putative cleavage and polyadenylation specificity factor subunit 4-like protein [Homo sapiens]
zinc finger CCCH domain-containing protein( domain architecture ID 708395)
zinc finger CCCH domain-containing protein similar to cleavage and polyadenylation specificity factor (CPSF) subunit 4, which is part of the complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
YTH1 super family | cl25862 | Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ... |
12-160 | 1.14e-28 | ||||
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]; The actual alignment was detected with superfamily member COG5084: Pssm-ID: 227416 [Multi-domain] Cd Length: 285 Bit Score: 107.26 E-value: 1.14e-28
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Name | Accession | Description | Interval | E-value | ||||
YTH1 | COG5084 | Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ... |
12-160 | 1.14e-28 | ||||
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]; Pssm-ID: 227416 [Multi-domain] Cd Length: 285 Bit Score: 107.26 E-value: 1.14e-28
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zf-CCCH_3 | pfam15663 | Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically ... |
41-117 | 9.02e-07 | ||||
Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically between 155 and 169 amino acids in length. Pssm-ID: 464787 [Multi-domain] Cd Length: 110 Bit Score: 45.53 E-value: 9.02e-07
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ZnF_C3H1 | smart00356 | zinc finger; |
63-86 | 2.13e-04 | ||||
zinc finger; Pssm-ID: 214632 [Multi-domain] Cd Length: 27 Bit Score: 36.84 E-value: 2.13e-04
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Name | Accession | Description | Interval | E-value | ||||
YTH1 | COG5084 | Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ... |
12-160 | 1.14e-28 | ||||
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]; Pssm-ID: 227416 [Multi-domain] Cd Length: 285 Bit Score: 107.26 E-value: 1.14e-28
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zf-CCCH_3 | pfam15663 | Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically ... |
41-117 | 9.02e-07 | ||||
Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically between 155 and 169 amino acids in length. Pssm-ID: 464787 [Multi-domain] Cd Length: 110 Bit Score: 45.53 E-value: 9.02e-07
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ZnF_C3H1 | smart00356 | zinc finger; |
63-86 | 2.13e-04 | ||||
zinc finger; Pssm-ID: 214632 [Multi-domain] Cd Length: 27 Bit Score: 36.84 E-value: 2.13e-04
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zf_CCCH_4 | pfam18345 | Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ... |
68-86 | 9.98e-04 | ||||
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process. Pssm-ID: 465719 [Multi-domain] Cd Length: 19 Bit Score: 35.09 E-value: 9.98e-04
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ZnF_C3H1 | smart00356 | zinc finger; |
119-144 | 6.61e-03 | ||||
zinc finger; Pssm-ID: 214632 [Multi-domain] Cd Length: 27 Bit Score: 32.99 E-value: 6.61e-03
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Blast search parameters | ||||
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