd:COG4783 83 LKA-GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
370-726 |
2.30e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 80.51 E-value: 2.30e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 370 KNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAAR 449
Cdd:TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF--------------EKVLT 527
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 450 IAPNHLNVYINLANL--IRANESR----LEEADQLYRQAISMRPDFKQAYISRGEL------------------------ 499
Cdd:TIGR02917 528 IDPKNLRAILALAGLylRTGNEEEavawLEKAAELNPQEIEPALALAQYYLGKGQLkkalailneaadaapdspeawlml 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 500 --LLKMNKPL-KAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLAL------------FNS 564
Cdd:TIGR02917 608 grAQLAAGDLnKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQiglaqlllaakrTES 687
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 565 AI----VMQES-----------GEVKLR-------------------------------------PEARKRLLSYINEEP 592
Cdd:TIGR02917 688 AKkiakSLQKQhpkaalgfeleGDLYLRqkdypaaiqayrkalkrapssqnaiklhrallasgntAEAVKTLEAWLKTHP 767
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 593 LDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTaKELKALPILEELLRYYPDHIKGLILKGDI 672
Cdd:TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKLAPNIPAILDTLGWL 846
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1488192476 673 LMnQKKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAeRCLLETLA 726
Cdd:TIGR02917 847 LV-EKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA-RKELDKLL 898
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
416-693 |
1.24e-14 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 77.72 E-value: 1.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 416 TYKNLNRTKEAEESYMMA------KSLMPQIIPGKKYAARIAPN---------HLNVYINLANLIRANESRLEEADQLYR 480
Cdd:TIGR00990 276 RPAGLEDSNELDEETGNGqlqlglKSPESKADESYEEAARAFEKaldlgklgeKEAIALNLRGTFKCLKGKHLEALADLS 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 481 QAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLA 560
Cdd:TIGR00990 356 KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 561 LFNSAIVMQESGEVKLRPEARKRLLSYINEEPlDANGYFnlGMLAMDDKKDNEAEIWMKKAIKLQADFR------SALFN 634
Cdd:TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNFPEAP-DVYNYY--GELLLDQNKFDEAIEKFDTAIELEKETKpmymnvLPLIN 512
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 635 LALLYSQTAKEL-KALPILEELLRYYPDHIKGLILKGDILMnQKKDILGAKKCFERILEM 693
Cdd:TIGR00990 513 KALALFQWKQDFiEAENLCEKALIIDPECDIAVATMAQLLL-QQGDVDEALKLFERAAEL 571
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
350-566 |
1.61e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 70.71 E-value: 1.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 350 HRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFL------QATHVQPDDIGAHMNVGRTYKNLNRT 423
Cdd:COG4785 10 LALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAAlaaeriDRALALPDLAQLYYERGVAYDSLGDY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 424 KEAEESYMMAKSLMPqiipgkKYAAriapnhlnVYINLAnLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKM 503
Cdd:COG4785 90 DLAIADFDQALELDP------DLAE--------AYNNRG-LAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1488192476 504 NKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKePNEALKNFNRA------LELNPKHKLALFNSAI 566
Cdd:COG4785 155 GRYELAIADLEKALELDPNDPERALWLYLAERKLD-PEKALALLLEDwataylLQGDTEEARELFKLAL 222
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
354-520 |
1.94e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 71.30 E-value: 1.94e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 354 DWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmma 433
Cdd:COG2956 125 DWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAAL--- 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 434 kslmpqiipgkKYAARIAPNHLNVYINLANLIRAnESRLEEADQLYRQAISMRPDfKQAYISRGELLLKMNKPLKAKEAY 513
Cdd:COG2956 202 -----------ERALEQDPDYLPALPRLAELYEK-LGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALL 268
|
....*..
gi 1488192476 514 LKALELD 520
Cdd:COG2956 269 ERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
595-738 |
3.82e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 70.53 E-value: 3.82e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 595 ANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILM 674
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1488192476 675 NQKK-DilGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHEEYIQRHL 738
Cdd:COG2956 88 KAGLlD--RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL 150
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
365-499 |
5.54e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 66.57 E-value: 5.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 365 ALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgk 444
Cdd:COG4235 9 ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELL-------------- 74
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1488192476 445 KYAARIAPNHLNVYINLAnLIRANESRLEEADQLYRQAISMRPDFKQAYISRGEL 499
Cdd:COG4235 75 ERALALDPDNPEALYLLG-LAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
491-672 |
1.19e-12 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 68.52 E-value: 1.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 491 QAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQE 570
Cdd:TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 571 SGEVKlrpEARKRLLSYINEE--PLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKA 648
Cdd:TIGR02521 112 QGKYE---QAMQQFEQAIEDPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188
|
170 180
....*....|....*....|....
