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Conserved domains on  [gi|209870396|pdb|3BHJ|A]
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Chain A, Carbonyl reductase [NADPH] 1

Protein Classification

SDR family oxidoreductase( domain architecture ID 10143144)

SDR family NAD(P)-dependent oxidoreductase with similarity to mammalian carbonyl reductase, which catalyzes the NADPH-dependent reduction of a wide range of substrates including quinones, prostaglandins, and other carbonyl-containing compounds

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
carb_red_PTCR-like_SDR_c cd05324
Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs; PTCR is a classical SDR ...
5-276 8.61e-127

Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs; PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


:

Pssm-ID: 187585 [Multi-domain]  Cd Length: 225  Bit Score: 359.63  E-value: 8.61e-127
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        5 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:cd05324   1 KVALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAVEKLRAEGLSVRFHQLDVTDDASIEAAADFVEEKYGGLD 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       85 VLVNNAGIAFKVADP-TPFHIQAEVTMKTNFFGTRDVCTELLPLIKP--QGRVVNVSSIMSVRalkscspelqqkfrset 161
Cdd:cd05324  81 ILVNNAGIAFKGFDDsTPTREQARETMKTNFFGTVDVTQALLPLLKKspAGRIVNVSSGLGSL----------------- 143
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      162 iteeelvglmnkfvedtkkgvhqkegwpSSAYGVTKIGVTVLSRIHARKLSEqrkgDKILLNACCPGWVRTDMAGPKATK 241
Cdd:cd05324 144 ----------------------------TSAYGVSKAALNALTRILAKELKE----TGIKVNACCPGWVKTDMGGGKAPK 191
                       250       260       270
                ....*....|....*....|....*....|....*
3BHJ_A      242 SPEEGAETPVYLALLPPDAEgPHGQFVSEKRVEQW 276
Cdd:cd05324 192 TPEEGAETPVYLALLPPDGE-PTGKFFSDKKVVPW 225
 
Name Accession Description Interval E-value
carb_red_PTCR-like_SDR_c cd05324
Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs; PTCR is a classical SDR ...
5-276 8.61e-127

Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs; PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187585 [Multi-domain]  Cd Length: 225  Bit Score: 359.63  E-value: 8.61e-127
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        5 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:cd05324   1 KVALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAVEKLRAEGLSVRFHQLDVTDDASIEAAADFVEEKYGGLD 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       85 VLVNNAGIAFKVADP-TPFHIQAEVTMKTNFFGTRDVCTELLPLIKP--QGRVVNVSSIMSVRalkscspelqqkfrset 161
Cdd:cd05324  81 ILVNNAGIAFKGFDDsTPTREQARETMKTNFFGTVDVTQALLPLLKKspAGRIVNVSSGLGSL----------------- 143
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      162 iteeelvglmnkfvedtkkgvhqkegwpSSAYGVTKIGVTVLSRIHARKLSEqrkgDKILLNACCPGWVRTDMAGPKATK 241
Cdd:cd05324 144 ----------------------------TSAYGVSKAALNALTRILAKELKE----TGIKVNACCPGWVKTDMGGGKAPK 191
                       250       260       270
                ....*....|....*....|....*....|....*
3BHJ_A      242 SPEEGAETPVYLALLPPDAEgPHGQFVSEKRVEQW 276
Cdd:cd05324 192 TPEEGAETPVYLALLPPDGE-PTGKFFSDKKVVPW 225
FabG COG1028
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family [Lipid transport and ...
6-268 2.19e-42

NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family [Lipid transport and metabolism]; NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440651 [Multi-domain]  Cd Length: 249  Bit Score: 145.31  E-value: 2.19e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:COG1028   8 VALVTGGSSGIGRAIARALAA--EGaRVVITDRDAEALEAAAAELRAAGGRALAVAADVTDEAAVEALVAAAVAAFGRLD 85
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       85 VLVNNAGIafkvADPTPFH-IQAEV---TMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMSVRALKscspelqqkfr 158
Cdd:COG1028  86 ILVNNAGI----TPPGPLEeLTEEDwdrVLDVNLKGPFLLTRAALPHMRERggGRIVNISSIAGLRGSP----------- 150
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      159 setiteeelvglmnkfvedtkkgvhqkeGWpsSAYGVTKIGVTVLSRIHARKLseqrKGDKILLNACCPGWVRTDMAGPK 238
Cdd:COG1028 151 ----------------------------GQ--AAYAASKAAVVGLTRSLALEL----APRGIRVNAVAPGPIDTPMTRAL 196
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*..
3BHJ_A      239 ATK-----------------SPEEGAEtpVYLALLPPDAEGPHGQFV 268
Cdd:COG1028 197 LGAeevrealaariplgrlgTPEEVAA--AVLFLASDAASYITGQVL 241
adh_short pfam00106
short chain dehydrogenase; This family contains a wide variety of dehydrogenases.
6-238 4.36e-36

short chain dehydrogenase; This family contains a wide variety of dehydrogenases.


Pssm-ID: 395056 [Multi-domain]  Cd Length: 195  Bit Score: 127.34  E-value: 4.36e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A          6 VALVTGGNKGIGLAIVRdlcRLFS--GDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:pfam00106   2 VALVTGASSGIGRAIAK---RLAKegAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTDRAQVKALVEQAVERLGRL 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         84 DVLVNNAGIafkvADPTPFHIQAEV----TMKTNFFGTRDVCTELLPLIK--PQGRVVNVSSImsvralkscspelqqkf 157
Cdd:pfam00106  79 DILVNNAGI----TGLGPFSELSDEdwerVIDVNLTGVFNLTRAVLPAMIkgSGGRIVNISSV----------------- 137
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        158 rsetiteeelVGLMnkfvedtkkgvhqkeGWPS-SAYGVTKIGVTVLSRIHARKLSEqrkgDKILLNACCPGWVRTDMAG 236
Cdd:pfam00106 138 ----------AGLV---------------PYPGgSAYSASKAAVIGFTRSLALELAP----HGIRVNAVAPGGVDTDMTK 188

                  ..
3BHJ_A        237 PK 238
Cdd:pfam00106 189 EL 190
fabG PRK05653
3-oxoacyl-ACP reductase FabG;
6-254 1.63e-28

3-oxoacyl-ACP reductase FabG;


Pssm-ID: 235546 [Multi-domain]  Cd Length: 246  Bit Score: 109.09  E-value: 1.63e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfsG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK05653   7 TALVTGASRGIGRAIALRLAAD--GaKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGALD 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        85 VLVNNAGIafkvADPTPFH-IQAE---VTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSImsvralkscspelqqkfr 158
Cdd:PRK05653  85 ILVNNAGI----TRDALLPrMSEEdwdRVIDVNLTGTFNVVRAALPPMIKAryGRIVNISSV------------------ 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       159 setiteeelVGLMnkfvedtkkgvhqkeGWP-SSAYGVTKIGVTVLSRIHARKLseqrKGDKILLNACCPGWVRTDM--- 234
Cdd:PRK05653 143 ---------SGVT---------------GNPgQTNYSAAKAGVIGFTKALALEL----ASRGITVNAVAPGFIDTDMteg 194
                        250       260       270
                 ....*....|....*....|....*....|..
3BHJ_A       235 --AGPKATK----------SPEEGAETPVYLA 254
Cdd:PRK05653 195 lpEEVKAEIlkeiplgrlgQPEEVANAVAFLA 226
3oxo_ACP_reduc TIGR01830
3-oxoacyl-(acyl-carrier-protein) reductase; This model represents 3-oxoacyl-[ACP] reductase, ...
7-234 2.07e-18

3-oxoacyl-(acyl-carrier-protein) reductase; This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. [Fatty acid and phospholipid metabolism, Biosynthesis]


Pssm-ID: 273824 [Multi-domain]  Cd Length: 239  Bit Score: 81.87  E-value: 2.07e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A          7 ALVTGGNKGIGLAIVRDLCRLFSgDVVLT-ARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:TIGR01830   1 ALVTGASRGIGRAIALKLAKEGA-KVIITyRSSEEGAEEVVEELKALGVKALGVVLDVSDREDVKAVVEEIEEELGTIDI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         86 LVNNAGI-----AFKVADPtpfhiQAEVTMKTNFFGTRDVCTELL-PLIKP-QGRVVNVSSImsvralkscspelqqkfr 158
Cdd:TIGR01830  80 LVNNAGItrdnlLMRMKEE-----DWDAVIDTNLTGVFNLTQAVLrIMIKQrSGRIINISSV------------------ 136
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
3BHJ_A        159 setiteeelVGLMnkfvedtkkgvhqkeGWPSSA-YGVTKIGVTVLSRIHARKLSeqRKGdkILLNACCPGWVRTDM 234
Cdd:TIGR01830 137 ---------VGLM---------------GNAGQAnYAASKAGVIGFTKSLAKELA--SRN--ITVNAVAPGFIDTDM 185
PKS_KR smart00822
This enzymatic domain is part of bacterial polyketide synthases; It catalyses the first step ...
8-102 4.24e-08

This enzymatic domain is part of bacterial polyketide synthases; It catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.


Pssm-ID: 214833 [Multi-domain]  Cd Length: 180  Bit Score: 51.71  E-value: 4.24e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A           8 LVTGGNKGIGLAIVRDLCRLFSGDVVLTAR---DVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:smart00822   4 LITGGLGGLGRALARWLAERGARRLVLLSRsgpDAPGAAALLAELEAAGARVTVVACDVADRDALAAVLAAIPAVEGPLT 83
                           90
                   ....*....|....*...
3BHJ_A          85 VLVNNAGiafkVADPTPF 102
Cdd:smart00822  84 GVIHAAG----VLDDGVL 97
 
Name Accession Description Interval E-value
carb_red_PTCR-like_SDR_c cd05324
Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs; PTCR is a classical SDR ...
5-276 8.61e-127

Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs; PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187585 [Multi-domain]  Cd Length: 225  Bit Score: 359.63  E-value: 8.61e-127
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        5 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:cd05324   1 KVALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAVEKLRAEGLSVRFHQLDVTDDASIEAAADFVEEKYGGLD 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       85 VLVNNAGIAFKVADP-TPFHIQAEVTMKTNFFGTRDVCTELLPLIKP--QGRVVNVSSIMSVRalkscspelqqkfrset 161
Cdd:cd05324  81 ILVNNAGIAFKGFDDsTPTREQARETMKTNFFGTVDVTQALLPLLKKspAGRIVNVSSGLGSL----------------- 143
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      162 iteeelvglmnkfvedtkkgvhqkegwpSSAYGVTKIGVTVLSRIHARKLSEqrkgDKILLNACCPGWVRTDMAGPKATK 241
Cdd:cd05324 144 ----------------------------TSAYGVSKAALNALTRILAKELKE----TGIKVNACCPGWVKTDMGGGKAPK 191
                       250       260       270
                ....*....|....*....|....*....|....*
3BHJ_A      242 SPEEGAETPVYLALLPPDAEgPHGQFVSEKRVEQW 276
Cdd:cd05324 192 TPEEGAETPVYLALLPPDGE-PTGKFFSDKKVVPW 225
SDR_c cd05233
classical (c) SDRs; SDRs are a functionally diverse family of oxidoreductases that have a ...
7-268 8.85e-43

classical (c) SDRs; SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212491 [Multi-domain]  Cd Length: 234  Bit Score: 145.89  E-value: 8.85e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        7 ALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRGQAAVQqLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:cd05233   1 ALVTGASSGIGRAIARRLAR--EGaKVVLADRNEEALAELAA-IEALGGNAVAVQADVSDEEDVEALVEEALEEFGRLDI 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       86 LVNNAGIAFkvaDPTPFHIQAEV---TMKTNFFGTRDVCTELLPLIK--PQGRVVNVSSIMSVRALKScspelqqkfrse 160
Cdd:cd05233  78 LVNNAGIAR---PGPLEELTDEDwdrVLDVNLTGVFLLTRAALPHMKkqGGGRIVNISSVAGLRPLPG------------ 142
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      161 titeeelvglmnkfvedtkkgvhqkegwpSSAYGVTKIGVTVLSRIHARKLseqrKGDKILLNACCPGWVRTDMAGPKAT 240
Cdd:cd05233 143 -----------------------------QAAYAASKAALEGLTRSLALEL----APYGIRVNAVAPGLVDTPMLAKLGP 189
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....
3BHJ_A      241 K----------------SPEEGAETPVYLALlpPDAEGPHGQFV 268
Cdd:cd05233 190 EeaekelaaaiplgrlgTPEEVAEAVVFLAS--DEASYITGQVI 231
FabG COG1028
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family [Lipid transport and ...
6-268 2.19e-42

NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family [Lipid transport and metabolism]; NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440651 [Multi-domain]  Cd Length: 249  Bit Score: 145.31  E-value: 2.19e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:COG1028   8 VALVTGGSSGIGRAIARALAA--EGaRVVITDRDAEALEAAAAELRAAGGRALAVAADVTDEAAVEALVAAAVAAFGRLD 85
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       85 VLVNNAGIafkvADPTPFH-IQAEV---TMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMSVRALKscspelqqkfr 158
Cdd:COG1028  86 ILVNNAGI----TPPGPLEeLTEEDwdrVLDVNLKGPFLLTRAALPHMRERggGRIVNISSIAGLRGSP----------- 150
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      159 setiteeelvglmnkfvedtkkgvhqkeGWpsSAYGVTKIGVTVLSRIHARKLseqrKGDKILLNACCPGWVRTDMAGPK 238
Cdd:COG1028 151 ----------------------------GQ--AAYAASKAAVVGLTRSLALEL----APRGIRVNAVAPGPIDTPMTRAL 196
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*..
3BHJ_A      239 ATK-----------------SPEEGAEtpVYLALLPPDAEGPHGQFV 268
Cdd:COG1028 197 LGAeevrealaariplgrlgTPEEVAA--AVLFLASDAASYITGQVL 241
YqjQ COG0300
Short-chain dehydrogenase [General function prediction only];
6-249 1.18e-40

Short-chain dehydrogenase [General function prediction only];


Pssm-ID: 440069 [Multi-domain]  Cd Length: 252  Bit Score: 140.77  E-value: 1.18e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLfsG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:COG0300   7 TVLITGASSGIGRALARALAAR--GaRVVLVARDAERLEALAAELRAAGARVEVVALDVTDPDAVAALAEAVLARFGPID 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       85 VLVNNAGIAF--KVADPTPFHIQAevTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMSVRALKScspelqqkfrse 160
Cdd:COG0300  85 VLVNNAGVGGggPFEELDLEDLRR--VFEVNVFGPVRLTRALLPLMRARgrGRIVNVSSVAGLRGLPG------------ 150
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      161 titeeelvglmnkfvedtkkgvhqkegwpSSAYGVTKIGVTVLSRIHARKLseqrKGDKILLNACCPGWVRTDMAGP--- 237
Cdd:COG0300 151 -----------------------------MAAYAASKAALEGFSESLRAEL----APTGVRVTAVCPGPVDTPFTARaga 197
                       250
                ....*....|....*
3BHJ_A      238 ---KATKSPEEGAET 249
Cdd:COG0300 198 pagRPLLSPEEVARA 212
retinol-DH_like_SDR_c_like cd05327
retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) ...
6-276 3.21e-38

retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs; Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212492 [Multi-domain]  Cd Length: 269  Bit Score: 135.04  E-value: 3.21e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPR--FHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:cd05327   3 VVVITGANSGIGKETARELAKR-GAHVIIACRNEEKGEEAAAEIKKETGNAKveVIQLDLSSLASVRQFAEEFLARFPRL 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       84 DVLVNNAGIAFKVADPTPFHIqaEVTMKTNFFGTRDVCTELLPLIK--PQGRVVNVSSIMSVRALKScspelqqkfrset 161
Cdd:cd05327  82 DILINNAGIMAPPRRLTKDGF--ELQFAVNYLGHFLLTNLLLPVLKasAPSRIVNVSSIAHRAGPID------------- 146
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      162 iteeelvglmnkFVEDTKKGVHQKEGWPssAYGVTKigvtvLSRI-HARKLSEQRKGDKILLNACCPGWVRTDM------ 234
Cdd:cd05327 147 ------------FNDLDLENNKEYSPYK--AYGQSK-----LANIlFTRELARRLEGTGVTVNALHPGVVRTELlrrngs 207
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*....
3BHJ_A      235 -------AGPKATKSPEEGAETPVYLALLpPDAEGPHGQFVSEKRVEQW 276
Cdd:cd05327 208 ffllyklLRPFLKKSPEQGAQTALYAATS-PELEGVSGKYFSDCKIKMS 255
adh_short pfam00106
short chain dehydrogenase; This family contains a wide variety of dehydrogenases.
6-238 4.36e-36

short chain dehydrogenase; This family contains a wide variety of dehydrogenases.


