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Conserved domains on  [gi|663429590|ref|NP_001287662|]
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large ribosomal subunit protein bL9m isoform 2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RplI super family cl29499
Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L9 ...
 95-191 2.80e-16

Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L9 is part of the Pathway/BioSystem: Ribosome 50S subunit


The actual alignment was detected with superfamily member COG0359:

Pssm-ID: 440128  Cd Length: 147  Bit Score: 72.74  E-value: 2.80e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663429590  95 ELILTQSVENVGVRGDLVSVKKSLGRNRLLPQGLAVYASPENKKLFEEEKLLRQE-------------GKLE----KIQT 157
Cdd:COG0359    2 KVILLEDVKGLGKKGDVVEVKDGYARNYLIPQGLAVEATKGNLKQLEARRAALEAkeaeelaeaealaEKLEgltvTIKA 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 663429590 158 KAGE------------------ALGVVVAPHTLKLPeEPITRWGEYwcEVTV 191
Cdd:COG0359   82 KAGEggklfgsvttkdiaealkAQGIEIDKRKIELP-GPIKTLGEY--EVTV 130
 
Name Accession Description Interval E-value
RplI COG0359
Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L9 ...
 95-191 2.80e-16

Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L9 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440128  Cd Length: 147  Bit Score: 72.74  E-value: 2.80e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663429590  95 ELILTQSVENVGVRGDLVSVKKSLGRNRLLPQGLAVYASPENKKLFEEEKLLRQE-------------GKLE----KIQT 157
Cdd:COG0359    2 KVILLEDVKGLGKKGDVVEVKDGYARNYLIPQGLAVEATKGNLKQLEARRAALEAkeaeelaeaealaEKLEgltvTIKA 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 663429590 158 KAGE------------------ALGVVVAPHTLKLPeEPITRWGEYwcEVTV 191
Cdd:COG0359   82 KAGEggklfgsvttkdiaealkAQGIEIDKRKIELP-GPIKTLGEY--EVTV 130
Ribosomal_L9_N pfam01281
Ribosomal protein L9, N-terminal domain;
95-140 9.31e-16

Ribosomal protein L9, N-terminal domain;


Pssm-ID: 460146  Cd Length: 47  Bit Score: 68.56  E-value: 9.31e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 663429590   95 ELILTQSVENVGVRGDLVSVKKSLGRNRLLPQGLAVYASPENKKLF 140
Cdd:pfam01281   2 KVILLEDVKGLGKKGDVVEVKDGYARNFLIPRGLAVYATPENLKEL 47
L9 TIGR00158
ribosomal protein L9; Ribosomal protein L9 appears to be universal in, but restricted to, ...
 94-154 4.05e-08

ribosomal protein L9; Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 129262  Cd Length: 148  Bit Score: 50.85  E-value: 4.05e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 663429590   94 LELILTQSVENVGVRGDLVSVKKSLGRNRLLPQGLAVYASPENKKLFeEEKLLRQEGKLEK 154
Cdd:TIGR00158   1 MKVILLEDVANLGKRGDVVEVKDGYARNFLIPKGLAVPATKKNIEFF-EARRKKLEEKLAA 60
rpl9 CHL00160
ribosomal protein L9; Provisional
 91-159 5.01e-04

ribosomal protein L9; Provisional


Pssm-ID: 214378  Cd Length: 153  Bit Score: 39.37  E-value: 5.01e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 663429590  91 KENLELILTQSVENVGVRGDLVSVKKSLGRNRLLPQGLAVYASPENKKLFEEEKLLRQEgKLEKIQTKA 159
Cdd:CHL00160   3 KKKIQVILKENIQKLGKSGTVIKVKSGYARNYLIPNKMAKVATQGSLKQQKMYQKILDL-KLKEAKEKC 70
 
Name Accession Description Interval E-value
RplI COG0359
Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L9 ...
 95-191 2.80e-16

Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L9 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440128  Cd Length: 147  Bit Score: 72.74  E-value: 2.80e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663429590  95 ELILTQSVENVGVRGDLVSVKKSLGRNRLLPQGLAVYASPENKKLFEEEKLLRQE-------------GKLE----KIQT 157
Cdd:COG0359    2 KVILLEDVKGLGKKGDVVEVKDGYARNYLIPQGLAVEATKGNLKQLEARRAALEAkeaeelaeaealaEKLEgltvTIKA 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 663429590 158 KAGE------------------ALGVVVAPHTLKLPeEPITRWGEYwcEVTV 191
Cdd:COG0359   82 KAGEggklfgsvttkdiaealkAQGIEIDKRKIELP-GPIKTLGEY--EVTV 130
Ribosomal_L9_N pfam01281
Ribosomal protein L9, N-terminal domain;
95-140 9.31e-16

Ribosomal protein L9, N-terminal domain;


Pssm-ID: 460146  Cd Length: 47  Bit Score: 68.56  E-value: 9.31e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 663429590   95 ELILTQSVENVGVRGDLVSVKKSLGRNRLLPQGLAVYASPENKKLF 140
Cdd:pfam01281   2 KVILLEDVKGLGKKGDVVEVKDGYARNFLIPRGLAVYATPENLKEL 47
L9 TIGR00158
ribosomal protein L9; Ribosomal protein L9 appears to be universal in, but restricted to, ...
 94-154 4.05e-08

ribosomal protein L9; Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 129262  Cd Length: 148  Bit Score: 50.85  E-value: 4.05e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 663429590   94 LELILTQSVENVGVRGDLVSVKKSLGRNRLLPQGLAVYASPENKKLFeEEKLLRQEGKLEK 154
Cdd:TIGR00158   1 MKVILLEDVANLGKRGDVVEVKDGYARNFLIPKGLAVPATKKNIEFF-EARRKKLEEKLAA 60
rpl9 CHL00160
ribosomal protein L9; Provisional
 91-159 5.01e-04

ribosomal protein L9; Provisional


Pssm-ID: 214378  Cd Length: 153  Bit Score: 39.37  E-value: 5.01e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 663429590  91 KENLELILTQSVENVGVRGDLVSVKKSLGRNRLLPQGLAVYASPENKKLFEEEKLLRQEgKLEKIQTKA 159
Cdd:CHL00160   3 KKKIQVILKENIQKLGKSGTVIKVKSGYARNYLIPNKMAKVATQGSLKQQKMYQKILDL-KLKEAKEKC 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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