gi 1488192476 649 LPILEELLRYYPDHIKGLILKGDI 672
Cdd:TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRI 212
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
348-438 |
5.77e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 64.60 E-value: 5.77e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 348 TFHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAE 427
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAK 142
|
90
....*....|.
gi 1488192476 428 ESYMMAKSLMP 438
Cdd:COG5010 143 AALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
382-487 |
2.18e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 62.67 E-value: 2.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 382 ALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAARIAPNHLNVYINL 461
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYY--------------EKALALSPDNPNAYSNL 128
|
90 100
....*....|....*....|....*.
gi 1488192476 462 AnLIRANESRLEEADQLYRQAISMRP 487
Cdd:COG5010 129 A-ALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
613-739 |
2.37e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 61.95 E-value: 2.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 613 EAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQKkDILGAKKCFERILE 692
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG-DTEEAEELLERALA 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1488192476 693 MDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHEE---YIQRHLN 739
Cdd:COG4235 80 LDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAparLLEASIA 129
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
471-625 |
4.03e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.90 E-value: 4.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 471 RLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRA 550
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1488192476 551 LELNPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQ 625
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKD---EAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
630-738 |
4.97e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 61.36 E-value: 4.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 630 SALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQKkDILGAKKCFERILEMDPSNVQGKHNLCVVYF 709
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLG-DLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100
....*....|....*....|....*....
gi 1488192476 710 EEKDLLKAERCLLETLALAPHEEYIQRHL 738
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRL 112
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
365-514 |
5.47e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 63.49 E-value: 5.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 365 ALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYMmakslmpQIIPGK 444
Cdd:COG0457 102 ALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLE-------KLEAAA 174
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 445 KYAARIAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYL 514
Cdd:COG0457 175 LAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
382-488 |
5.99e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 59.80 E-value: 5.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 382 ALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEEsYmmakslmpqiipgkKYAARIAPNHLNVYINL 461
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-L--------------EKALKLDPNNAEALLNL 65
|
90 100
....*....|....*....|....*..
gi 1488192476 462 AnLIRANESRLEEADQLYRQAISMRPD 488
Cdd:COG3063 66 A-ELLLELGDYDEALAYLERALELDPS 91
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
369-552 |
6.57e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 59.93 E-value: 6.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 369 NKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAA 448
Cdd:COG4785 69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDF--------------DRAL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 449 RIAPNHLNVYINLAnLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNkPLKAKEAYLKAleldrnnadlWy 528
Cdd:COG4785 135 ELDPDYAYAYLNRG-IALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLD-PEKALALLLED----------W- 201
|
170 180
....*....|....*....|....
gi 1488192476 529 nlAIVHIELKEPNEALKNFNRALE 552
Cdd:COG4785 202 --ATAYLLQGDTEEARELFKLALA 223
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
446-710 |
1.07e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 59.54 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 446 YAARIAPNHLNVYINLANLIRANES--RLEEADQLYRQAISMRPDFKQAYISRGELLLkmnkplkAKEAYLKALELDrNN 523
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILlaALLFAAVLALAIALADLALALAAAALAAAAL-------AAERIDRALALP-DL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 524 ADLWYNLAIVHIELKEPNEALKNFNRALELNPKhklalfnsaivmqesgevklRPEArkrllsyineepldangYFNLGM 603
Cdd:COG4785 73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPD--------------------LAEA-----------------YNNRGL 115
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 604 LAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGdiLMNQKKDILGA 683
Cdd:COG4785 116 AYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLY--LAERKLDPEKA 193
|
250 260
....*....|....*....|....*..