Pssm-ID: 395056 [Multi-domain]  Cd Length: 195  Bit Score: 127.34  E-value: 4.36e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A          6 VALVTGGNKGIGLAIVRdlcRLFS--GDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:pfam00106   2 VALVTGASSGIGRAIAK---RLAKegAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTDRAQVKALVEQAVERLGRL 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         84 DVLVNNAGIafkvADPTPFHIQAEV----TMKTNFFGTRDVCTELLPLIK--PQGRVVNVSSImsvralkscspelqqkf 157
Cdd:pfam00106  79 DILVNNAGI----TGLGPFSELSDEdwerVIDVNLTGVFNLTRAVLPAMIkgSGGRIVNISSV----------------- 137
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        158 rsetiteeelVGLMnkfvedtkkgvhqkeGWPS-SAYGVTKIGVTVLSRIHARKLSEqrkgDKILLNACCPGWVRTDMAG 236
Cdd:pfam00106 138 ----------AGLV---------------PYPGgSAYSASKAAVIGFTRSLALELAP----HGIRVNAVAPGGVDTDMTK 188

                  ..
3BHJ_A        237 PK 238
Cdd:pfam00106 189 EL 190
YdfG COG4221
NADP-dependent 3-hydroxy acid dehydrogenase YdfG [Energy production and conversion]; ...
6-260 1.59e-29

NADP-dependent 3-hydroxy acid dehydrogenase YdfG [Energy production and conversion]; NADP-dependent 3-hydroxy acid dehydrogenase YdfG is part of the Pathway/BioSystem: Pyrimidine degradation


Pssm-ID: 443365 [Multi-domain]  Cd Length: 240  Bit Score: 111.43  E-value: 1.59e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRGQAAVQQLqaeGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:COG4221   7 VALITGASSGIGAATARALAA--AGaRVVLAARRAERLEALAAEL---GGRALAVPLDVTDEAAVEAAVAAAVAEFGRLD 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       85 VLVNNAGIAF--KVADPTPFHIQAevTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMSVRALkscspelqqkfrse 160
Cdd:COG4221  82 VLVNNAGVALlgPLEELDPEDWDR--MIDVNVKGVLYVTRAALPAMRARgsGHIVNISSIAGLRPY-------------- 145
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      161 titeeelvglmnkfvedtkkgvhqkEGWpsSAYGVTKIGVTVLSRIharkLSEQRKGDKILLNACCPGWVRTDMAG---- 236
Cdd:COG4221 146 -------------------------PGG--AVYAATKAAVRGLSES----LRAELRPTGIRVTVIEPGAVDTEFLDsvfd 194
                       250       260       270
                ....*....|....*....|....*....|....*
3BHJ_A      237 ---PKATK--------SPEEGAETPVYLALLPPDA 260
Cdd:COG4221 195 gdaEAAAAvyegleplTPEDVAEAVLFALTQPAHV 229
fabG PRK05653
3-oxoacyl-ACP reductase FabG;
6-254 1.63e-28

3-oxoacyl-ACP reductase FabG;


Pssm-ID: 235546 [Multi-domain]  Cd Length: 246  Bit Score: 109.09  E-value: 1.63e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfsG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK05653   7 TALVTGASRGIGRAIALRLAAD--GaKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGALD 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        85 VLVNNAGIafkvADPTPFH-IQAE---VTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSImsvralkscspelqqkfr 158
Cdd:PRK05653  85 ILVNNAGI----TRDALLPrMSEEdwdRVIDVNLTGTFNVVRAALPPMIKAryGRIVNISSV------------------ 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       159 setiteeelVGLMnkfvedtkkgvhqkeGWP-SSAYGVTKIGVTVLSRIHARKLseqrKGDKILLNACCPGWVRTDM--- 234
Cdd:PRK05653 143 ---------SGVT---------------GNPgQTNYSAAKAGVIGFTKALALEL----ASRGITVNAVAPGFIDTDMteg 194
                        250       260       270
                 ....*....|....*....|....*....|..
3BHJ_A       235 --AGPKATK----------SPEEGAETPVYLA 254
Cdd:PRK05653 195 lpEEVKAEIlkeiplgrlgQPEEVANAVAFLA 226
DltE COG3967
Short-chain dehydrogenase involved in D-alanine esterification of teichoic acids [Cell wall ...
8-140 7.32e-26

Short-chain dehydrogenase involved in D-alanine esterification of teichoic acids [Cell wall/membrane/envelope biogenesis, Lipid transport and metabolism];


Pssm-ID: 443167 [Multi-domain]  Cd Length: 246  Bit Score: 102.16  E-value: 7.32e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        8 LVTGGNKGIGLAIVRDLCRLfsG-DVVLTARDvtrgQAAVQQLQAEglSPRFH--QLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:COG3967   9 LITGGTSGIGLALAKRLHAR--GnTVIITGRR----EEKLEEAAAA--NPGLHtiVLDVADPASIAALAEQVTAEFPDLN 80
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       85 VLVNNAGI--AFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIK--PQGRVVNVSSI 140
Cdd:COG3967  81 VLINNAGImrAEDLLDEAEDLADAEREITTNLLGPIRLTAAFLPHLKaqPEAAIVNVSSG 140
PRK12939 PRK12939
short chain dehydrogenase; Provisional
6-234 1.40e-25

short chain dehydrogenase; Provisional


Pssm-ID: 183833 [Multi-domain]  Cd Length: 250  Bit Score: 101.20  E-value: 1.40e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK12939   9 RALVTGAARGLGAAFAEALAE--AGaTVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGLD 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        85 VLVNNAGIAfKVADPTPFHIQA-EVTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSimsvralkscspelqqkfrset 161
Cdd:PRK12939  87 GLVNNAGIT-NSKSATELDIDTwDAVMNVNVRGTFLMLRAALPHLRDSgrGRIVNLAS---------------------- 143
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
3BHJ_A       162 iteeelvglmnkfveDTkkgvhqkEGWPSSAYGV---TKIGVTVLSRIHARKLseqrKGDKILLNACCPGWVRTDM 234
Cdd:PRK12939 144 ---------------DT-------ALWGAPKLGAyvaSKGAVIGMTRSLAREL----GGRGITVNAIAPGLTATEA 193
FabG-like PRK07231
SDR family oxidoreductase;
5-235 3.47e-25

SDR family oxidoreductase;


Pssm-ID: 235975 [Multi-domain]  Cd Length: 251  Bit Score: 100.29  E-value: 3.47e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         5 HVALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRGQAAVQQLQAEGLSpRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:PRK07231   6 KVAIVTGASSGIGEGIARRFAA--EGaRVVVTDRNEEAAERVAAEILAGGRA-IAVAADVSDEADVEAAVAAALERFGSV 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        84 DVLVNNAGI--AFKV---ADPTPFHIQAEVTMKTNFFGTRdvctELLPLIKPQ--GRVVNVSSIMSVRAlkscSPELqqk 156
Cdd:PRK07231  83 DILVNNAGTthRNGPlldVDEAEFDRIFAVNVKSPYLWTQ----AAVPAMRGEggGAIVNVASTAGLRP----RPGL--- 151
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
3BHJ_A       157 frsetiteeelvglmnkfvedtkkgvhqkeGWpssaYGVTKIGVTVLSRIHARKLSEqrkgDKILLNACCPGWVRTDMA 235
Cdd:PRK07231 152 ------------------------------GW----YNASKGAVITLTKALAAELGP----DKIRVNAVAPVVVETGLL 192
carb_red_sniffer_like_SDR_c cd05325
carbonyl reductase sniffer-like, classical (c) SDRs; Sniffer is an NADPH-dependent carbonyl ...
7-248 3.58e-25

carbonyl reductase sniffer-like, classical (c) SDRs; Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187586 [Multi-domain]  Cd Length: 233  Bit Score: 100.06  E-value: 3.58e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        7 ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAvQQLQAEGLSPRFHQLDIDDL--QSIRALRDFLRKeyGGLD 84
Cdd:cd05325   1 VLITGASRGIGLELVRQLLARGNNTVIATCRDPSAATEL-AALGASHSRLHILELDVTDEiaESAEAVAERLGD--AGLD 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       85 VLVNNAGIA--FKVADPTPfHIQAEVTMKTNFFGTRDVCTELLPLIKP--QGRVVNVSSIMSvralkscspelqqkfrse 160
Cdd:cd05325  78 VLINNAGILhsYGPASEVD-SEDLLEVFQVNVLGPLLLTQAFLPLLLKgaRAKIINISSRVG------------------ 138
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      161 TITeeelvglmnkfveDTKKGvhqkegwPSSAYGVTKIGVTVLSrihaRKLSEQRKGDKILLNACCPGWVRTDMAGPKA- 239
Cdd:cd05325 139 SIG-------------DNTSG-------GWYSYRASKAALNMLT----KSLAVELKRDGITVVSLHPGWVRTDMGGPFAk 194
                       250
                ....*....|..
3BHJ_A      240 ---TKSPEEGAE 248
Cdd:cd05325 195 nkgPITPEESVA 206
adh_short_C2 pfam13561
Enoyl-(Acyl carrier protein) reductase; This domain is found in Enoyl-(Acyl carrier protein) ...
13-254 1.37e-24

Enoyl-(Acyl carrier protein) reductase; This domain is found in Enoyl-(Acyl carrier protein) reductases.


Pssm-ID: 433310 [Multi-domain]  Cd Length: 236  Bit Score: 98.27  E-value: 1.37e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         13 NKGIGLAIVRDLCRlfSG-DVVLTARDvTRGQAAVQQLqAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAG 91
Cdd:pfam13561   5 ESGIGWAIARALAE--EGaEVVLTDLN-EALAKRVEEL-AEELGAAVLPCDVTDEEQVEALVAAAVEKFGRLDILVNNAG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         92 IAFKVAdpTPFH-IQAE---VTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRAlkscspelqqkfrsetiteeel 167
Cdd:pfam13561  81 FAPKLK--GPFLdTSREdfdRALDVNLYSLFLLAKAALPLMKEGGSIVNLSSIGAERV---------------------- 136
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        168 vglmnkfvedtkkgvhqkegWP-SSAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTDMA-----GPKATK 241
Cdd:pfam13561 137 --------------------VPnYNAYGAAKAALEALTRYLAVELGPR----GIRVNAISPGPIKTLAAsgipgFDELLA 192
                         250       260
                  ....*....|....*....|....*
3BHJ_A        242 ------------SPEEGAETPVYLA 254
Cdd:pfam13561 193 aaearaplgrlgTPEEVANAAAFLA 217
17beta-HSD-like_SDR_c cd05374
17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs; 17beta-hydroxysteroid ...
5-140 6.52e-24

17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs; 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187632 [Multi-domain]  Cd Length: 248  Bit Score: 96.92  E-value: 6.52e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        5 HVALVTGGNKGIGLAIVRDLCRlfSGDVVL-TARDVTrgqaAVQQLQAEgLSPRFH--QLDIDDLQSIRALRDFLRKEYG 81
Cdd:cd05374   1 KVVLITGCSSGIGLALALALAA--QGYRVIaTARNPD----KLESLGEL-LNDNLEvlELDVTDEESIKAAVKEVIERFG 73
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|..
3BHJ_A       82 GLDVLVNNAGIA-FKVADPTPFHiQAEVTMKTNFFGTRDVCTELLPLIK--PQGRVVNVSSI 140
Cdd:cd05374  74 RIDVLVNNAGYGlFGPLEETSIE-EVRELFEVNVFGPLRVTRAFLPLMRkqGSGRIVNVSSV 134
PRK12826 PRK12826
SDR family oxidoreductase;
6-237 4.81e-23

SDR family oxidoreductase;


Pssm-ID: 183775 [Multi-domain]  Cd Length: 251  Bit Score: 94.60  E-value: 4.81e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK12826   8 VALVTGAARGIGRAIAVRLAA--DGaEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRLD 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        85 VLVNNAGIafkvADPTPFHI----QAEVTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMSVRAlkscspelqqkfr 158
Cdd:PRK12826  86 ILVANAGI----FPLTPFAEmddeQWERVIDVNLTGTFLLTQAALPALIRAggGRIVLTSSVAGPRV------------- 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       159 setiteeelvglmnkfvedtkkgvhqkeGWP-SSAYGVTKIGVTVLSRIHARKLSEqrkgDKILLNACCPGWVRTDMAGP 237
Cdd:PRK12826 149 ----------------------------GYPgLAHYAASKAGLVGFTRALALELAA----RNITVNSVHPGGVDTPMAGN 196
HBDH_SDR_c cd08940
d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs; DHBDH, an NAD+ -dependent enzyme, ...
6-273 6.54e-23

d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs; DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187644 [Multi-domain]  Cd Length: 258  Bit Score: 94.44  E-value: 6.54e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTA-RDVTRGQAAVQQLQAE-GLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:cd08940   4 VALVTGSTSGIGLGIARALAAA-GANIVLNGfGDAAEIEAVRAGLAAKhGVKVLYHGADLSKPAAIEDMVAYAQRQFGGV 82
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       84 DVLVNNAGIAFkVADPTPFHIQA-----EVTMKTNFFGTRDVctelLPLIKPQ--GRVVNVSSIMSvralkscspelqqk 156
Cdd:cd08940  83 DILVNNAGIQH-VAPIEDFPTEKwdaiiALNLSAVFHTTRLA----LPHMKKQgwGRIINIASVHG-------------- 143
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      157 frsetiteeeLVGLMNKfvedtkkgvhqkegwpsSAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTDM-- 234
Cdd:cd08940 144 ----------LVASANK-----------------SAYVAAKHGVVGLTKVVALETAGT----GVTCNAICPGWVLTPLve 192
                       250       260       270       280
                ....*....|....*....|....*....|....*....|...
3BHJ_A      235 ----AGPKATKSPEEGAETPVYLALLppdaegPHGQFVSEKRV 273
Cdd:cd08940 193 kqisALAQKNGVPQEQAARELLLEKQ------PSKQFVTPEQL 229
Ga5DH-like_SDR_c cd05347
gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs; Ga5DH catalyzes the NADP-dependent ...
6-248 6.57e-23

gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs; Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187605 [Multi-domain]  Cd Length: 248  Bit Score: 94.35  E-value: 6.57e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRlFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:cd05347   7 VALVTGASRGIGFGIASGLAE-AGANIVINSRNEEKAEEAQQLIEKEGVEATAFTCDVSDEEAIKAAVEAIEEDFGKIDI 85
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       86 LVNNAGIAfKVADPTPFHIQA-EVTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMSvralkscspelqqkfrseti 162
Cdd:cd05347  86 LVNNAGII-RRHPAEEFPEAEwRDVIDVNLNGVFFVSQAVARHMIKQghGKIINICSLLS-------------------- 144
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      163 teeELVGLmnkfvedtkkgvhqkegwPSSAYGVTKIGVTVLSRIHARKLSEqrkgDKILLNACCPGWVRTDMAgpKATKS 242
Cdd:cd05347 145 ---ELGGP------------------PVPAYAASKGGVAGLTKALATEWAR----HGIQVNAIAPGYFATEMT--EAVVA 197

                ....*.
3BHJ_A      243 PEEGAE 248
Cdd:cd05347 198 DPEFND 203
fabG PRK05557
3-ketoacyl-(acyl-carrier-protein) reductase; Validated
6-254 1.83e-22

3-ketoacyl-(acyl-carrier-protein) reductase; Validated


Pssm-ID: 235500 [Multi-domain]  Cd Length: 248  Bit Score: 92.95  E-value: 1.83e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK05557   7 VALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFGGVDI 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        86 LVNNAGIA-------FKVADptpFhiqaEVTMKTNFFGTRDVCTELLPLI--KPQGRVVNVSSImsvralkscspelqqk 156
Cdd:PRK05557  87 LVNNAGITrdnllmrMKEED---W----DRVIDTNLTGVFNLTKAVARPMmkQRSGRIINISSV---------------- 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       157 frsetiteeelVGLMnkfvedtkkgvhqkeGWPS-SAYGVTKIGVTVLSRIHARKLSEqrKGdkILLNACCPGWVRTDM- 234
Cdd:PRK05557 144 -----------VGLM---------------GNPGqANYAASKAGVIGFTKSLARELAS--RG--ITVNAVAPGFIETDMt 193
                        250       260       270
                 ....*....|....*....|....*....|....
3BHJ_A       235 -AGPKATK-------------SPEEGAETPVYLA 254
Cdd:PRK05557 194 dALPEDVKeailaqiplgrlgQPEEIASAVAFLA 227
BKR_1_SDR_c cd05337
putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) ...
6-237 2.12e-22

putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR; This subgroup includes Escherichia coli CFT073 FabG. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187596 [Multi-domain]  Cd Length: 255  Bit Score: 92.91  E-value: 2.12e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRlfSGDVVLTARDVTRGQAA--VQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:cd05337   3 VAIVTGASRGIGRAIATELAA--RGFDIAINDLPDDDQATevVAEVLAAGRRAIYFQADIGELSDHEALLDQAWEDFGRL 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       84 DVLVNNAGIAFKV------ADPTPFHIQAEVTMKTNFFGTRDVCTELL----PLIKPQGRVVNVSSIMSVRAlkscSPEl 153
Cdd:cd05337  81 DCLVNNAGIAVRPrgdlldLTEDSFDRLIAINLRGPFFLTQAVARRMVeqpdRFDGPHRSIIFVTSINAYLV----SPN- 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      154 qqkfRSEtiteeelvglmnkfvedtkkgvhqkegwpssaYGVTKIGVTVLSRIHARKLSEqrkgDKILLNACCPGWVRTD 233
Cdd:cd05337 156 ----RGE--------------------------------YCISKAGLSMATRLLAYRLAD----EGIAVHEIRPGLIHTD 195