gi 1488192476 684 KKCFERILEMDPSNvQGKHNLCVVYFE 710
Cdd:COG4785 194 LALLLEDWATAYLL-QGDTEEARELFK 219
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
354-518 |
4.07e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 57.62 E-value: 4.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 354 DWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYMMA 433
Cdd:COG4785 88 DYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKA 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 434 KSLMPQiipgkkyaarIAPNHLNVYINLANLiranesRLEEADQLYRQAISMrpdfkqAYISRGElllkmnkPLKAKEAY 513
Cdd:COG4785 168 LELDPN----------DPERALWLYLAERKL------DPEKALALLLEDWAT------AYLLQGD-------TEEARELF 218
|
....*
gi 1488192476 514 LKALE 518
Cdd:COG4785 219 KLALA 223
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
533-661 |
4.37e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.41 E-value: 4.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 533 VHIELKEPNEALKNFNRALELNPKhklalfnsaivmqesgevklrpearkrllsyineeplDANGYFNLGMLAMDDKKDN 612
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD-------------------------------------NADALNNLGLLLLEQGRYD 43
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1488192476 613 EAEIWmKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPD 661
Cdd:COG3063 44 EAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
604-699 |
9.72e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.25 E-value: 9.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 604 LAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPiLEELLRYYPDHIKGLILKGDILMNQkKDILGA 683
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL-GDYDEA 78
|
90
....*....|....*.
gi 1488192476 684 KKCFERILEMDPSNVQ 699
Cdd:COG3063 79 LAYLERALELDPSALR 94
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
500-592 |
2.13e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 53.07 E-value: 2.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 500 LLKMNKPLKAKEAYLKALELDRNN---ADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKL---ALFNSAIVMQESGE 573
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGD 82
|
90
....*....|....*....
gi 1488192476 574 vklRPEARKRLLSYINEEP 592
Cdd:COG1729 83 ---YDKARATLEELIKKYP 98
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
624-738 |
2.91e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 55.89 E-value: 2.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 624 LQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMnQKKDILGAKKCFERILEMDPSNVQGKHN 703
Cdd:COG2956 3 LPVAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYR-RRGEYDRAIRIHQKLLERDPDRAEALLE 81
|
90 100 110
....*....|....*....|....*....|....*
gi 1488192476 704 LCVVYFEEKDLLKAERCLLETLALAPHEEYIQRHL 738
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLL 116
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
576-729 |
4.71e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.04 E-value: 4.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 576 LRPEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEEL 655
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1488192476 656 LRYYPDHIKGLILKGDILMnQKKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAP 729
Cdd:COG5010 81 LQLDPNNPELYYNLALLYS-RSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
365-451 |
5.32e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 52.32 E-value: 5.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 365 ALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYMMAKSLMPQIIPGK 444
Cdd:COG4235 43 ALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
....*..
gi 1488192476 445 KYAARIA 451
Cdd:COG4235 123 LLEASIA 129
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
524-557 |
6.12e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 49.34 E-value: 6.12e-08
10 20 30
....*....|....*....|....*....|....
gi 1488192476 524 ADLWYNLAIVHIELKEPNEALKNFNRALELNPKH 557
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
638-729 |
6.51e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 50.94 E-value: 6.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 638 LYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQKkDILGAKKcFERILEMDPSNVQGKHNLCVVYFEEKDLLKA 717
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG-RYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEA 78
|
90
....*....|..
gi 1488192476 718 ERCLLETLALAP 729
Cdd:COG3063 79 LAYLERALELDP 90
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
468-560 |
7.05e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.53 E-value: 7.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 468 NESRLEEADQLYRQAISMRPDFK---QAYISRGELLLKMNKPLKAKEAYLKALELDRNN---ADLWYNLAIVHIELKEPN 541
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDYD 84
|
90
....*....|....*....
gi 1488192476 542 EALKNFNRALELNPKHKLA 560
Cdd:COG1729 85 KARATLEELIKKYPDSEAA 103
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
349-438 |
1.07e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 50.55 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 349 FHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKyFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEE 428
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 1488192476 429 SYMMAKSLMP 438
Cdd:COG3063 81 YLERALELDP 90
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
491-692 |
1.23e-07 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 54.17 E-value: 1.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 491 QAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPkhklalfnsaivmqE 570
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP--------------D 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 571 SGEVKlrpearkrllsYIN----EEPLDANGYFNLG---MLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLY---- 639
Cdd:cd24142 67 GGYEK-----------YLYlgqlSGGEEALQYYEKGieiLEEELQALQAASAEAEEEAEELKRKLSSALCALAEIYmtdl 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1488192476 640 ------SQTAKELkalpiLEELLRYYPDHIKGLILKGDILMNQkKDILGAKKCFERILE 692
Cdd:cd24142 136 cdepdaEQRCEEL-----ITKALELDPTNPEALQTLASLRISQ-QRPDEAKEALRRSLE 188
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
624-744 |
1.70e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 51.50 E-value: 1.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 624 LQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQKKDILGAKKCFERILEMDPSNVQGKHN 703
Cdd:COG5010 14 LLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYN 93
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1488192476 704 LCVVYFEEKDLLKAERCLLETLALAPHEEYIQRHLNIVRDK 744
Cdd:COG5010 94 LALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLS 134
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
508-624 |
2.96e-07 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 51.21 E-value: 2.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 508 KAKEAYLKALELDRNNAD---LWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEvKLRPEARKRl 584
Cdd:PRK02603 53 EALENYEEALKLEEDPNDrsyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE-KAEEAGDQD- 130
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1488192476 585 lsyineeplDANGYFnlgmlamddkkDNEAEIWmKKAIKL 624
Cdd:PRK02603 131 ---------EAEALF-----------DKAAEYW-KQAIRL 149
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
524-557 |
6.25e-07 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 46.29 E-value: 6.25e-07
10 20 30
....*....|....*....|....*....|....
gi 1488192476 524 ADLWYNLAIVHIELKEPNEALKNFNRALELNPKH 557
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
524-556 |
1.21e-06 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 45.59 E-value: 1.21e-06
10 20 30
....*....|....*....|....*....|...
gi 1488192476 524 ADLWYNLAIVHIELKEPNEALKNFNRALELNPK 556
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
492-556 |
3.09e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.84 E-value: 3.09e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1488192476 492 AYISRGELLLKMNKPLKAKEAYLKALELDR--------NNADLWYNLAIVHIELKEPNEALKNFNRALELNPK 556
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARrllgpdhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
529-745 |
5.17e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 48.37 E-value: 5.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 529 NLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKLRPEARKRLLSYINEE---PLDANGYFNLGMLA 605
Cdd:COG4785 4 LALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAlalPDLAQLYYERGVAY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 606 MDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALpileellryypdhikglilkgdilmnqkKDilgakk 685
Cdd:COG4785 84 DSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAAL----------------------------ED------ 129
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 686 cFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHEEYIQRHLNIVRDKI 745
Cdd:COG4785 130 -FDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKL 188
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
388-657 |
6.33e-06 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 49.14 E-value: 6.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 388 NFERALKYFLQATHVQPD-DIGAHMNVGRTYKNLNRTKEAEESymmAKSLmPQIIPGKKYAARIApnhLNVYINLAN--- 463
Cdd:COG3071 65 DYERRDEYLAQALELAPEaELAVLLTRAELLLDQGQAEQALAT---LEAL-RAGAPRHPQVLRLL---LQAYRQLGDwee 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 464 -------LIRANESRLEEADQLYRQAISmrpdfkqayisrgELLLKMNKPLKAKEAYLKAL-ELDRNNADLWYNLAIVHI 535
Cdd:COG3071 138 llellpaLRKHKALSAEEAQALERRAYL-------------GLLRQAARDAEALKALWKALpRAERRDPELAAAYARALI 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 536 ELKEPNEALKNFNRALELNPKHKLALfnsaiVMQESgEVKLRPEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAE 615
Cdd:COG3071 205 ALGDHDEAERLLREALKRQWDPRLVR-----LYGRL-QGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAR 278
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1488192476 616 IWMKKAIKLQADfRSALFNLALLYSQTAKELKALPILEELLR 657
Cdd:COG3071 279 EYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALA 319
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
512-545 |
6.45e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 43.30 E-value: 6.45e-06
10 20 30
....*....|....*....|....*....|....
gi 1488192476 512 AYLKALELDRNNADLWYNLAIVHIELKEPNEALK 545
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
359-526 |
1.76e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 48.44 E-value: 1.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 359 YTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYMMAKSLMP 438
Cdd:TIGR00990 385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 439 QI--IPG----------------KKYAARIA------PNHLNV--YINLANLIRANESRLEEADQLYRQAISMRPDFKQA 492
Cdd:TIGR00990 465 EApdVYNyygellldqnkfdeaiEKFDTAIEleketkPMYMNVlpLINKALALFQWKQDFIEAENLCEKALIIDPECDIA 544
|
170 180 190
....*....|....*....|....*....|....