                ....
3BHJ_A      234 MAGP 237
Cdd:cd05337 196 MTAP 199
SDR_c2 cd05370
classical (c) SDR, subgroup 2; Short-chain dehydrogenases/reductases (SDRs, aka ...
7-141 3.46e-22

classical (c) SDR, subgroup 2; Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187628 [Multi-domain]  Cd Length: 228  Bit Score: 91.98  E-value: 3.46e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        7 ALVTGGNKGIGLAIVRDLCRLFSgDVVLTARDvtrgQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVL 86
Cdd:cd05370   8 VLITGGTSGIGLALARKFLEAGN-TVIITGRR----EERLAEAKKELPNIHTIVLDVGDAESVEALAEALLSEYPNLDIL 82
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*....
3BHJ_A       87 VNNAGIA--FKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIK--PQGRVVNVSSIM 141
Cdd:cd05370  83 INNAGIQrpIDLRDPASDLDKADTEIDTNLIGPIRLIKAFLPHLKkqPEATIVNVSSGL 141
PRK12937 PRK12937
short chain dehydrogenase; Provisional
6-269 4.04e-22

short chain dehydrogenase; Provisional


Pssm-ID: 171821 [Multi-domain]  Cd Length: 245  Bit Score: 92.11  E-value: 4.04e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLT-ARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:PRK12937   7 VAIVTGASRGIGAAIARRLAA--DGfAVAVNyAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFGRI 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        84 DVLVNNAGIAF--KVADptpFHIQA-EVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSimSVRALKscspelqqkfrse 160
Cdd:PRK12937  85 DVLVNNAGVMPlgTIAD---FDLEDfDRTIATNLRGAFVVLREAARHLGQGGRIINLST--SVIALP------------- 146
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       161 titeeelvglmnkfvedtkkgvhqkegWPS-SAYGVTKIGVTVLSRIHARKLseqrKGDKILLNACCPGWVRTDM----- 234
Cdd:PRK12937 147 ---------------------------LPGyGPYAASKAAVEGLVHVLANEL----RGRGITVNAVAPGPVATELffngk 195
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
3BHJ_A       235 AGPKATK-----------SPEEGAETPVYLAllppdaeGPHGQFVS 269
Cdd:PRK12937 196 SAEQIDQlaglaplerlgTPEEIAAAVAFLA-------GPDGAWVN 234
SDR_c7 cd05354
classical (c) SDR, subgroup 7; These proteins are members of the classical SDR family, with a ...
6-169 1.14e-21

classical (c) SDR, subgroup 7; These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187612 [Multi-domain]  Cd Length: 235  Bit Score: 90.54  E-value: 1.14e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDvtrgQAAVQQLQAEGLSpRFH--QLDIDDLQSIRALRDFLRKeyggL 83
Cdd:cd05354   5 TVLVTGANRGIGKAFVESLLAHGAKKVYAAVRD----PGSAAHLVAKYGD-KVVplRLDVTDPESIKAAAAQAKD----V 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       84 DVLVNNAGIaFKVADPTP--FHIQAEVTMKTNFFGTRDVCTELLPLIK--PQGRVVNVSSIMSVRALKSCSPELQQKFRS 159
Cdd:cd05354  76 DVVINNAGV-LKPATLLEegALEALKQEMDVNVFGLLRLAQAFAPVLKanGGGAIVNLNSVASLKNFPAMGTYSASKSAA 154
                       170
                ....*....|...
3BHJ_A      160 ETITE---EELVG 169
Cdd:cd05354 155 YSLTQglrAELAA 167
3beta-17beta-HSD_like_SDR_c cd05341
3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs; This subgroup includes ...
6-250 2.25e-21

3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs; This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187600 [Multi-domain]  Cd Length: 247  Bit Score: 90.13  E-value: 2.25e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLqaeGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:cd05341   7 VAIVTGGARGLGLAHARLLVAE-GAKVVLSDILDEEGQAAAAEL---GDAARFFHLDVTDEDGWTAVVDTAREAFGRLDV 82
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       86 LVNNAGIAfkvadpTPFHIQAEV------TMKTN----FFGTRDVctelLPLIKPQGR--VVNVSSImsvralkscspel 153
Cdd:cd05341  83 LVNNAGIL------TGGTVETTTleewrrLLDINltgvFLGTRAV----IPPMKEAGGgsIINMSSI------------- 139
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      154 qqkfrsetiteEELVGLMNkfvedtkkgvhqkegwpSSAYGVTKIGVTVLSRIHARKLSEQrkGDKILLNACCPGWVRTD 233
Cdd:cd05341 140 -----------EGLVGDPA-----------------LAAYNASKGAVRGLTKSAALECATQ--GYGIRVNSVHPGYIYTP 189
                       250
                ....*....|....*....
3BHJ_A      234 M--AGPKATKSPEEGAETP 250
Cdd:cd05341 190 MtdELLIAQGEMGNYPNTP 208
fabG PRK12825
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
6-254 2.70e-21

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 237218 [Multi-domain]  Cd Length: 249  Bit Score: 89.93  E-value: 2.70e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTAR-DVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:PRK12825   8 VALVTGAARGLGRAIALRLAR--AGaDVVVHYRsDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFGRI 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        84 DVLVNNAGIAF--KVADPTP--FHIQAEVTMKTNFFGTRDVcteLLPLIKPQ-GRVVNVSsimSVRALKscspelqqkfr 158
Cdd:PRK12825  86 DILVNNAGIFEdkPLADMSDdeWDEVIDVNLSGVFHLLRAV---VPPMRKQRgGRIVNIS---SVAGLP----------- 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       159 setiteeelvglmnkfvedtkkgvhqkeGWP-SSAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTDM--- 234
Cdd:PRK12825 149 ----------------------------GWPgRSNYAAAKAGLVGLTKALARELAEY----GITVNMVAPGDIDTDMkea 196
                        250       260       270
                 ....*....|....*....|....*....|....
3BHJ_A       235 --------------AGPKATksPEEGAETPVYLA 254
Cdd:PRK12825 197 tieeareakdaetpLGRSGT--PEDIARAVAFLC 228
HetN_like_SDR_c cd08932
HetN oxidoreductase-like, classical (c) SDR; This subgroup includes Anabaena sp. strain PCC ...
6-235 8.24e-21

HetN oxidoreductase-like, classical (c) SDR; This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212493 [Multi-domain]  Cd Length: 223  Bit Score: 87.80  E-value: 8.24e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDvtrgQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:cd08932   2 VALVTGASRGIGIEIARALARD-GYRVSLGLRN----PEDLAALSASGGDVEAVPYDARDPEDARALVDALRDRFGRIDV 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       86 LVNNAGIAFK--VADPTPFHIQAevTMKTNFFGTRDVCTELLPLI--KPQGRVVNVSSIMSVRALKScspelqqkfrset 161
Cdd:cd08932  77 LVHNAGIGRPttLREGSDAELEA--HFSINVIAPAELTRALLPALreAGSGRVVFLNSLSGKRVLAG------------- 141
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
3BHJ_A      162 iteeelvglmnkfvedtkkgvhqkegwpSSAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTDMA 235
Cdd:cd08932 142 ----------------------------NAGYSASKFALRALAHALRQEGWDH----GVRVSAVCPGFVDTPMA 183
BKR_SDR_c cd05333
beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; ...
6-234 1.11e-20

beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187594 [Multi-domain]  Cd Length: 240  Bit Score: 87.99  E-value: 1.11e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:cd05333   2 VALVTGASRGIGRAIALRLAA--EGaKVAVTDRSEEAAAETVEEIKALGGNAAALEADVSDREAVEALVEKVEAEFGPVD 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       85 VLVNNAGI-------AFKVADptpfhiqAEVTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSImsvralkscspelqq 155
Cdd:cd05333  80 ILVNNAGItrdnllmRMSEED-------WDAVINVNLTGVFNVTQAVIRAMIKRrsGRIINISSV--------------- 137
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      156 kfrsetiteeelVGLMnkfvedtkkgvhqkeGWPSSA-YGVTKIGVTVLSRIHARKLSeqRKGdkILLNACCPGWVRTDM 234
Cdd:cd05333 138 ------------VGLI---------------GNPGQAnYAASKAGVIGFTKSLAKELA--SRG--ITVNAVAPGFIDTDM 186
PRK06484 PRK06484
short chain dehydrogenase; Validated
6-254 1.41e-20

short chain dehydrogenase; Validated


Pssm-ID: 168574 [Multi-domain]  Cd Length: 520  Bit Score: 91.06  E-value: 1.41e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSGDVVLTA-RDVTRGQAAVQQLqaeGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK06484   7 VVLVTGAAGGIGRAACQRFAR--AGDQVVVAdRNVERARERADSL---GPDHHALAMDVSDEAQIREGFEQLHREFGRID 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        85 VLVNNAGI----AFKVADPTPFHIQAevTMKTNFFGTRDVCTELLPLIKPQGR---VVNVSSIMSVRALKScspelqqkf 157
Cdd:PRK06484  82 VLVNNAGVtdptMTATLDTTLEEFAR--LQAINLTGAYLVAREALRLMIEQGHgaaIVNVASGAGLVALPK--------- 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       158 rsetiteeelvglmnkfvedtkkgvhqkegwpSSAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTDM--- 234
Cdd:PRK06484 151 --------------------------------RTAYSASKAAVISLTRSLACEWAAK----GIRVNAVLPGYVRTQMvae 194
                        250       260       270
                 ....*....|....*....|....*....|....*
3BHJ_A       235 ---AG---PKATKS---------PEEGAETPVYLA 254
Cdd:PRK06484 195 lerAGkldPSAVRSriplgrlgrPEEIAEAVFFLA 229
PRK09242 PRK09242
SDR family oxidoreductase;
7-237 3.23e-20

SDR family oxidoreductase;


Pssm-ID: 181721 [Multi-domain]  Cd Length: 257  Bit Score: 87.11  E-value: 3.23e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQL--DIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK09242  12 ALITGASKGIGLAIAREFLGL-GADVLIVARDADALAQARDELAEEFPEREVHGLaaDVSDDEDRRAILDWVEDHWDGLH 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        85 VLVNNAG--IAFKVADPTPFHIQAevTMKTNFFGTRDVCTELLPLIKPQG--RVVNVSSIMSVRALKSCSPelqqkfrse 160
Cdd:PRK09242  91 ILVNNAGgnIRKAAIDYTEDEWRG--IFETNLFSAFELSRYAHPLLKQHAssAIVNIGSVSGLTHVRSGAP--------- 159
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
3BHJ_A       161 titeeelvglmnkfvedtkkgvhqkegwpssaYGVTKIGVTVLSrihaRKLSEQRKGDKILLNACCPGWVRTDMAGP 237
Cdd:PRK09242 160 --------------------------------YGMTKAALLQMT----RNLAVEWAEDGIRVNAVAPWYIRTPLTSG 200
PRK12745 PRK12745
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
6-241 4.17e-20

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 237188 [Multi-domain]  Cd Length: 256  Bit Score: 86.94  E-value: 4.17e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTA-RDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:PRK12745   4 VALVTGGRRGIGLGIARALAA--AGfDLAINDrPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRI 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        84 DVLVNNAGIAFKV------ADPTPFHIQAEVTMKTNFFGTRDVCTELL----PLIKPQGRVVNVSSIMSVRAlkscSPEl 153
Cdd:PRK12745  82 DCLVNNAGVGVKVrgdlldLTPESFDRVLAINLRGPFFLTQAVAKRMLaqpePEELPHRSIVFVSSVNAIMV----SPN- 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       154 qqkfRSEtiteeelvglmnkfvedtkkgvhqkegwpssaYGVTKIGVTVLSRIHARKLSEQRkgdkILLNACCPGWVRTD 233
Cdd:PRK12745 157 ----RGE--------------------------------YCISKAGLSMAAQLFAARLAEEG----IGVYEVRPGLIKTD 196

                 ....*...
3BHJ_A       234 MAGPKATK 241
Cdd:PRK12745 197 MTAPVTAK 204
PRK06914 PRK06914
SDR family oxidoreductase;
6-164 8.21e-20

SDR family oxidoreductase;


Pssm-ID: 180744 [Multi-domain]  Cd Length: 280  Bit Score: 86.62  E-value: 8.21e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFH--QLDIDDLQSIRALRDFLrKEYGGL 83
Cdd:PRK06914   5 IAIVTGASSGFGLLTTLELAKK-GYLVIATMRNPEKQENLLSQATQLNLQQNIKvqQLDVTDQNSIHNFQLVL-KEIGRI 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        84 DVLVNNAGIAFK-VADPTP---FHIQAEvtmkTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMSVRALKSCSPELQQKF 157
Cdd:PRK06914  83 DLLVNNAGYANGgFVEEIPveeYRKQFE----TNVFGAISVTQAVLPYMRKQksGKIINISSISGRVGFPGLSPYVSSKY 158

                 ....*..
3BHJ_A       158 RSETITE 164
Cdd:PRK06914 159 ALEGFSE 165
BKR_like_SDR_like cd05344
putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR; This subgroup ...
6-233 1.18e-19

putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR; This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187602 [Multi-domain]  Cd Length: 253  Bit Score: 85.40  E-value: 1.18e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLFSgDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:cd05344   3 VALVTAASSGIGLAIARALAREGA-RVAICARNRENLERAASELRAGGAGVLAVVADLTDPEDIDRLVEKAGDAFGRVDI 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       86 LVNNAGiafkVADPTPFhiqAEVT-------MKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSiMSVRAlkscsPElqqk 156
Cdd:cd05344  82 LVNNAG----GPPPGPF---AELTdedwleaFDLKLLSVIRIVRAVLPGMKERgwGRIVNISS-LTVKE-----PE---- 144
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
3BHJ_A      157 frsetiteeelvglmnkfvedtkkgvhqkEGWPSSayGVTKIGVTVLSRIHARKLSEqrkgDKILLNACCPGWVRTD 233
Cdd:cd05344 145 -----------------------------PNLVLS--NVARAGLIGLVKTLSRELAP----DGVTVNSVLPGYIDTE 186
PRK08264 PRK08264
SDR family oxidoreductase;
6-142 1.23e-19

SDR family oxidoreductase;


Pssm-ID: 181335 [Multi-domain]  Cd Length: 238  Bit Score: 84.94  E-value: 1.23e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARD---VTRGQAAVQQLqaeglsprfhQLDIDDLQSIRALRDFLrkeyGG 82
Cdd:PRK08264   8 VVLVTGANRGIGRAFVEQLLARGAAKVYAAARDpesVTDLGPRVVPL----------QLDVTDPASVAAAAEAA----SD 73
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
3BHJ_A        83 LDVLVNNAGIAFK---VADPTPFHIQAEvtMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMS 142
Cdd:PRK08264  74 VTILVNNAGIFRTgslLLEGDEDALRAE--METNYFGPLAMARAFAPVLAANggGAIVNVLSVLS 136
SPR-like_SDR_c cd05367
sepiapterin reductase (SPR)-like, classical (c) SDRs; Human SPR, a member of the SDR family, ...
6-150 1.27e-19

sepiapterin reductase (SPR)-like, classical (c) SDRs; Human SPR, a member of the SDR family, catalyzes the NADP-dependent reduction of sepiaptern to 7,8-dihydrobiopterin (BH2). In addition to SPRs, this subgroup also contains Bacillus cereus yueD, a benzil reductase, which catalyzes the stereospecific reduction of benzil to (S)-benzoin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187625 [Multi-domain]  Cd Length: 241  Bit Score: 85.03  E-value: 1.27e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTardVTRGQAAVQQLQAE---GLSPRFHQLDIDDLQSIRALRDFLRKEYGG 82
Cdd:cd05367   1 VIILTGASRGIGRALAEELLKRGSPSVVVL---LARSEEPLQELKEElrpGLRVTTVKADLSDAAGVEQLLEAIRKLDGE 77
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
3BHJ_A       83 LDVLVNNAGIAFKVADPTPFHIQAEVT-MKTNFFGTrdVCT-----ELLPLIKPQGRVVNVSSIMSVRALKSCS 150
Cdd:cd05367  78 RDLLINNAGSLGPVSKIEFIDLDELQKyFDLNLTSP--VCLtstllRAFKKRGLKKTVVNVSSGAAVNPFKGWG 149
TR_SDR_c cd05329
tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs; This subgroup ...
7-159 1.54e-19

tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs; This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187590 [Multi-domain]  Cd Length: 251  Bit Score: 85.19  E-value: 1.54e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        7 ALVTGGNKGIGLAIVRDLCRlFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG-LDV 85
Cdd:cd05329   9 ALVTGGTKGIGYAIVEELAG-LGAEVYTCARNQKELDECLTEWREKGFKVEGSVCDVSSRSERQELMDTVASHFGGkLNI 87
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       86 LVNNAG--IAFKVADPTPFHIQAevTMKTNFFGTRDVCTELLPLIKPQGR--VVNVSSIMSVRALKSCSP------ELQQ 155
Cdd:cd05329  88 LVNNAGtnIRKEAKDYTEEDYSL--IMSTNFEAAYHLSRLAHPLLKASGNgnIVFISSVAGVIAVPSGAPygatkgALNQ 165

                ....
3BHJ_A      156 KFRS 159
Cdd:cd05329 166 LTRS 169
THN_reductase-like_SDR_c cd05362
tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs; 1,3,6, ...
6-234 1.59e-19

tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs; 1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187620 [Multi-domain]  Cd Length: 243  Bit Score: 85.02  E-value: 1.59e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:cd05362   5 VALVTGASRGIGRAIAKRLARDGASVVVNYASSKAAAEEVVAEIEAAGGKAIAVQADVSDPSQVARLFDAAEKAFGGVDI 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       86 LVNNAGIAFK--VADPTP--FHIQAEVTMKTNFFGTRdvctELLPLIKPQGRVVNVSSImsvrALKSCSPElqqkfrset 161
Cdd:cd05362  85 LVNNAGVMLKkpIAETSEeeFDRMFTVNTKGAFFVLQ----EAAKRLRDGGRIINISSS----LTAAYTPN--------- 147
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
3BHJ_A      162 iteeelvglmnkfvedtkkgvhqkegwpSSAYGVTKIGVTVLSRIHARKLseqrKGDKILLNACCPGWVRTDM 234
Cdd:cd05362 148 ----------------------------YGAYAGSKAAVEAFTRVLAKEL----GGRGITVNAVAPGPVDTDM 188
PRK07201 PRK07201
SDR family oxidoreductase;
3-140 1.04e-18

SDR family oxidoreductase;