gi 1488192476 493 YISRGELLLKMNKPLKAKEAYLKALELDRNNADL 526
Cdd:TIGR00990 545 VATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
578-662 |
2.57e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.21 E-value: 2.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 578 PEARKRLLSYINEEP---LDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQAD---FRSALFNLALLYSQTAKELKALPI 651
Cdd:COG1729 10 DEAIAAFKAFLKRYPnspLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDKARAT 89
|
90
....*....|.
gi 1488192476 652 LEELLRYYPDH 662
Cdd:COG1729 90 LEELIKKYPDS 100
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
491-523 |
8.75e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.10 E-value: 8.75e-05
10 20 30
....*....|....*....|....*....|...
gi 1488192476 491 QAYISRGELLLKMNKPLKAKEAYLKALELDRNN 523
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
491-523 |
1.24e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.74 E-value: 1.24e-04
10 20 30
....*....|....*....|....*....|...
gi 1488192476 491 QAYISRGELLLKMNKPLKAKEAYLKALELDRNN 523
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
491-534 |
1.37e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 39.76 E-value: 1.37e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 1488192476 491 QAYISRGELLlkmnkplKAKEAYLKALELDRNNADLWYNLAIVH 534
Cdd:pfam13414 2 DAYYEQGKYE-------EAIEAYKKALKLDPDNPEAYYNLGLAY 38
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
509-560 |
1.43e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 40.65 E-value: 1.43e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1488192476 509 AKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLA 560
Cdd:pfam14559 7 ALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRY 58
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
373-406 |
2.87e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.94 E-value: 2.87e-04
10 20 30
....*....|....*....|....*....|....
gi 1488192476 373 AKLWNNVGHALENEKNFERALKYFLQATHVQPDD 406
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
508-555 |
2.93e-04 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 44.01 E-value: 2.93e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 508 KAKEA------------YLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNP 555
Cdd:PLN03088 8 KAKEAfvdddfalavdlYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP 67
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
509-624 |
4.31e-04 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 41.92 E-value: 4.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 509 AKEAYLKALELDRNNAD---LWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKLRpearkrll 585
Cdd:CHL00033 54 ALQNYYEAMRLEIDPYDrsyILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIE-------- 125
|
90 100 110
....*....|....*....|....*....|....*....
gi 1488192476 586 syiNEEPLDANGYFnlgmlamddkkDNEAEIWmKKAIKL 624
Cdd:CHL00033 126 ---QGDSEIAEAWF-----------DQAAEYW-KQAIAL 149
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
496-557 |
4.93e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 39.24 E-value: 4.93e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1488192476 496 RGELLLKMNKPLKAKEAYLKALELDRN---NADLWYNLAIVHIELKEPNEALKNFNRALELNPKH 557
Cdd:pfam13432 3 LARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
372-430 |
5.40e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.36 E-value: 5.40e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1488192476 372 NAKLWnnVGHALENEKNFERALKYFLQATHVQPDDI---GAHMNVGRTYKNLNRTKEAEESY 430
Cdd:COG1729 31 DALYW--LGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDKARATL 90
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
373-406 |
5.78e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.81 E-value: 5.78e-04
10 20 30
....*....|....*....|....*....|....
gi 1488192476 373 AKLWNNVGHALENEKNFERALKYFLQATHVQPDD 406
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
603-696 |
5.94e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.36 E-value: 5.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 603 MLAMDDKKDNEAEIWMKKAIKLQADFR---SALFNLALLYSQTAKELKALPILEELLRYYPDHIK---GLILKGDILMNQ 676
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLEL 80
|
90 100
....*....|....*....|
gi 1488192476 677 kKDILGAKKCFERILEMDPS 696
Cdd:COG1729 81 -GDYDKARATLEELIKKYPD 99
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
524-556 |
7.50e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 37.76 E-value: 7.50e-04
10 20 30
....*....|....*....|....*....|...