Pssm-ID: 235962 [Multi-domain]  Cd Length: 657  Bit Score: 85.39  E-value: 1.04e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         3 GIHVaLVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 82
Cdd:PRK07201 371 GKVV-LITGASSGIGRATAIKVAEA-GATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHGH 448
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
3BHJ_A        83 LDVLVNNAG--IAFKVADPTP-FHiQAEVTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSI 140
Cdd:PRK07201 449 VDYLVNNAGrsIRRSVENSTDrFH-DYERTMAVNYFGAVRLILGLLPHMRERrfGHVVNVSSI 510
PRK12429 PRK12429
3-hydroxybutyrate dehydrogenase; Provisional
6-232 1.09e-18

3-hydroxybutyrate dehydrogenase; Provisional


Pssm-ID: 237100 [Multi-domain]  Cd Length: 258  Bit Score: 83.01  E-value: 1.09e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK12429   6 VALVTGAASGIGLEIALALAKE-GAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGVDI 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        86 LVNNAGI-------AFKVADptpFHIQAEVTMKTNFFGTRDVctelLPLIKPQ--GRVVNVSSIMSVRALKSCSPELQQK 156
Cdd:PRK12429  85 LVNNAGIqhvapieDFPTEK---WKKMIAIMLDGAFLTTKAA----LPIMKAQggGRIINMASVHGLVGSAGKAAYVSAK 157
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
3BHJ_A       157 frsetiteEELVGLmnkfvedTKkgVHQKEGWPSsaygvtkiGVTVlsriharklseqrkgdkillNACCPGWVRT 232
Cdd:PRK12429 158 --------HGLIGL-------TK--VVALEGATH--------GVTV--------------------NAICPGYVDT 188
PRK07326 PRK07326
SDR family oxidoreductase;
6-140 2.01e-18

SDR family oxidoreductase;


Pssm-ID: 235990 [Multi-domain]  Cd Length: 237  Bit Score: 81.98  E-value: 2.01e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRGQAAVQQLQAEGlspRFHQL--DIDDLQSIRALRDFLRKEYGG 82
Cdd:PRK07326   8 VALITGGSKGIGFAIAEALLA--EGyKVAITARDQKELEEAAAELNNKG---NVLGLaaDVRDEADVQRAVDAIVAAFGG 82
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
3BHJ_A        83 LDVLVNNAGIA-FK-VADPTPFHIQAevTMKTNFFGTRDVCTELLP-LIKPQGRVVNVSSI 140
Cdd:PRK07326  83 LDVLIANAGVGhFApVEELTPEEWRL--VIDTNLTGAFYTIKAAVPaLKRGGGYIINISSL 141
3oxo_ACP_reduc TIGR01830
3-oxoacyl-(acyl-carrier-protein) reductase; This model represents 3-oxoacyl-[ACP] reductase, ...
7-234 2.07e-18

3-oxoacyl-(acyl-carrier-protein) reductase; This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. [Fatty acid and phospholipid metabolism, Biosynthesis]


Pssm-ID: 273824 [Multi-domain]  Cd Length: 239  Bit Score: 81.87  E-value: 2.07e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A          7 ALVTGGNKGIGLAIVRDLCRLFSgDVVLT-ARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:TIGR01830   1 ALVTGASRGIGRAIALKLAKEGA-KVIITyRSSEEGAEEVVEELKALGVKALGVVLDVSDREDVKAVVEEIEEELGTIDI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         86 LVNNAGI-----AFKVADPtpfhiQAEVTMKTNFFGTRDVCTELL-PLIKP-QGRVVNVSSImsvralkscspelqqkfr 158
Cdd:TIGR01830  80 LVNNAGItrdnlLMRMKEE-----DWDAVIDTNLTGVFNLTQAVLrIMIKQrSGRIINISSV------------------ 136
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
3BHJ_A        159 setiteeelVGLMnkfvedtkkgvhqkeGWPSSA-YGVTKIGVTVLSRIHARKLSeqRKGdkILLNACCPGWVRTDM 234
Cdd:TIGR01830 137 ---------VGLM---------------GNAGQAnYAASKAGVIGFTKSLAKELA--SRN--ITVNAVAPGFIDTDM 185
ChcA_like_SDR_c cd05359
1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs; This subgroup ...
7-259 2.50e-18

1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs; This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187617 [Multi-domain]  Cd Length: 242  Bit Score: 81.63  E-value: 2.50e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        7 ALVTGGNKGIGLAIVRDLCRLfSGDVVLT-ARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:cd05359   1 ALVTGGSRGIGKAIALRLAER-GADVVINyRKSKDAAAEVAAEIEELGGKAVVVRADVSQPQDVEEMFAAVKERFGRLDV 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       86 LVNNAGI-AFK-VADPTPFHIQAEVTM--KTNFFGTRDVcTELLPLIKpQGRVVNVSSIMSVRALkscspelqqkfrset 161
Cdd:cd05359  80 LVSNAAAgAFRpLSELTPAHWDAKMNTnlKALVHCAQQA-AKLMRERG-GGRIVAISSLGSIRAL--------------- 142
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      162 iteeelvglmnkfvedtkkgvhqkEGWpsSAYGVTKIGVTVLSRIHARKLSeqRKGdkILLNACCPGWVRTDMAG--PKA 239
Cdd:cd05359 143 ------------------------PNY--LAVGTAKAALEALVRYLAVELG--PRG--IRVNAVSPGVIDTDALAhfPNR 192
                       250       260
                ....*....|....*....|.
3BHJ_A      240 TKSPEEGAE-TPVYLALLPPD 259
Cdd:cd05359 193 EDLLEAAAAnTPAGRVGTPQD 213
SDR_c4 cd08929
classical (c) SDR, subgroup 4; This subgroup has a canonical active site tetrad and a typical ...
7-147 3.59e-18

classical (c) SDR, subgroup 4; This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187634 [Multi-domain]  Cd Length: 226  Bit Score: 81.01  E-value: 3.59e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        7 ALVTGGNKGIGLAIVRDLCRLFSGdVVLTARDVTRGQAAVQQLQaeglsPRFHQL--DIDDLQSIRALRDFLRKEYGGLD 84
Cdd:cd08929   3 ALVTGASRGIGEATARLLHAEGYR-VGICARDEARLAAAAAQEL-----EGVLGLagDVRDEADVRRAVDAMEEAFGGLD 76
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
3BHJ_A       85 VLVNNAGIAF--KVADPTPFHIQAEV--TMKTNFFGTRDVCTELLPliKPQGRVVNVSSIMSVRALK 147
Cdd:cd08929  77 ALVNNAGVGVmkPVEELTPEEWRLVLdtNLTGAFYCIHKAAPALLR--RGGGTIVNVGSLAGKNAFK 141
PRK06181 PRK06181
SDR family oxidoreductase;
6-140 4.85e-18

SDR family oxidoreductase;


Pssm-ID: 235726 [Multi-domain]  Cd Length: 263  Bit Score: 81.18  E-value: 4.85e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDL----CRLfsgdvVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 81
Cdd:PRK06181   3 VVIITGASEGIGRALAVRLaragAQL-----VLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFG 77
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
3BHJ_A        82 GLDVLVNNAGI----AF-KVADPTPFhiqaEVTMKTNFFGTRdVCTEL-LP-LIKPQGRVVNVSSI 140
Cdd:PRK06181  78 GIDILVNNAGItmwsRFdELTDLSVF----ERVMRVNYLGAV-YCTHAaLPhLKASRGQIVVVSSL 138
PRK06138 PRK06138
SDR family oxidoreductase;
6-254 1.31e-17

SDR family oxidoreductase;


Pssm-ID: 235712 [Multi-domain]  Cd Length: 252  Bit Score: 79.81  E-value: 1.31e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRdlcrLFSGD---VVLTARDVTrGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 82
Cdd:PRK06138   7 VAIVTGAGSGIGRATAK----LFAREgarVVVADRDAE-AAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        83 LDVLVNNAG--IAFKVADPTPFHIQAevTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMSVRALKScspelqqkfr 158
Cdd:PRK06138  82 LDVLVNNAGfgCGGTVVTTDEADWDA--VMRVNVGGVFLWAKYAIPIMQRQggGSIVNTASQLALAGGRG---------- 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       159 setiteeelvglmnkfvedtkkgvhqkegwpSSAYGVTKIGVTVLSRIHARKLSEqrkgDKILLNACCPGWVRTDM---- 234
Cdd:PRK06138 150 -------------------------------RAAYVASKGAIASLTRAMALDHAT----DGIRVNAVAPGTIDTPYfrri 194
                        250       260       270
                 ....*....|....*....|....*....|....*..
3BHJ_A       235 ----AGPKATKS-------------PEEGAETPVYLA 254
Cdd:PRK06138 195 farhADPEALREalrarhpmnrfgtAEEVAQAALFLA 231
KDSR-like_SDR_c cd08939
3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR; These ...
6-139 1.32e-17

3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR; These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187643 [Multi-domain]  Cd Length: 239  Bit Score: 79.60  E-value: 1.32e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSP----RFHQLDIDDLQSIRALRDFLRKEYG 81
Cdd:cd08939   3 HVLITGGSSGIGKALAKELVKE-GANVIIVARSESKLEEAVEEIEAEANASgqkvSYISADLSDYEEVEQAFAQAVEKGG 81
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
3BHJ_A       82 GLDVLVNNAGIA----FKVADPTPFHIQaevtMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSS 139
Cdd:cd08939  82 PPDLVVNCAGISipglFEDLTAEEFERG----MDVNYFGSLNVAHAVLPLMKEQrpGHIVFVSS 141
SDR_c12 cd08944
classical (c) SDR, subgroup 12; These are classical SDRs, with the canonical active site ...
6-234 1.83e-17

classical (c) SDR, subgroup 12; These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187648 [Multi-domain]  Cd Length: 246  Bit Score: 79.46  E-value: 1.83e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRfhqLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:cd08944   5 VAIVTGAGAGIGAACAARLARE-GARVVVADIDGGAAQAVVAQIAGGALALR---VDVTDEQQVAALFERAVEEFGGLDL 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       86 LVNNAGIAfkVADPTPFHIQAEV---TMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMSVRAlkscspelqqkfrse 160
Cdd:cd08944  81 LVNNAGAM--HLTPAIIDTDLAVwdqTMAINLRGTFLCCRHAAPRMIARggGSIVNLSSIAGQSG--------------- 143
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
3BHJ_A      161 titeeelVGLmnkfvedtkkgvhqkegwpSSAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTDM 234
Cdd:cd08944 144 -------DPG-------------------YGAYGASKAAIRNLTRTLAAELRHA----GIRCNALAPGLIDTPL 187
DHRS1_HSDL2-like_SDR_c cd05338
human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid ...
6-268 1.98e-17

human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs; This subgroup includes human DHRS1 and human HSDL2 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187597 [Multi-domain]  Cd Length: 246  Bit Score: 79.36  E-value: 1.98e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRG------------QAAVQQLQAEGLSPRFHQLDIDDLQSIRALR 73
Cdd:cd05338   5 VAFVTGASRGIGRAIALRLAKA-GATVVVAAKTASEGdngsakslpgtiEETAEEIEAAGGQALPIVVDVRDEDQVRALV 83
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       74 DFLRKEYGGLDVLVNNAGIAF--KVADpTPFHiQAEVTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMSVRAlksc 149
Cdd:cd05338  84 EATVDQFGRLDILVNNAGAIWlsLVED-TPAK-RFDLMQRVNLRGTYLLSQAALPHMVKAgqGHILNISPPLSLRP---- 157
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      150 spelqqkfrsetiteeelvglmnkfvedtkkgvhqkeGWPSSAYGVTKIGVTVLsrihARKLSEQRKGDKILLNACCPG- 228
Cdd:cd05338 158 -------------------------------------ARGDVAYAAGKAGMSRL----TLGLAAELRRHGIAVNSLWPSt 196
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*..
3BHJ_A      229 ----WVRTDMAGPK---ATKSPEEGAETpvYLALLPPDAEGPHGQFV 268
Cdd:cd05338 197 aietPAATELSGGSdpaRARSPEILSDA--VLAILSRPAAERTGLVV 241
PRK06124 PRK06124
SDR family oxidoreductase;
6-140 2.45e-17

SDR family oxidoreductase;


Pssm-ID: 235702 [Multi-domain]  Cd Length: 256  Bit Score: 79.37  E-value: 2.45e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK06124  13 VALVTGSARGLGFEIARALAG--AGaHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGRLD 90
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        85 VLVNNAGIAFK--VADPTPFHIQAevTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSI 140
Cdd:PRK06124  91 ILVNNVGARDRrpLAELDDAAIRA--LLETDLVAPILLSRLAAQRMKRQgyGRIIAITSI 148
11beta-HSD1_like_SDR_c cd05332
11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs; Human ...
6-141 3.02e-17

11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs; Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187593 [Multi-domain]  Cd Length: 257  Bit Score: 78.78  E-value: 3.02e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLfsG-DVVLTARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:cd05332   5 VVIITGASSGIGEELAYHLARL--GaRLVLSARREERLEEVKSECLELGaPSPHVVPLDMSDLEDAEQVVEEALKLFGGL 82
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
3BHJ_A       84 DVLVNNAGIA-FKVADPTPFHIQAEVtMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIM 141
Cdd:cd05332  83 DILINNAGISmRSLFHDTSIDVDRKI-MEVNYFGPVALTKAALPHLIERsqGSIVVVSSIA 142
retinol-DH_like_SDR_c cd09807
retinol dehydrogenases (retinol-DHs), classical (c) SDRs; Classical SDR-like subgroup ...
6-275 3.60e-17

retinol dehydrogenases (retinol-DHs), classical (c) SDRs; Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212495 [Multi-domain]  Cd Length: 274  Bit Score: 79.05  E-value: 3.60e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRF--HQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:cd09807   3 TVIITGANTGIGKETARELARR-GARVIMACRDMAKCEEAAAEIRRDTLNHEVivRHLDLASLKSIRAFAAEFLAEEDRL 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       84 DVLVNNAGIA----FKVADptPFHIQAEVTMKTNFFGTrdvcTELLPLIKPQG--RVVNVSSIMSVRA------LKScsp 151
Cdd:cd09807  82 DVLINNAGVMrcpySKTED--GFEMQFGVNHLGHFLLT----NLLLDLLKKSApsRIVNVSSLAHKAGkinfddLNS--- 152
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      152 elQQKFrsetiteeelvglmnkfveDTKKgvhqkegwpssAYGVTKIGVTVLSRIHARKLseqrKGDKILLNACCPGWVR 231
Cdd:cd09807 153 --EKSY-------------------NTGF-----------AYCQSKLANVLFTRELARRL----QGTGVTVNALHPGVVR 196
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|.
3BHJ_A      232 TD------MAGPKAT-----------KSPEEGAETPVYLAlLPPDAEGPHGQFVSEKRVEQ 275
Cdd:cd09807 197 TElgrhtgIHHLFLStllnplfwpfvKTPREGAQTSIYLA-LAEELEGVSGKYFSDCKLKE 256
CAD_SDR_c cd08934
clavulanic acid dehydrogenase (CAD), classical (c) SDR; CAD catalyzes the NADP-dependent ...
5-145 7.32e-17

clavulanic acid dehydrogenase (CAD), classical (c) SDR; CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187639 [Multi-domain]  Cd Length: 243  Bit Score: 77.58  E-value: 7.32e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        5 HVALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:cd08934   4 KVALVTGASSGIGEATARALAAE-GAAVAIAARRVDRLEALADELEAEGGKALVLELDVTDEQQVDAAVERTVEALGRLD 82
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
3BHJ_A       85 VLVNNAGI----AFKVADPTPFhiqaEVTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMSVRA 145
Cdd:cd08934  83 ILVNNAGImllgPVEDADTTDW----TRMIDTNLLGLMYTTHAALPHHLLRnkGTIVNISSVAGRVA 145
PRK07454 PRK07454
SDR family oxidoreductase;
7-260 9.76e-17

SDR family oxidoreductase;


Pssm-ID: 180984 [Multi-domain]  Cd Length: 241  Bit Score: 77.31  E-value: 9.76e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK07454   9 ALITGASSGIGKATALAFAK--AGwDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCPDV 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        86 LVNNAGIAFK--VADpTPFHiQAEVTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMSVRALkscsPelqqkfrset 161
Cdd:PRK07454  87 LINNAGMAYTgpLLE-MPLS-DWQWVIQLNLTSVFQCCSAVLPGMRARggGLIINVSSIAARNAF----P---------- 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       162 iteeelvglmnkfvedtkkgvhqkeGWpsSAYGVTKIGVTVLSRIharkLSEQRKGDKILLNACCPGWVRT-----DMAG 236
Cdd:PRK07454 151 -------------------------QW--GAYCVSKAALAAFTKC----LAEEERSHGIRVCTITLGAVNTplwdtETVQ 199
                        250       260
                 ....*....|....*....|....*...
3BHJ_A       237 P----KATKSPEEGAETPVYLALLPPDA 260
Cdd:PRK07454 200 AdfdrSAMLSPEQVAQTILHLAQLPPSA 227
fabG PRK06463
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
6-245 1.17e-16

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 180576 [Multi-domain]  Cd Length: 255  Bit Score: 77.52  E-value: 1.17e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDvtrgQAAVQQLQAEGLSprFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK06463   9 VALITGGTRGIGRAIAEAFLREGAKVAVLYNSA----ENEAKELREKGVF--TIKCDVGNRDQVKKSKEVVEKEFGRVDV 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        86 LVNNAGIAFKVadptPF----HIQAEVTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSimsvralkscspelqqkfrs 159
Cdd:PRK06463  83 LVNNAGIMYLM----PFeefdEEKYNKMIKINLNGAIYTTYEFLPLLKLSknGAIVNIAS-------------------- 138
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       160 etiteeelvglmNKFVEDTKKGvhqkegwpSSAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTDMAgpKA 239
Cdd:PRK06463 139 ------------NAGIGTAAEG--------TTFYAITKAGIIILTRRLAFELGKY----GIRVNAVAPGWVETDMT--LS 192

                 ....*.
3BHJ_A       240 TKSPEE 245
Cdd:PRK06463 193 GKSQEE 198
PRK07774 PRK07774
SDR family oxidoreductase;
6-245 1.39e-16

SDR family oxidoreductase;


Pssm-ID: 236094 [Multi-domain]  Cd Length: 250  Bit Score: 77.09  E-value: 1.39e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK07774   8 VAIVTGAAGGIGQAYAEALARE-GASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGIDY 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        86 LVNNAGIaFKVADPTPFhIQAEVT-----MKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMSvralkscspelqqkfr 158
Cdd:PRK07774  87 LVNNAAI-YGGMKLDLL-ITVPWDyykkfMSVNLDGALVCTRAVYKHMAKRggGAIVNQSSTAA---------------- 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       159 setiteeelvglmnkfvedtkkgvhqkegWPSSA-YGVTKIGVTVLSRIHARKLSeqrkGDKILLNACCPGWVRTDMAgp 237
Cdd:PRK07774 149 -----------------------------WLYSNfYGLAKVGLNGLTQQLARELG----GMNIRVNAIAPGPIDTEAT-- 193

                 ....*...
3BHJ_A       238 kATKSPEE 245
Cdd:PRK07774 194 -RTVTPKE 200
PKR_SDR_c cd08945
Polyketide ketoreductase, classical (c) SDR; Polyketide ketoreductase (KR) is a classical SDR ...
6-235 2.54e-16

Polyketide ketoreductase, classical (c) SDR; Polyketide ketoreductase (KR) is a classical SDR with a characteristic NAD-binding pattern and active site tetrad. Aromatic polyketides include various aromatic compounds of pharmaceutical interest. Polyketide KR, part of the type II polyketide synthase (PKS) complex, is comprised of stand-alone domains that resemble the domains found in fatty acid synthase and multidomain type I PKS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187649 [Multi-domain]  Cd Length: 258  Bit Score: 76.42  E-value: 2.54e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:cd08945   5 VALVTGATSGIGLAIARRLGKE-GLRVFVCARGEEGLATTVKELREAGVEADGRTCDVRSVPEIEALVAAAVARYGPIDV 83
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       86 LVNNAG------IAfKVADPTPFHIqAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSvralkscspelqqkfrs 159
Cdd:cd08945  84 LVNNAGrsgggaTA-ELADELWLDV-VETNLTGVFRVTKEVLKAGGMLERGTGRIINIASTGG----------------- 144
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
3BHJ_A      160 etiteeelvglmnkfvedtKKGVHQKEGWPSSAYGVtkIGVTvlsriHARKLSEQRKGdkILLNACCPGWVRTDMA 235
Cdd:cd08945 145 -------------------KQGVVHAAPYSASKHGV--VGFT-----KALGLELARTG--ITVNAVCPGFVETPMA 192
PRK05650 PRK05650
SDR family oxidoreductase;
8-261 3.09e-16

SDR family oxidoreductase;


Pssm-ID: 235545 [Multi-domain]  Cd Length: 270  Bit Score: 76.23  E-value: 3.09e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         8 LVTGGNKGIGLAI----VRDLCRLFSGDVvltarDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:PRK05650   4 MITGAASGLGRAIalrwAREGWRLALADV-----NEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGI 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        84 DVLVNNAGIAF--KVADPTPfhIQAEVTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSimsvralkscspelqqkfrs 159
Cdd:PRK05650  79 DVIVNNAGVASggFFEELSL--EDWDWQIAINLMGVVKGCKAFLPLFKRQksGRIVNIAS-------------------- 136
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       160 etiteeeLVGLMNkfvedtkkgvhqkeGWPSSAYGVTKIGVTVLSrihaRKLSEQRKGDKILLNACCPGWVRTDMAGPKA 239
Cdd:PRK05650 137 -------MAGLMQ--------------GPAMSSYNVAKAGVVALS----ETLLVELADDEIGVHVVCPSFFQTNLLDSFR 191
                        250       260
                 ....*....|....*....|..
3BHJ_A       240 TKSPEEGAETPVYLALLPPDAE 261
Cdd:PRK05650 192 GPNPAMKAQVGKLLEKSPITAA 213
GlcDH_SDR_c cd05358
glucose 1 dehydrogenase (GlcDH), classical (c) SDRs; GlcDH, is a tetrameric member of the SDR ...
6-257 4.34e-16

glucose 1 dehydrogenase (GlcDH), classical (c) SDRs; GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187616 [Multi-domain]  Cd Length: 253  Bit Score: 75.88  E-value: 4.34e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:cd05358   5 VALVTGASSGIGKAIAIRLATAGANVVVNYRSKEDAAEEVVEEIKAVGGKAIAVQADVSKEEDVVALFQSAIKEFGTLDI 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       86 LVNNAGIAFKVA----DPTPFHIQAEVTMKTNFFGTRDVCTEllpLIKPQ--GRVVNVSSimsvralkscspelqqkfrs 159
Cdd:cd05358  85 LVNNAGLQGDASshemTLEDWNKVIDVNLTGQFLCAREAIKR---FRKSKikGKIINMSS-------------------- 141
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      160 etiteeelvglmnkfvedtkkgVHQKEGWPS-SAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTDMAGPk 238
Cdd:cd05358 142 ----------------------VHEKIPWPGhVNYAASKGGVKMMTKTLAQEYAPK----GIRVNAIAPGAINTPINAE- 194
                       250
                ....*....|....*....
3BHJ_A      239 ATKSPEEGAETpvyLALLP 257
Cdd:cd05358 195 AWDDPEQRADL---LSLIP 210
17beta-HSDXI-like_SDR_c cd05339
human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs; 17-beta-hydroxysteroid ...
6-142 4.56e-16

human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs; 17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-Adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187598 [Multi-domain]  Cd Length: 243  Bit Score: 75.36  E-value: 4.56e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLtarDVTRGQAAVQQLQAEGLSPRFH--QLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:cd05339   1 IVLITGGGSGIGRLLALEFAKRGAKVVIL---DINEKGAEETANNVRKAGGKVHyyKCDVSKREEVYEAAKKIKKEVGDV 77
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
3BHJ_A       84 DVLVNNAGIafkVADPTPFHIQ---AEVTMKTNFFGTRDVCTELLPLI--KPQGRVVNVSSIMS 142
Cdd:cd05339  78 TILINNAGV---VSGKKLLELPdeeIEKTFEVNTLAHFWTTKAFLPDMleRNHGHIVTIASVAG 138
ADH_SDR_c_like cd05323
insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs; This subgroup contains ...
6-251 5.12e-16

insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs; This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187584 [Multi-domain]  Cd Length: 244  Bit Score: 75.42  E-value: 5.12e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLtarDVTRGQAAVQQLQA--EGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:cd05323   2 VAIITGGASGIGLATAKLLLKKGAKVAIL---DRNENPGAAAELQAinPKVKATFVQCDVTSWEQLAAAFKKAIEKFGRV 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       84 DVLVNNAGIA-----FKVADPTPfhiQAEVTMKTNFFGTRDVCTELLPLIK-----PQGRVVNVSSIMSVRALKSCspel 153
Cdd:cd05323  79 DILINNAGILdeksyLFAGKLPP---PWEKTIDVNLTGVINTTYLALHYMDknkggKGGVIVNIGSVAGLYPAPQF---- 151
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      154 qqkfrsetiteeelvglmnkfvedtkkgvhqkegwpsSAYGVTKIGVTVLSRiHARKLSEQRKGdkILLNACCPGWVRTD 233
Cdd:cd05323 152 -------------------------------------PVYSASKHGVVGFTR-SLADLLEYKTG--VRVNAICPGFTNTP 191
                       250
                ....*....|....*...
3BHJ_A      234 MAGPKATKSPEEGAETPV 251
Cdd:cd05323 192 LLPDLVAKEAEMLPSAPT 209
PRK07856 PRK07856
SDR family oxidoreductase;
6-236 8.94e-16

SDR family oxidoreductase;


Pssm-ID: 236116 [Multi-domain]  Cd Length: 252  Bit Score: 74.97  E-value: 8.94e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDvtrgqaavQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK07856   8 VVLVTGGTRGIGAGIARAFLAA-GATVVVCGRR--------APETVDGRPAEFHAADVRDPDQVAALVDAIVERHGRLDV 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        86 LVNNAGIAFKV--ADPTP-FHiqaEVTMKTNFFGTRDVCTELLPLIKPQ---GRVVNVSSIMSVRAlkscSPElqqkfrs 159
Cdd:PRK07856  79 LVNNAGGSPYAlaAEASPrFH---EKIVELNLLAPLLVAQAANAVMQQQpggGSIVNIGSVSGRRP----SPG------- 144
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
3BHJ_A       160 etiteeelvglmnkfvedtkkgvhqkegwpSSAYGVTKIGVTVLSRIHArklseQRKGDKILLNACCPGWVRTDMAG 236
Cdd:PRK07856 145 ------------------------------TAAYGAAKAGLLNLTRSLA-----VEWAPKVRVNAVVVGLVRTEQSE 186
PRK06484 PRK06484
short chain dehydrogenase; Validated
6-232 1.21e-15

short chain dehydrogenase; Validated


Pssm-ID: 168574 [Multi-domain]  Cd Length: 520  Bit Score: 76.43  E-value: 1.21e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfsGD-VVLTARDVTRGQAAVQQLQAEGLSprfHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK06484 271 VVAITGGARGIGRAVADRFAAA--GDrLLIIDRDAEGAKKLAEALGDEHLS---VQADITDEAAVESAFAQIQARWGRLD 345
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        85 VLVNNAGIA---FKVADPTPFHIqaEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKscspelqqkfrset 161
Cdd:PRK06484 346 VLVNNAGIAevfKPSLEQSAEDF--TRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLALP-------------- 409
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
3BHJ_A       162 iteeelvglmnkfvedtkkgvhqkegwPSSAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRT 232
Cdd:PRK06484 410 ---------------------------PRNAYCASKAAVTMLSRSLACEWAPA----GIRVNTVAPGYIET 449
PRK07523 PRK07523
gluconate 5-dehydrogenase; Provisional
7-151 1.61e-15

gluconate 5-dehydrogenase; Provisional


Pssm-ID: 236040 [Multi-domain]  Cd Length: 255  Bit Score: 74.03  E-value: 1.61e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVRDLCRlFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVL 86
Cdd:PRK07523  13 ALVTGSSQGIGYALAEGLAQ-AGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPIDIL 91
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
3BHJ_A        87 VNNAGIAFKvadpTP---FHIQA-EVTMKTN----FFGTRDVCTELLPliKPQGRVVNVSSIMSVRALKSCSP 151
Cdd:PRK07523  92 VNNAGMQFR----TPledFPADAfERLLRTNissvFYVGQAVARHMIA--RGAGKIINIASVQSALARPGIAP 158
MDH-like_SDR_c cd05352
mannitol dehydrogenase (MDH)-like, classical (c) SDRs; NADP-mannitol dehydrogenase catalyzes ...
6-262 1.62e-15

mannitol dehydrogenase (MDH)-like, classical (c) SDRs; NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser).


Pssm-ID: 187610 [Multi-domain]  Cd Length: 252  Bit Score: 73.90  E-value: 1.62e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRdLCRLFSGDVVLTARDVTRGQAAVQQLQAE-GLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:cd05352  10 VAIVTGGSRGIGLAIAR-ALAEAGADVAIIYNSAPRAEEKAEELAKKyGVKTKAYKCDVSSQESVEKTFKQIQKDFGKID 88
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       85 VLVNNAGIAF-KVADPTPFHIQAEVtMKTNFFGTRDVCTELLPLIKPQGR--VVNVSSIMSVRALKscsPELQqkfrset 161
Cdd:cd05352  89 ILIANAGITVhKPALDYTYEQWNKV-IDVNLNGVFNCAQAAAKIFKKQGKgsLIITASMSGTIVNR---PQPQ------- 157
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      162 iteeelvglmnkfvedtkkgvhqkegwpsSAYGVTKIGVTVLsrihARKLSEQRKGDKILLNACCPGWVRTDMAGPKATK 241
Cdd:cd05352 158 -----------------------------AAYNASKAAVIHL----AKSLAVEWAKYFIRVNSISPGYIDTDLTDFVDKE 204
                       250       260
                ....*....|....*....|..
3BHJ_A      242 -SPEEGAETPVYLALLPPDAEG 262
Cdd:cd05352 205 lRKKWESYIPLKRIALPEELVG 226
PRK06128 PRK06128
SDR family oxidoreductase;
7-250 1.76e-15

SDR family oxidoreductase;


Pssm-ID: 180413 [Multi-domain]  Cd Length: 300  Bit Score: 74.90  E-value: 1.76e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVRDLCRLfSGDVVLT--------ARDVtrgqaaVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRK 78
Cdd:PRK06128  58 ALITGADSGIGRATAIAFARE-GADIALNylpeeeqdAAEV------VQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK 130
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        79 EYGGLDVLVNNAG--IAFK-VADPTpfHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRAlkscSPELQQ 155
Cdd:PRK06128 131 ELGGLDILVNIAGkqTAVKdIADIT--TEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQP----SPTLLD 204
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       156 kfrsetiteeelvglmnkfvedtkkgvhqkegwpssaYGVTKIGVTVLSRIHARKLSEqrKGdkILLNACCPGWVRTDM- 234
Cdd:PRK06128 205 -------------------------------------YASTKAAIVAFTKALAKQVAE--KG--IRVNAVAPGPVWTPLq 243
                        250
                 ....*....|....*...
3BHJ_A       235 --AGPKATKSPEEGAETP 250
Cdd:PRK06128 244 psGGQPPEKIPDFGSETP 261
PRK12824 PRK12824
3-oxoacyl-ACP reductase;
6-236 2.06e-15

3-oxoacyl-ACP reductase;


Pssm-ID: 183773 [Multi-domain]  Cd Length: 245  Bit Score: 73.65  E-value: 2.06e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSGDVVLTArDVTRGQAAVQQLQAEGLSP---RFHQLDIDDLQSIRALRDFLRKEYGG 82
Cdd:PRK12824   4 IALVTGAKRGIGSAIARELLN--DGYRVIAT-YFSGNDCAKDWFEEYGFTEdqvRLKELDVTDTEECAEALAEIEEEEGP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        83 LDVLVNNAGI----AFKVADPTPFhiqAEVtMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSImsvRALKScspelqqk 156
Cdd:PRK12824  81 VDILVNNAGItrdsVFKRMSHQEW---NDV-INTNLNSVFNVTQPLFAAMCEQgyGRIINISSV---NGLKG-------- 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       157 frsetiteeeLVGLMNkfvedtkkgvhqkegwpssaYGVTKIGVTVLSRIHARKLSeqRKGdkILLNACCPGWVRTDMAG 236
Cdd:PRK12824 146 ----------QFGQTN--------------------YSAAKAGMIGFTKALASEGA--RYG--ITVNCIAPGYIATPMVE 191
PRK06949 PRK06949
SDR family oxidoreductase;
6-234 2.90e-15

SDR family oxidoreductase;


Pssm-ID: 180773 [Multi-domain]  Cd Length: 258  Bit Score: 73.64  E-value: 2.90e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSGdVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK06949  11 VALVTGASSGLGARFAQVLAQAGAK-VVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGTIDI 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        86 LVNNAGIAF--KVADPTP--FHIQAEVTMKTNFFGTRDVCTELL------PLIKPQGRVVNVSSIMSVRALkscsPELqq 155
Cdd:PRK06949  90 LVNNSGVSTtqKLVDVTPadFDFVFDTNTRGAFFVAQEVAKRMIarakgaGNTKPGGRIINIASVAGLRVL----PQI-- 163
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
3BHJ_A       156 kfrsetiteeelvglmnkfvedtkkgvhqkegwpsSAYGVTKIGVTVLSRihARKLSEQRKGdkILLNACCPGWVRTDM 234
Cdd:PRK06949 164 -----------------------------------GLYCMSKAAVVHMTR--AMALEWGRHG--INVNAICPGYIDTEI 203
PRK06197 PRK06197
short chain dehydrogenase; Provisional
6-140 2.91e-15

short chain dehydrogenase; Provisional


Pssm-ID: 235737 [Multi-domain]  Cd Length: 306  Bit Score: 74.29  E-value: 2.91e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAE--GLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:PRK06197  18 VAVVTGANTGLGYETAAALAAK-GAHVVLAVRNLDKGKAAAARITAAtpGADVTLQELDLTSLASVRAAADALRAAYPRI 96
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
3BHJ_A        84 DVLVNNAGIAFkvadpTPFHIQA---EVTMKTNFFG----TRDVCTELLPLikPQGRVVNVSSI 140
Cdd:PRK06197  97 DLLINNAGVMY-----TPKQTTAdgfELQFGTNHLGhfalTGLLLDRLLPV--PGSRVVTVSSG 153
PRK08213 PRK08213
gluconate 5-dehydrogenase; Provisional
6-235 3.44e-15

gluconate 5-dehydrogenase; Provisional


Pssm-ID: 181295 [Multi-domain]  Cd Length: 259  Bit Score: 73.44  E-value: 3.44e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLcRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK08213  14 TALVTGGSRGLGLQIAEAL-GEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGHVDI 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        86 LVNNAGIAFKV-ADPTPFHIQAEVtMKTN----FFGTRDVCTEllpLIKPQ--GRVVNVSSIMsvrALKSCSPELQQkfr 158
Cdd:PRK08213  93 LVNNAGATWGApAEDHPVEAWDKV-MNLNvrglFLLSQAVAKR---SMIPRgyGRIINVASVA---GLGGNPPEVMD--- 162
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
3BHJ_A       159 seTIteeelvglmnkfvedtkkgvhqkegwpssAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTDMA 235
Cdd:PRK08213 163 --TI-----------------------------AYNTSKGAVINFTRALAAEWGPH----GIRVNAIAPGFFPTKMT 204
PRK05854 PRK05854
SDR family oxidoreductase;
7-140 7.44e-15