gi 1488192476 524 ADLWYNLAIVHIELKEPNEALKNFNRALELNPK 556
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
497-558 |
9.74e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 41.79 E-value: 9.74e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1488192476 497 GELLLKMNKPLKAKEAYLKALE-LDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHK 558
Cdd:COG4700 96 ADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFK 158
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
469-531 |
1.38e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.95 E-value: 1.38e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1488192476 469 ESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLA 531
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLA 63
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
422-592 |
1.67e-03 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 41.72 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 422 RTKEAEESYMMAKSLmpQIIPGKKYAARIApnHLnvYINLANLIRANeSRLEEADQLYRQAISMRPDFKQAYISRGELLL 501
Cdd:PRK11788 153 QEKDWQKAIDVAERL--EKLGGDSLRVEIA--HF--YCELAQQALAR-GDLDAARALLKKALAADPQCVRASILLGDLAL 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 502 KMNKPLKAKEAYLKALELDRN----NADLWYNlaiVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGevklR 577
Cdd:PRK11788 226 AQGDYAAAIEALERVEEQDPEylseVLPKLME---CYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEG----P 298
|
170
....*....|....*
gi 1488192476 578 PEARKRLLSYINEEP 592
Cdd:PRK11788 299 EAAQALLREQLRRHP 313
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
524-584 |
1.69e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 37.75 E-value: 1.69e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1488192476 524 ADLWYNLAIVHIELKEPNEALKNFNRALEL-----NPKHKL---ALFNSAIVMQESGEvklRPEARKRL 584
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllGPDHPLtatTLLNLGRLYLELGR---YEEALELL 68
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
382-499 |
1.83e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.82 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 382 ALENEKNFERALKYFLQATHVQPDDI---GAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAARIAPNH---L 455
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAF--------------EKLLKRYPDSpkaP 67
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1488192476 456 NVYINLAnLIRANESRLEEADQLYRQAISMRPDFKQAYISRGEL 499
Cdd:COG1729 68 DALLKLG-LSYLELGDYDKARATLEELIKKYPDSEAAKEARARL 110
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
388-553 |
3.62e-03 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 40.37 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 388 NFERALKYFLQA-THVQPDD----IGAHMNVGRTYKNLNRTKEAEESYMMAKSLmpqiipgkkyaARiAPNHLNV----Y 458
Cdd:pfam17874 16 DAERALELAEQAlALLPEDDllarGLATFVLGEAYLCLGDLDAALQAMREAEAL-----------AR-RADSPHVtlwaL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 459 INLANLIRAnESRLEEADQLYRQAISMRPDFKQA--------YISRGELLLKMNKPLKAKEAYLKALELDRnnadLWYNL 530
Cdd:pfam17874 84 LQQGEILRA-QGRLHQALETYQQALQLARDHGLQhlplhgflLVGLADLLYEWNDLEEAEQHAQQGIQLGR----QWEPD 158
|
170 180 190
....*....|....*....|....*....|..
gi 1488192476 531 AIVHIELK---------EPNEALKNFNRALEL 553
Cdd:pfam17874 159 AAVDAYVLlarialaqgELEEALTLLRRAELL 190
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
491-522 |
3.80e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 35.45 E-value: 3.80e-03
10 20 30
....*....|....*....|....*....|..
gi 1488192476 491 QAYISRGELLLKMNKPLKAKEAYLKALELDRN 522
Cdd:pfam13181 2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
373-405 |
5.65e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.19 E-value: 5.65e-03
10 20 30
....*....|....*....|....*....|...
gi 1488192476 373 AKLWNNVGHALENEKNFERALKYFLQATHVQPD 405
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_14 |
pfam13428 |
Tetratricopeptide repeat; |
524-565 |
5.79e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463874 [Multi-domain] Cd Length: 44 Bit Score: 35.48 E-value: 5.79e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1488192476 524 ADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSA 565
Cdd:pfam13428 1 PEALLALARALLALGDPDEALALLERALALDPDDPEAWLALA 42
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
492-522 |
6.23e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.19 E-value: 6.23e-03
10 20 30
....*....|....*....|....*....|.
gi 1488192476 492 AYISRGELLLKMNKPLKAKEAYLKALELDRN 522
Cdd:pfam07719 3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
373-439 |
6.73e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.21 E-value: 6.73e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1488192476 373 AKLWNNVGHALENEKNFERALKYFLQA----------THvqPDDIGAHMNVGRTYKNLNRTKEAEESYMMAKSLMPQ 439
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKAleiarrllgpDH--PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
409-488 |
7.28e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.21 E-value: 7.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192476 409 AHMNVGRTYKNLNRTKEAEESYMMAKSLMpQIIPGKKYaariaPNHLNVYINLANLIRANEsRLEEADQLYRQAISMRPD 488
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIA-RRLLGPDH-----PLTATTLLNLGRLYLELG-RYEEALELLERALALAEK 77
|
|
| |