SDR family oxidoreductase;


Pssm-ID: 235627 [Multi-domain]  Cd Length: 313  Bit Score: 73.18  E-value: 7.44e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVRdlcRLFSG--DVVLTARDVTRGQAAVQQLQAEglSPR----FHQLDIDDLQSIRALRDFLRKEY 80
Cdd:PRK05854  17 AVVTGASDGLGLGLAR---RLAAAgaEVILPVRNRAKGEAAVAAIRTA--VPDaklsLRALDLSSLASVAALGEQLRAEG 91
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
3BHJ_A        81 GGLDVLVNNAGIAfkvadpTPFHIQA-----EVTMKTNFFGTRDVCTELLPLIKP-QGRVVNVSSI 140
Cdd:PRK05854  92 RPIHLLINNAGVM------TPPERQTtadgfELQFGTNHLGHFALTAHLLPLLRAgRARVTSQSSI 151
PRK12829 PRK12829
short chain dehydrogenase; Provisional
6-235 8.17e-15

short chain dehydrogenase; Provisional


Pssm-ID: 183778 [Multi-domain]  Cd Length: 264  Bit Score: 72.40  E-value: 8.17e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDvtrgQAAVQQLQAE--GLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:PRK12829  13 RVLVTGGASGIGRAIAEAFAEA-GARVHVCDVS----EAALAATAARlpGAKVTATVADVADPAQVERVFDTAVERFGGL 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        84 DVLVNNAGIA---FKVADPTPFHIQAevTMKTNFFGTRDVCTELLPLIK--PQGRVVNVSSIMSVRAlkscspelqqkfr 158
Cdd:PRK12829  88 DVLVNNAGIAgptGGIDEITPEQWEQ--TLAVNLNGQFYFARAAVPLLKasGHGGVIIALSSVAGRL------------- 152
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
3BHJ_A       159 setiteeelvglmnkfvedtkkgvhqkeGWP-SSAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTDMA 235
Cdd:PRK12829 153 ----------------------------GYPgRTPYAASKWAVVGLVKSLAIELGPL----GIRVNAILPGIVRGPRM 198
PRK08324 PRK08324
bifunctional aldolase/short-chain dehydrogenase;
5-151 1.01e-14

bifunctional aldolase/short-chain dehydrogenase;


Pssm-ID: 236241 [Multi-domain]  Cd Length: 681  Bit Score: 73.73  E-value: 1.01e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         5 HVALVTGGNKGIGLAIVRDLCRLfsG-DVVLTARDVTRGQAAVQQLQAEGlSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:PRK08324 423 KVALVTGAAGGIGKATAKRLAAE--GaCVVLADLDEEAAEAAAAELGGPD-RALGVACDVTDEAAVQAAFEEAALAFGGV 499
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
3BHJ_A        84 DVLVNNAGIAFkvadPTPFhiqAEVTMKT-------NFFGTRDVCTELLPLIKPQ---GRVVNVSSIMSVRALKSCSP 151
Cdd:PRK08324 500 DIVVSNAGIAI----SGPI---EETSDEDwrrsfdvNATGHFLVAREAVRIMKAQglgGSIVFIASKNAVNPGPNFGA 570
PRK07063 PRK07063
SDR family oxidoreductase;
6-258 1.07e-14

SDR family oxidoreductase;


Pssm-ID: 235924 [Multi-domain]  Cd Length: 260  Bit Score: 72.01  E-value: 1.07e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRdlcrLFSGD---VVLTARDVTRGQAAVQQLQAEGLSPR--FHQLDIDDLQSIRALRDFLRKEY 80
Cdd:PRK07063   9 VALVTGAAQGIGAAIAR----AFAREgaaVALADLDAALAERAAAAIARDVAGARvlAVPADVTDAASVAAAVAAAEEAF 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        81 GGLDVLVNNAGI-AFkvADPTpfhiqaEVT-------MKTNFFGTRDVCTELLPLIKPQGR--VVNVSSIMSVRALKSCS 150
Cdd:PRK07063  85 GPLDVLVNNAGInVF--ADPL------AMTdedwrrcFAVDLDGAWNGCRAVLPGMVERGRgsIVNIASTHAFKIIPGCF 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       151 PelqqkfrsetiteeelvglmnkfvedtkkgvhqkegwpssaYGVTKIGVTVLSRihARKLSEQRKGdkILLNACCPGWV 230
Cdd:PRK07063 157 P-----------------------------------------YPVAKHGLLGLTR--ALGIEYAARN--VRVNAIAPGYI 191
                        250       260
                 ....*....|....*....|....*...
3BHJ_A       231 RTDMAGPKATKSPEEGAETPVYLALLPP 258
Cdd:PRK07063 192 ETQLTEDWWNAQPDPAAARAETLALQPM 219
PRK06198 PRK06198
short chain dehydrogenase; Provisional
6-140 1.22e-14

short chain dehydrogenase; Provisional


Pssm-ID: 180462 [Multi-domain]  Cd Length: 260  Bit Score: 71.57  E-value: 1.22e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK06198   8 VALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFGRLDA 87
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
3BHJ_A        86 LVNNAGI----AFKVADPTPFHIQAEVTMKTNFFGTRDVcTELLPLIKPQGRVVNVSSI 140
Cdd:PRK06198  88 LVNAAGLtdrgTILDTSPELFDRHFAVNVRAPFFLMQEA-IKLMRRRKAEGTIVNIGSM 145
SDR_c11 cd05364
classical (c) SDR, subgroup 11; SDRs are a functionally diverse family of oxidoreductases that ...
6-144 2.23e-14

classical (c) SDR, subgroup 11; SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187622 [Multi-domain]  Cd Length: 253  Bit Score: 70.90  E-value: 2.23e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRK---EYGG 82
Cdd:cd05364   5 VAIITGSSSGIGAGTAILFARL-GARLALTGRDAERLEETRQSCLQAGVSEKKILLVVADLTEEEGQDRIISTtlaKFGR 83
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
3BHJ_A       83 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLP-LIKPQGRVVNVSSIMSVR 144
Cdd:cd05364  84 LDILVNNAGILAKGGGEDQDIEEYDKVMNLNLRAVIYLTKLAVPhLIKTKGEIVNVSSVAGGR 146
SDR_c5 cd05346
classical (c) SDR, subgroup 5; These proteins are members of the classical SDR family, with a ...
7-140 2.34e-14

classical (c) SDR, subgroup 5; These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187604 [Multi-domain]  Cd Length: 249  Bit Score: 70.77  E-value: 2.34e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        7 ALVTGGNKGIGLAIvrdlCRLFSG---DVVLTARDVTRGQAAVQQLQAEgLSPRFH--QLDIDDLQSIRALRDFLRKEYG 81
Cdd:cd05346   3 VLITGASSGIGEAT----ARRFAKagaKLILTGRRAERLQELADELGAK-FPVKVLplQLDVSDRESIEAALENLPEEFR 77
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|..
3BHJ_A       82 GLDVLVNNAGIAFKVADPTPFHIQAEVTM-KTNFFGTRDVCTELLP--LIKPQGRVVNVSSI 140
Cdd:cd05346  78 DIDILVNNAGLALGLDPAQEADLEDWETMiDTNVKGLLNVTRLILPimIARNQGHIINLGSI 139
meso-BDH-like_SDR_c cd05366
meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs; 2,3-butanediol dehydrogenases ...
6-234 3.19e-14

meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs; 2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187624 [Multi-domain]  Cd Length: 257  Bit Score: 70.48  E-value: 3.19e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRG-QAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:cd05366   4 VAIITGAAQGIGRAIAERLAA--DGfNIVLADLNLEEAaKSTIQEISEAGYNAVAVGADVTDKDDVEALIDQAVEKFGSF 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       84 DVLVNNAGIafkvADPTPF-HIQAEVTMKT---NFFGTRDVCTELLPLIKPQ---GRVVNVSSIMSVRALkscsPELqqk 156
Cdd:cd05366  82 DVMVNNAGI----APITPLlTITEEDLKKVyavNVFGVLFGIQAAARQFKKLghgGKIINASSIAGVQGF----PNL--- 150
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
3BHJ_A      157 frsetiteeelvglmnkfvedtkkgvhqkegwpsSAYGVTKIGVTVLSRIHARKLSeqrkGDKILLNACCPGWVRTDM 234
Cdd:cd05366 151 ----------------------------------GAYSASKFAVRGLTQTAAQELA----PKGITVNAYAPGIVKTEM 190
3alpha_HSD_SDR_c cd05328
alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs; Bacterial 3-alpha_HSD, ...
8-266 3.80e-14

alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs; Bacterial 3-alpha_HSD, which catalyzes the NAD-dependent oxidoreduction of hydroxysteroids, is a dimeric member of the classical SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187589 [Multi-domain]  Cd Length: 250  Bit Score: 70.22  E-value: 3.80e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        8 LVTGGNKGIGLAiVRDLCRlFSGDVVLTardVTRGQAAVQQlqaeglsprfhqlDIDDLQSIR-ALRDFLRKEYGGLDVL 86
Cdd:cd05328   3 VITGAASGIGAA-TAELLE-DAGHTVIG---IDLREADVIA-------------DLSTPEGRAaAIADVLARCSGVLDGL 64
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       87 VNNAGiafkVADPTPfhiqAEVTMKTNFFGTRDVCTELLPLIKP--QGRVVNVSSIMSVralkscspELQQKfrsetitE 164
Cdd:cd05328  65 VNCAG----VGGTTV----AGLVLKVNYFGLRALMEALLPRLRKghGPAAVVVSSIAGA--------GWAQD-------K 121
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      165 EELVGLMNKFVEDTKKGVHQKEGWPSS-AYGVTKIGVTVLSRIHARKlSEQRKGdkILLNACCPGWVRT--------DMA 235
Cdd:cd05328 122 LELAKALAAGTEARAVALAEHAGQPGYlAYAGSKEALTVWTRRRAAT-WLYGAG--VRVNTVAPGPVETpilqaflqDPR 198
                       250       260       270       280
                ....*....|....*....|....*....|....*....|.
3BHJ_A      236 GPKATKS----------PEEGAetPVYLALLPPDAEGPHGQ 266
Cdd:cd05328 199 GGESVDAfvtpmgrraePDEIA--PVIAFLASDAASWINGA 237
PRK07035 PRK07035
SDR family oxidoreductase;
6-236 3.90e-14

SDR family oxidoreductase;


Pssm-ID: 180802 [Multi-domain]  Cd Length: 252  Bit Score: 70.04  E-value: 3.90e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK07035  10 IALVTGASRGIGEAIAKLLAQ-QGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRLDI 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        86 LVNNAGiafkvADPTPFHIQA----------EVTMKTNFFgtrdVCTELLPLIKPQGR--VVNVSSIMSVralkscSPEL 153
Cdd:PRK07035  89 LVNNAA-----ANPYFGHILDtdlgafqktvDVNIRGYFF----MSVEAGKLMKEQGGgsIVNVASVNGV------SPGD 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       154 QQkfrsetiteeelvglmnkfvedtkkGVhqkegwpssaYGVTKIGVTVLSRIHARKLSEqrkgDKILLNACCPGWVRTD 233
Cdd:PRK07035 154 FQ-------------------------GI----------YSITKAAVISMTKAFAKECAP----FGIRVNALLPGLTDTK 194

                 ...
3BHJ_A       234 MAG 236
Cdd:PRK07035 195 FAS 197
fabG PRK07666
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
6-139 4.07e-14

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 236074 [Multi-domain]  Cd Length: 239  Bit Score: 70.10  E-value: 4.07e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK07666   9 NALITGAGRGIGRAVAIALAK--EGvNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSID 86
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
3BHJ_A        85 VLVNNAGIA-F-KVADPTPfhIQAEVTMKTNFFGTRDVCTELLP-LI-KPQGRVVNVSS 139
Cdd:PRK07666  87 ILINNAGISkFgKFLELDP--AEWEKIIQVNLMGVYYATRAVLPsMIeRQSGDIINISS 143
LPOR_like_SDR_c_like cd09810
light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs; Classical ...
7-140 4.49e-14

light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs; Classical SDR-like subgroup containing LPOR and related proteins. Protochlorophyllide (Pchlide) reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187670 [Multi-domain]  Cd Length: 311  Bit Score: 71.01  E-value: 4.49e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        7 ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVL 86
Cdd:cd09810   4 VVITGASSGLGLAAAKALARRGEWHVVMACRDFLKAEQAAQEVGMPKDSYSVLHCDLASLDSVRQFVDNFRRTGRPLDAL 83
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*....
3BHJ_A       87 VNNAGIAFKVADPTPFHIQA-EVTMKTNFFGTRDVCTELLPLIK----PQGRVVNVSSI 140
Cdd:cd09810  84 VCNAAVYLPTAKEPRFTADGfELTVGVNHLGHFLLTNLLLEDLQrsenASPRIVIVGSI 142
TER_DECR_SDR_a cd05369
Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR; TTER ...
6-145 9.24e-14

Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR; TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187627 [Multi-domain]  Cd Length: 249  Bit Score: 69.15  E-value: 9.24e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRF-HQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:cd05369   5 VAFITGGGTGIGKAIAKAFAEL-GASVAIAGRKPEVLEAAAEEISSATGGRAHpIQCDVRDPEAVEAAVDETLKEFGKID 83
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
3BHJ_A       85 VLVNNAGIAFkvadPTPF-HIQA---EVTMKTNFFGTRDVCTELLP-LI--KPQGRVVNVSSIMSVRA 145
Cdd:cd05369  84 ILINNAAGNF----LAPAeSLSPngfKTVIDIDLNGTFNTTKAVGKrLIeaKHGGSILNISATYAYTG 147
fabG PRK05565
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
6-245 1.23e-13

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 235506 [Multi-domain]  Cd Length: 247  Bit Score: 68.72  E-value: 1.23e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK05565   7 VAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGKIDI 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        86 LVNNAGIAFKVadptPFhiqAEVT-------MKTNFFGTRDVCTELLPLI--KPQGRVVNVSSImsvRALKSCSPElqqk 156
Cdd:PRK05565  87 LVNNAGISNFG----LV---TDMTdeewdrvIDVNLTGVMLLTRYALPYMikRKSGVIVNISSI---WGLIGASCE---- 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       157 frsetiteeelvglmnkfvedtkkgvhqkegwpsSAYGVTKIGVTVLSRIHARKLSEQRkgdkILLNACCPGWVRTDMAg 236
Cdd:PRK05565 153 ----------------------------------VLYSASKGAVNAFTKALAKELAPSG----IRVNAVAPGAIDTEMW- 193

                 ....*....
3BHJ_A       237 pkATKSPEE 245
Cdd:PRK05565 194 --SSFSEED 200
PRK06179 PRK06179
short chain dehydrogenase; Provisional
6-140 1.56e-13

short chain dehydrogenase; Provisional


Pssm-ID: 235725 [Multi-domain]  Cd Length: 270  Bit Score: 68.78  E-value: 1.56e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDL----CRLFSgdvvlTARDVTRgqaavqqlqAEGLSP-RFHQLDIDDLQSIRALRDFLRKEY 80
Cdd:PRK06179   6 VALVTGASSGIGRATAEKLaragYRVFG-----TSRNPAR---------AAPIPGvELLELDVTDDASVQAAVDEVIARA 71
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
3BHJ_A        81 GGLDVLVNNAGIAFkVADPTPFHI-QAEVTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSI 140
Cdd:PRK06179  72 GRIDVLVNNAGVGL-AGAAEESSIaQAQALFDTNVFGILRMTRAVLPHMRAQgsGRIINISSV 133
Mgc4172-like_SDR_c cd05343
human Mgc4172-like, classical (c) SDRs; Human Mgc4172-like proteins, putative SDRs. These ...
6-249 1.81e-13

human Mgc4172-like, classical (c) SDRs; Human Mgc4172-like proteins, putative SDRs. These proteins are members of the SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187601 [Multi-domain]  Cd Length: 250  Bit Score: 68.31  E-value: 1.81e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRlFSGDVVLTARDVTRGQAAVQQLQAEGLSPRF-HQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:cd05343   8 VALVTGASVGIGAAVARALVQ-HGMKVVGCARRVDKIEALAAECQSAGYPTLFpYQCDLSNEEQILSMFSAIRTQHQGVD 86
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       85 VLVNNAGIAFkvadPTPFhiqaevtmktnFFGTRDVCTELLPLikpqgrvvnvssimSVRALKSCSPELQQKFRSETITE 164
Cdd:cd05343  87 VCINNAGLAR----PEPL-----------LSGKTEGWKEMFDV--------------NVLALSICTREAYQSMKERNVDD 137
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      165 EELVgLMNKFVedtkkGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKgdKILLNACCPGWVRTDMAGPKATKSPE 244
Cdd:cd05343 138 GHII-NINSMS-----GHRVPPVSVFHFYAATKHAVTALTEGLRQELREAKT--HIRATSISPGLVETEFAFKLHDNDPE 209

                ....*
3BHJ_A      245 EGAET 249
Cdd:cd05343 210 KAAAT 214
PRK08226 PRK08226
SDR family oxidoreductase UcpA;
6-249 1.96e-13

SDR family oxidoreductase UcpA;


Pssm-ID: 181305 [Multi-domain]  Cd Length: 263  Bit Score: 68.29  E-value: 1.96e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAvQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK08226   8 TALITGALQGIGEGIARVFARH-GANLILLDISPEIEKLA-DELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRIDI 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        86 LVNNAGI---AFKVADPTP---FHIQaevtmkTNFFGTRDVCTELLP--LIKPQGRVVNVSSImsvralkscspelqqkf 157
Cdd:PRK08226  86 LVNNAGVcrlGSFLDMSDEdrdFHID------INIKGVWNVTKAVLPemIARKDGRIVMMSSV----------------- 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       158 rsetiteeelVGLMnkfVEDtkkgvhqkEGwpSSAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTDMAGP 237
Cdd:PRK08226 143 ----------TGDM---VAD--------PG--ETAYALTKAAIVGLTKSLAVEYAQS----GIRVNAICPGYVRTPMAES 195
                        250
                 ....*....|..
3BHJ_A       238 KATKSPEEGAET 249
Cdd:PRK08226 196 IARQSNPEDPES 207
PRK06182 PRK06182
short chain dehydrogenase; Validated
6-140 2.00e-13

short chain dehydrogenase; Validated


Pssm-ID: 180448 [Multi-domain]  Cd Length: 273  Bit Score: 68.45  E-value: 2.00e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfsGDVVL-TARDVTRgqaaVQQLQAEGLSPRfhQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK06182   5 VALVTGASSGIGKATARRLAAQ--GYTVYgAARRVDK----MEDLASLGVHPL--SLDVTDEASIKAAVDTIIAEEGRID 76
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
3BHJ_A        85 VLVNNAGI-AFKVADPTPFHiQAEVTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSI 140
Cdd:PRK06182  77 VLVNNAGYgSYGAIEDVPID-EARRQFEVNLFGAARLTQLVLPHMRAQrsGRIINISSM 134
PRK07806 PRK07806
SDR family oxidoreductase;
6-183 2.44e-13

SDR family oxidoreductase;


Pssm-ID: 181126 [Multi-domain]  Cd Length: 248  Bit Score: 67.82  E-value: 2.44e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK07806   8 TALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGGLDA 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        86 LVNNA-GIAFKVADPtpfhiqaEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS-----IMSVRALkscsPELQQKFRS 159
Cdd:PRK07806  88 LVLNAsGGMESGMDE-------DYAMRLNRDAQRNLARAALPLMPAGSRVVFVTShqahfIPTVKTM----PEYEPVARS 156
                        170       180
                 ....*....|....*....|....
3BHJ_A       160 ETITEEELVGLMNKFvedTKKGVH 183
Cdd:PRK07806 157 KRAGEDALRALRPEL---AEKGIG 177
PRK08017 PRK08017
SDR family oxidoreductase;
8-141 2.49e-13

SDR family oxidoreductase;


Pssm-ID: 181198 [Multi-domain]  Cd Length: 256  Bit Score: 68.19  E-value: 2.49e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         8 LVTGGNKGIGLAIVRDLCRlfSGDVVLTArdvTRGQAAVQQLQAEGLSPRfhQLDIDDLQSI-RALRDFLRKEYGGLDVL 86
Cdd:PRK08017   6 LITGCSSGIGLEAALELKR--RGYRVLAA---CRKPDDVARMNSLGFTGI--LLDLDDPESVeRAADEVIALTDNRLYGL 78
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
3BHJ_A        87 VNNAGiaFKVADP--TPFHIQAEVTMKTNFFGTRDVCTELLPLIKP--QGRVVNVSSIM 141
Cdd:PRK08017  79 FNNAG--FGVYGPlsTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPhgEGRIVMTSSVM 135
PRK08063 PRK08063
enoyl-[acyl-carrier-protein] reductase FabL;
6-147 2.58e-13

enoyl-[acyl-carrier-protein] reductase FabL;


Pssm-ID: 236145 [Multi-domain]  Cd Length: 250  Bit Score: 67.82  E-value: 2.58e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK08063   6 VALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGRLDV 85
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
3BHJ_A        86 LVNNAgiAFKVADPTpfhIQAEV-----TMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMSVRALK 147
Cdd:PRK08063  86 FVNNA--ASGVLRPA---MELEEshwdwTMNINAKALLFCAQEAAKLMEKVggGKIISLSSLGSIRYLE 149
PRK07109 PRK07109
short chain dehydrogenase; Provisional
6-146 4.11e-13

short chain dehydrogenase; Provisional


Pssm-ID: 235935 [Multi-domain]  Cd Length: 334  Bit Score: 68.02  E-value: 4.11e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK07109  10 VVVITGASAGVGRATARAFAR--RGaKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPID 87
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
3BHJ_A        85 VLVNNAGIA-FKVADPTPFHIQAEVTmKTNFFGTrdVCTEL--LPLIKPQGR--VVNVSSIMSVRAL 146
Cdd:PRK07109  88 TWVNNAMVTvFGPFEDVTPEEFRRVT-EVTYLGV--VHGTLaaLRHMRPRDRgaIIQVGSALAYRSI 151
PRK07890 PRK07890
short chain dehydrogenase; Provisional
15-230 6.39e-13

short chain dehydrogenase; Provisional


Pssm-ID: 181159 [Multi-domain]  Cd Length: 258  Bit Score: 66.90  E-value: 6.39e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        15 GIGLAIVRDLCRLFS---GDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAG 91
Cdd:PRK07890  12 GVGPGLGRTLAVRAAragADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRVDALVNNAF 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        92 I--AFK-VADPTPFHIQAevTMKTNFFGTRDVCTELLPLIKPQ-GRVVNVSSiMSVRalKScspelQQKFrsetiteeel 167
Cdd:PRK07890  92 RvpSMKpLADADFAHWRA--VIELNVLGTLRLTQAFTPALAESgGSIVMINS-MVLR--HS-----QPKY---------- 151
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
3BHJ_A       168 vglmnkfvedtkkgvhqkegwpsSAYGVTKIGVTVLSRIHARKLSEQRkgdkILLNACCPGWV 230
Cdd:PRK07890 152 -----------------------GAYKMAKGALLAASQSLATELGPQG----IRVNSVAPGYI 187
RDH_SDR_c cd08933
retinal dehydrogenase-like, classical (c) SDR; These classical SDRs includes members ...
6-156 7.05e-13

retinal dehydrogenase-like, classical (c) SDR; These classical SDRs includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the short-chain dehydrogenases/reductase family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187638 [Multi-domain]  Cd Length: 261  Bit Score: 66.79  E-value: 7.05e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:cd08933  11 VVIVTGGSRGIGRGIVRAFVE--NGaKVVFCARGEAAGQALESELNRAGPgSCKFVPCDVTKEEDIKTLISVTVERFGRI 88
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       84 DVLVNNAGIAfkvadptPFHIQAEVT--------MKTNFFGTRDVCTELLP-LIKPQGRVVNVSSIMSVRALKSCSPELQ 154
Cdd:cd08933  89 DCLVNNAGWH-------PPHQTTDETsaqefrdlLNLNLISYFLASKYALPhLRKSQGNIINLSSLVGSIGQKQAAPYVA 161

                ..
3BHJ_A      155 QK 156
Cdd:cd08933 162 TK 163
PRK06841 PRK06841
short chain dehydrogenase; Provisional
6-146 7.87e-13

short chain dehydrogenase; Provisional


Pssm-ID: 180723 [Multi-domain]  Cd Length: 255  Bit Score: 66.61  E-value: 7.87e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRdlcrLFS---GDVVLTARDVTRGQAAVQQLQAEGLSprfHQLDIDDLQSIRALRDFLRKEYGG 82
Cdd:PRK06841  17 VAVVTGGASGIGHAIAE----LFAakgARVALLDRSEDVAEVAAQLLGGNAKG---LVCDVSDSQSVEAAVAAVISAFGR 89
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
3BHJ_A        83 LDVLVNNAGIAF--KVADPTPFHIQA--EVTMKTNFFGTRDVCTELLPliKPQGRVVNVSSIMSVRAL 146
Cdd:PRK06841  90 IDILVNSAGVALlaPAEDVSEEDWDKtiDINLKGSFLMAQAVGRHMIA--AGGGKIVNLASQAGVVAL 155
PRK05866 PRK05866
SDR family oxidoreductase;
8-139 7.90e-13

SDR family oxidoreductase;


Pssm-ID: 235631 [Multi-domain]  Cd Length: 293  Bit Score: 67.07  E-value: 7.90e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         8 LVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLV 87
Cdd:PRK05866  44 LLTGASSGIGEAAAEQFARR-GATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGVDILI 122
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
3BHJ_A        88 NNAG--IAFKVADPTP-FHiQAEVTMKTNFFGTRDVCTELLP--LIKPQGRVVNVSS 139
Cdd:PRK05866 123 NNAGrsIRRPLAESLDrWH-DVERTMVLNYYAPLRLIRGLAPgmLERGDGHIINVAT 178
PRK13394 PRK13394
3-hydroxybutyrate dehydrogenase; Provisional
6-275 7.95e-13

3-hydroxybutyrate dehydrogenase; Provisional


Pssm-ID: 184025 [Multi-domain]  Cd Length: 262  Bit Score: 66.84  E-value: 7.95e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK13394   9 TAVVTGAASGIGKEIALELARA-GAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSVDI 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        86 LVNNAGIafKVADPT---PFH----IQAeVTMKTNFFGTRDVcteLLPLIKPQ--GRVVNVSSimsvralkscspelqqk 156
Cdd:PRK13394  88 LVSNAGI--QIVNPIenySFAdwkkMQA-IHVDGAFLTTKAA---LKHMYKDDrgGVVIYMGS----------------- 144
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       157 frsetiteeelvglmnkfvedtkkgVHQKEGWP-SSAYGVTKIGVTVLSRIharkLSEQRKGDKILLNACCPGWVRT--- 232
Cdd:PRK13394 145 -------------------------VHSHEASPlKSAYVTAKHGLLGLARV----LAKEGAKHNVRSHVVCPGFVRTplv 195
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
3BHJ_A       233 DMAGPKATKspEEG-AETPVYLALLPPDAegPHGQFVSEKRVEQ 275
Cdd:PRK13394 196 DKQIPEQAK--ELGiSEEEVVKKVMLGKT--VDGVFTTVEDVAQ 235
PRK06057 PRK06057
short chain dehydrogenase; Provisional
6-255 1.18e-12

short chain dehydrogenase; Provisional


Pssm-ID: 180371 [Multi-domain]  Cd Length: 255  Bit Score: 65.91  E-value: 1.18e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRdlcRLFS--GDVVLTARDVTRGQAAVQQLqaEGLsprFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:PRK06057   9 VAVITGGGSGIGLATAR---RLAAegATVVVGDIDPEAGKAAADEV--GGL---FVPTDVTDEDAVNALFDTAAETYGSV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        84 DVLVNNAGIA------FKVADPTPFHIQAEVTMKTNFFgtrdVCTELLPLIKPQGR--VVNVSSIMSVraLKSCSPELqq 155
Cdd:PRK06057  81 DIAFNNAGISppeddsILNTGLDAWQRVQDVNLTSVYL----CCKAALPHMVRQGKgsIINTASFVAV--MGSATSQI-- 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       156 kfrsetiteeelvglmnkfvedtkkgvhqkegwpssAYGVTKIGVTVLSrihaRKLSEQRKGDKILLNACCPGWVRTDMA 235
Cdd:PRK06057 153 ------------------------------------SYTASKGGVLAMS----RELGVQFARQGIRVNALCPGPVNTPLL 192
                        250       260
                 ....*....|....*....|
3BHJ_A       236 GPKATKSPEEGAETPVYLAL 255
Cdd:PRK06057 193 QELFAKDPERAARRLVHVPM 212
type2_17beta_HSD-like_SDR_c cd09805
human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs; ...
8-141 1.33e-12

human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs; 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical-SDR subgroup includes the human proteins: type 2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD, dehydrogenase/reductase SDR family member 9, short-chain dehydrogenase/reductase family 9C member 7, 3-hydroxybutyrate dehydrogenase type 1, and retinol dehydrogenase 5. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187665 [Multi-domain]  Cd Length: 281  Bit Score: 66.15  E-value: 1.33e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        8 LVTGGNKGIGLAIVRDLCRLfsGDVVLtARDVTRGQAAVQQLQAEgLSPRFH--QLDIDDLQSIRALRDFLRKEYG--GL 83
Cdd:cd09805   4 LITGCDSGFGNLLAKKLDSL--GFTVL-AGCLTKNGPGAKELRRV-CSDRLRtlQLDVTKPEQIKRAAQWVKEHVGekGL 79
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
3BHJ_A       84 DVLVNNAGIA--FKVADPTPFHIQAEVtMKTNFFGTRDVCTELLPLI-KPQGRVVNVSSIM 141
Cdd:cd09805  80 WGLVNNAGILgfGGDEELLPMDDYRKC-MEVNLFGTVEVTKAFLPLLrRAKGRVVNVSSMG 139
PRK12827 PRK12827
short chain dehydrogenase; Provisional
6-145 1.45e-12

short chain dehydrogenase; Provisional


Pssm-ID: 237219 [Multi-domain]  Cd Length: 249  Bit Score: 65.90  E-value: 1.45e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLcRLFSGDVVLTARDVTRG----QAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 81
Cdd:PRK12827   8 RVLITGGSGGLGRAIAVRL-AADGADVIVLDIHPMRGraeaDAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVEEFG 86
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
3BHJ_A        82 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELL-PLIKPQ--GRVVNVSSIMSVRA 145
Cdd:PRK12827  87 RLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALpPMIRARrgGRIVNIASVAGVRG 153
SDR_c6 cd05350
classical (c) SDR, subgroup 6; These proteins are members of the classical SDR family, with a ...
7-235 1.77e-12

classical (c) SDR, subgroup 6; These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187608 [Multi-domain]  Cd Length: 239  Bit Score: 65.43  E-value: 1.77e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        7 ALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:cd05350   1 VLITGASSGIGRALAREFAK--AGyNVALAARRTDRLDELKAELLNPNPSVEVEILDVTDEERNQLVIAELEAELGGLDL 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       86 LVNNAGIAFkvadPTPFHI-QAEV---TMKTNFFGTRDVCTELLPLIKPQGR--VVNVSSIMSVRalkscspelqqkfrs 159
Cdd:cd05350  79 VIINAGVGK----GTSLGDlSFKAfreTIDTNLLGAAAILEAALPQFRAKGRghLVLISSVAALR--------------- 139
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
3BHJ_A      160 etiteeelvglmnkfvedtkkgvhqkeGWP-SSAYGVTKIGVTVLsrihARKLSEQRKGDKILLNACCPGWVRTDMA 235
Cdd:cd05350 140 ---------------------------GLPgAAAYSASKAALSSL----AESLRYDVKKRGIRVTVINPGFIDTPLT 185
PRK06196 PRK06196
oxidoreductase; Provisional
6-140 2.06e-12

oxidoreductase; Provisional


Pssm-ID: 235736 [Multi-domain]  Cd Length: 315  Bit Score: 65.86  E-value: 2.06e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCrLFSGDVVLTARDVTRGQAAVQQLqaEGLSprFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK06196  28 TAIVTGGYSGLGLETTRALA-QAGAHVIVPARRPDVAREALAGI--DGVE--VVMLDLADLESVRAFAERFLDSGRRIDI 102
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
3BHJ_A        86 LVNNAGIafkVADP-TPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQG--RVVNVSSI 140
Cdd:PRK06196 103 LINNAGV---MACPeTRVGDGWEAQFATNHLGHFALVNLLWPALAAGAgaRVVALSSA 157
PRK07074 PRK07074
SDR family oxidoreductase;
6-244 2.09e-12

SDR family oxidoreductase;


Pssm-ID: 180823 [Multi-domain]  Cd Length: 257  Bit Score: 65.56  E-value: 2.09e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLcrLFSGDVVLTA-RDVTRGQAAVQQLQAEGLSPRfhQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK07074   4 TALVTGAAGGIGQALARRF--LAAGDRVLALdIDAAALAAFADALGDARFVPV--ACDLTDAASLAAALANAAAERGPVD 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        85 VLVNNAGIAFKV--ADPTPFHIQAEVTMKTN--FFGTRDVCTELLPliKPQGRVVNVSSIMSVRALkscspelqqkfrse 160
Cdd:PRK07074  80 VLVANAGAARAAslHDTTPASWRADNALNLEaaYLCVEAVLEGMLK--RSRGAVVNIGSVNGMAAL-------------- 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       161 titeeelvglmnkfvedtkkgvhqkeGWPssAYGVTKIGVTVLSRIHARKLSEqrkgDKILLNACCPGWVRTDMAGPKAT 240
Cdd:PRK07074 144 --------------------------GHP--AYSAAKAGLIHYTKLLAVEYGR----FGIRANAVAPGTVKTQAWEARVA 191

                 ....
3BHJ_A       241 KSPE 244
Cdd:PRK07074 192 ANPQ 195
PRK07060 PRK07060
short chain dehydrogenase; Provisional
5-235 2.21e-12

short chain dehydrogenase; Provisional


Pssm-ID: 180817 [Multi-domain]  Cd Length: 245  Bit Score: 65.12  E-value: 2.21e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         5 HVALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDvtrgQAAVQQLQAE-GLSPRfhQLDIDDLQSIRALRDflrkEYGG 82
Cdd:PRK07060  10 KSVLVTGASSGIGRACAVALAQ--RGaRVVAAARN----AAALDRLAGEtGCEPL--RLDVGDDAAIRAALA----AAGA 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        83 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGR---VVNVSSIMSVRALKScspelqqkfrs 159
Cdd:PRK07060  78 FDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRggsIVNVSSQAALVGLPD----------- 146
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
3BHJ_A       160 etiteeelvglmnkfvedtkkgvHqkegwpsSAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTDMA 235
Cdd:PRK07060 147 -----------------------H-------LAYCASKAALDAITRVLCVELGPH----GIRVNSVNPTVTLTPMA 188
PRK05693 PRK05693
SDR family oxidoreductase;
6-143 2.26e-12

SDR family oxidoreductase;


Pssm-ID: 168186 [Multi-domain]  Cd Length: 274  Bit Score: 65.58  E-value: 2.26e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVrDLCRLFSGDVVLTARDVtrgqAAVQQLQAEGLSPRfhQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK05693   3 VVLITGCSSGIGRALA-DAFKAAGYEVWATARKA----EDVEALAAAGFTAV--QLDVNDGAALARLAEELEAEHGGLDV 75
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
3BHJ_A        86 LVNNAGiaFKVADP--TPFHIQAEVTMKTNFFGTRDVCTELLPLI-KPQGRVVNVSSIMSV 143
Cdd:PRK05693  76 LINNAG--YGAMGPllDGGVEAMRRQFETNVFAVVGVTRALFPLLrRSRGLVVNIGSVSGV 134
type1_17beta-HSD-like_SDR_c cd09806
human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, ...
6-146 2.26e-12

human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, classical (c) SDRs; 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical SDR subgroup includes human type 1 17beta-HSD, human retinol dehydrogenase 8, zebrafish photoreceptor associated retinol dehydrogenase type 2, and a chicken ovary-specific 17beta-hydroxysteroid dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187666 [Multi-domain]  Cd Length: 258  Bit Score: 65.17  E-value: 2.26e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIV----RDLCRLFSgdVVLTARDVTRGQAAVQQLQAE-GLSPRFHQLDIDDLQSIRALRDFLRKey 80
Cdd:cd09806   2 VVLITGCSSGIGLHLAvrlaSDPSKRFK--VYATMRDLKKKGRLWEAAGALaGGTLETLQLDVCDSKSVAAAVERVTE-- 77
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
3BHJ_A       81 GGLDVLVNNAGIAFKvadpTPFHIQAEVTMK----TNFFGTRDVCTELLPLIKP--QGRVVNVSSIMSVRAL 146
Cdd:cd09806  78 RHVDVLVCNAGVGLL----GPLEALSEDAMAsvfdVNVFGTVRMLQAFLPDMKRrgSGRILVTSSVGGLQGL 145
DHRS-12_like_SDR_c-like cd09808
human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like ...
8-272 2.26e-12

human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like SDRs; Classical SDR-like subgroup containing human DHRS-12/FLJ13639, the 36K protein of zebrafish CNS myelin, and related proteins. DHRS-12/FLJ13639 is expressed in neurons and oligodendrocytes in the human cerebral cortex. Proteins in this subgroup share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187668 [Multi-domain]  Cd Length: 255  Bit Score: 65.31  E-value: 2.26e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        8 LVTGGNKGIG----LAIVRDlcrlfSGDVVLTARDVTRGQAAVQQLQAEGLSPR--FHQLDIDDLQSIRALRDFLRKEYG 81
Cdd:cd09808   5 LITGANSGIGkaaaLAIAKR-----GGTVHMVCRNQTRAEEARKEIETESGNQNifLHIVDMSDPKQVWEFVEEFKEEGK 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       82 GLDVLVNNAGIAFKVADPTPFHIqaEVTMKTNFFGTRDVCTELLPLIK--PQGRVVNVSSimsvralkscSPELQQKFRS 159
Cdd:cd09808  80 KLHVLINNAGCMVNKRELTEDGL--EKNFATNTLGTYILTTHLIPVLEkeEDPRVITVSS----------GGMLVQKLNT 147
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      160 ETITEEE--LVGLMnKFVEDTKKGVHQKEGWpSSAYGVTKigvtvLSRIHarklseqrkgdkillnaccPGW-----VRT 232
Cdd:cd09808 148 NNLQSERtaFDGTM-VYAQNKRQQVIMTEQW-AKKHPEIH-----FSVMH-------------------PGWadtpaVRN 201
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*
3BHJ_A      233 DMAGPKAT-----KSPEEGAETPVYLALLPPDAEGPHGQFVSEKR 272
Cdd:cd09808 202 SMPDFHARfkdrlRSEEQGADTVVWLALSSAAAKAPSGRFYQDRK 246
PRK09072 PRK09072
SDR family oxidoreductase;
8-140 2.27e-12

SDR family oxidoreductase;


Pssm-ID: 236372 [Multi-domain]  Cd Length: 263  Bit Score: 65.35  E-value: 2.27e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         8 LVTGGNKGIGLAIVRDLCRLfSGDVVLTARDvtrgQAAVQQLQAEGLSPRFHQL---DIDDLQSIRALRDFLRkEYGGLD 84
Cdd:PRK09072   9 LLTGASGGIGQALAEALAAA-GARLLLVGRN----AEKLEALAARLPYPGRHRWvvaDLTSEAGREAVLARAR-EMGGIN 82
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        85 VLVNNAGIA-FK-VADPTPFHIQAEVTmkTNFFGTRDVCTELLPLIK--PQGRVVNVSSI 140
Cdd:PRK09072  83 VLINNAGVNhFAlLEDQDPEAIERLLA--LNLTAPMQLTRALLPLLRaqPSAMVVNVGST 140
mannonate_red_SDR_c cd08935
putative D-mannonate oxidoreductase, classical (c) SDR; D-mannonate oxidoreductase catalyzes ...
6-233 2.87e-12

putative D-mannonate oxidoreductase, classical (c) SDR; D-mannonate oxidoreductase catalyzes the NAD-dependent interconversion of D-mannonate and D-fructuronate. This subgroup includes Bacillus subtitils UxuB/YjmF, a putative D-mannonate oxidoreductase; the B. subtilis UxuB gene is part of a putative ten-gene operon (the Yjm operon) involved in hexuronate catabolism. Escherichia coli UxuB does not belong to this subgroup. This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187640 [Multi-domain]  Cd Length: 271  Bit Score: 65.17  E-value: 2.87e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:cd08935   7 VAVITGGTGVLGGAMARALAQA-GAKVAALGRNQEKGDKVAKEITALGGRAIALAADVLDRASLERAREEIVAQFGTVDI 85
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       86 LVNNAGIAFKVADPTPFHIQAEVTmkTNFFGTRDVCTEllplikpqgRVVNVSSIMSVRALKSCSPELQQKFRSETITee 165
Cdd:cd08935  86 LINGAGGNHPDATTDPEHYEPETE--QNFFDLDEEGWE---------FVFDLNLNGSFLPSQVFGKDMLEQKGGSIIN-- 152
                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
3BHJ_A      166 elVGLMNKFVEDTKkgvhqkegwpSSAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTD 233
Cdd:cd08935 153 --ISSMNAFSPLTK----------VPAYSAAKAAVSNFTQWLAVEFATT----GVRVNAIAPGFFVTP 204
SDR_c1 cd05355
classical (c) SDR, subgroup 1; These proteins are members of the classical SDR family, with a ...
6-144 2.98e-12

classical (c) SDR, subgroup 1; These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187613 [Multi-domain]  Cd Length: 270  Bit Score: 65.01  E-value: 2.98e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRGQAAV--QQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 82
Cdd:cd05355  28 KALITGGDSGIGRAVAIAFAR--EGaDVAINYLPEEEDDAEEtkKLIEEEGRKCLLIPGDLGDESFCRDLVKEVVKEFGK 105
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
3BHJ_A       83 LDVLVNNAG---IAFKVADPTPfhIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVR 144
Cdd:cd05355 106 LDILVNNAAyqhPQESIEDITT--EQLEKTFRTNIFSMFYLTKAALPHLKKGSSIINTTSVTAYK 168
PRK08643 PRK08643
(S)-acetoin forming diacetyl reductase;
6-234 3.63e-12

(S)-acetoin forming diacetyl reductase;


Pssm-ID: 181518 [Multi-domain]  Cd Length: 256  Bit Score: 64.75  E-value: 3.63e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVrdlCRLFSG--DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:PRK08643   4 VALVTGAGQGIGFAIA---KRLVEDgfKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        84 DVLVNNAGIA--FKVADPTP--FHIQAEVTMKTNFFGTRdVCTELLPLIKPQGRVVNVSSimsvRALKSCSPELqqkfrs 159
Cdd:PRK08643  81 NVVVNNAGVAptTPIETITEeqFDKVYNINVGGVIWGIQ-AAQEAFKKLGHGGKIINATS----QAGVVGNPEL------ 149
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
3BHJ_A       160 etiteeelvglmnkfvedtkkgvhqkegwpsSAYGVTKIGVTVLSRIHARKLSEqrkgDKILLNACCPGWVRTDM 234
Cdd:PRK08643 150 -------------------------------AVYSSTKFAVRGLTQTAARDLAS----EGITVNAYAPGIVKTPM 189
PRK08628 PRK08628
SDR family oxidoreductase;
5-92 4.08e-12

SDR family oxidoreductase;


Pssm-ID: 181508 [Multi-domain]  Cd Length: 258  Bit Score: 64.59  E-value: 4.08e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         5 HVALVTGGNKGIGLAIVRDLCRlfSGDV-VLTARDvTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:PRK08628   8 KVVIVTGGASGIGAAISLRLAE--EGAIpVIFGRS-APDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRI 84

                 ....*....
3BHJ_A        84 DVLVNNAGI 92
Cdd:PRK08628  85 DGLVNNAGV 93
BKR_3_SDR_c cd05345
putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) ...
6-144 4.36e-12

putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR; This subgroup includes the putative Brucella melitensis biovar Abortus 2308 BKR, FabG, Mesorhizobium loti MAFF303099 FabG, and other classical SDRs. BKR, a member of the SDR family, catalyzes the NADPH-dependent reduction of acyl carrier protein in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of 4 elongation steps, which are repeated to extend the fatty acid chain thru the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I Fas utilizes one or 2 multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187603 [Multi-domain]  Cd Length: 248  Bit Score: 64.33  E-value: 4.36e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRdlcrLFSGD---VVLTARDVTRGQAAVQQLQAEGLsprFHQLDIDDLQSIRALRDFLRKEYGG 82
Cdd:cd05345   7 VAIVTGAGSGFGEGIAR----RFAQEgarVVIADINADGAERVAADIGEAAI---AIQADVTKRADVEAMVEAALSKFGR 79
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
3BHJ_A       83 LDVLVNNAGIAFKVA-----DPTPFHIQAEVTMKTNFFGTRdvctELLPLIKPQGRVV--NVSSIMSVR 144
Cdd:cd05345  80 LDILVNNAGITHRNKpmlevDEEEFDRVFAVNVKSIYLSAQ----ALVPHMEEQGGGViiNIASTAGLR 144
PRK12828 PRK12828
short chain dehydrogenase; Provisional
6-234 5.85e-12

short chain dehydrogenase; Provisional


Pssm-ID: 237220 [Multi-domain]  Cd Length: 239  Bit Score: 64.05  E-value: 5.85e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLspRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK12828   9 VVAITGGFGGLGRATAAWLAAR-GARVALIGRGAAPLSQTLPGVPADAL--RIGGIDLVDPQAARRAVDEVNRQFGRLDA 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        86 LVNNAGiAF---KVADPTPfhIQAEVTMKTNFFGTRDVCTELLP-LIK-PQGRVVNVSSIMSVRAlkscspelqqkfrse 160
Cdd:PRK12828  86 LVNIAG-AFvwgTIADGDA--DTWDRMYGVNVKTTLNASKAALPaLTAsGGGRIVNIGAGAALKA--------------- 147
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
3BHJ_A       161 titeeelvglmnkfvedtkkgvhqKEGWpsSAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTDM 234
Cdd:PRK12828 148 ------------------------GPGM--GAYAAAKAGVARLTEALAAELLDR----GITVNAVLPSIIDTPP 191
PRK12935 PRK12935
acetoacetyl-CoA reductase; Provisional
6-234 6.36e-12

acetoacetyl-CoA reductase; Provisional


Pssm-ID: 183832 [Multi-domain]  Cd Length: 247  Bit Score: 63.87  E-value: 6.36e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK12935   8 VAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFGKVDI 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        86 LVNNAGI----AFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPliKPQGRVVNVSSIMSvralkscspelqqkfrset 161
Cdd:PRK12935  88 LVNNAGItrdrTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITE--AEEGRIISISSIIG------------------- 146
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
3BHJ_A       162 iteeelvglmnkfvedtkkgvhQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTDM 234
Cdd:PRK12935 147 ----------------------QAGGFGQTNYSAAKAGMLGFTKSLALELAKT----NVTVNAICPGFIDTEM 193
PRK06953 PRK06953
SDR family oxidoreductase;
5-245 6.96e-12

SDR family oxidoreductase;


Pssm-ID: 180774 [Multi-domain]  Cd Length: 222  Bit Score: 63.55  E-value: 6.96e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         5 HVALVTGGNKGIGLAIVRDLCRlfSGD-VVLTARDvtrgQAAVQQLQAegLSPRFHQLDIDDLQSIRALRDFLRKEygGL 83
Cdd:PRK06953   2 KTVLIVGASRGIGREFVRQYRA--DGWrVIATARD----AAALAALQA--LGAEALALDVADPASVAGLAWKLDGE--AL 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        84 DVLVNNAGI--AFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIK-PQGRVVNVSSIMSvralkscspelqqkfrse 160
Cdd:PRK06953  72 DAAVYVAGVygPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEaAGGVLAVLSSRMG------------------ 133
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       161 titeeeLVGlmnkfvedtkkGVHQKEGWpssAYGVTKIGVTVLSRIharkLSEQRKgdkillNACC----PGWVRTDMAG 236
Cdd:PRK06953 134 ------SIG-----------DATGTTGW---LYRASKAALNDALRA----ASLQAR------HATCialhPGWVRTDMGG 183

                 ....*....
3BHJ_A       237 PKATKSPEE 245
Cdd:PRK06953 184 AQAALDPAQ 192
R1PA_ADH_SDR_c cd08943
rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs; This family has ...
5-138 7.59e-12

rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs; This family has bifunctional proteins with an N-terminal aldolase and a C-terminal classical SDR domain. One member is identified as a rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. The SDR domain has a canonical SDR glycine-rich NAD(P) binding motif and a match to the characteristic active site triad. However, it lacks an upstream active site Asn typical of SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187647 [Multi-domain]  Cd Length: 250  Bit Score: 63.57  E-value: 7.59e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        5 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLtarDVtrgQAAVQQLQAEGLSPRFH----QLDIDDLQSIRALRDFLRKEY 80
Cdd:cd08943   2 KVALVTGGASGIGLAIAKRLAAEGAAVVVA---DI---DPEIAEKVAEAAQGGPRalgvQCDVTSEAQVQSAFEQAVLEF 75
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
3BHJ_A       81 GGLDVLVNNAGIAFkvadPTPFhiqAEVTMKT-------NFFGTRDVCTELLPLIKPQGR----VVNVS 138
Cdd:cd08943  76 GGLDIVVSNAGIAT----SSPI---AETSLEDwnrsmdiNLTGHFLVSREAFRIMKSQGIggniVFNAS 137
PRK08265 PRK08265
short chain dehydrogenase; Provisional
6-90 1.24e-11

short chain dehydrogenase; Provisional


Pssm-ID: 236209 [Multi-domain]  Cd Length: 261  Bit Score: 63.10  E-value: 1.24e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlFSGDVVLTARDVTRGQAAVQQLqaeGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK08265   8 VAIVTGGATLIGAAVARALVA-AGARVAIVDIDADNGAAVAASL---GERARFIATDITDDAAIERAVATVVARFGRVDI 83

                 ....*
3BHJ_A        86 LVNNA 90
Cdd:PRK08265  84 LVNLA 88
PRK07062 PRK07062
SDR family oxidoreductase;
6-142 1.25e-11

SDR family oxidoreductase;


Pssm-ID: 180818 [Multi-domain]  Cd Length: 265  Bit Score: 63.14  E-value: 1.25e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLcrLFSG-DVVLTARDVTRGQAAVQQL-----QAEGLSPRFHQLDIDDlqsIRALRDFLRKE 79
Cdd:PRK07062  10 VAVVTGGSSGIGLATVELL--LEAGaSVAICGRDEERLASAEARLrekfpGARLLAARCDVLDEAD---VAAFAAAVEAR 84
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
3BHJ_A        80 YGGLDVLVNNAGIAFKV--ADPTPFHIQAEVTMKtnFFGTRDVCTELLPLIK--PQGRVVNVSSIMS 142
Cdd:PRK07062  85 FGGVDMLVNNAGQGRVStfADTTDDAWRDELELK--YFSVINPTRAFLPLLRasAAASIVCVNSLLA 149
3KS_SDR_c cd08941
3-keto steroid reductase, classical (c) SDRs; 3-keto steroid reductase (in concert with other ...
6-142 1.37e-11

3-keto steroid reductase, classical (c) SDRs; 3-keto steroid reductase (in concert with other enzymes) catalyzes NADP-dependent sterol C-4 demethylation, as part of steroid biosynthesis. 3-keto reductase is a classical SDR, with a well conserved canonical active site tetrad and fairly well conserved characteristic NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187645 [Multi-domain]  Cd Length: 290  Bit Score: 63.56  E-value: 1.37e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVrdlCRLFSGD-------VVLTARDVTRGQAAVQQLQAeglsprFH----------QLDIDDLQS 68
Cdd:cd08941   3 VVLVTGANSGLGLAIC---ERLLAEDdenpeltLILACRNLQRAEAACRALLA------SHpdarvvfdyvLVDLSNMVS 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       69 IRALRDFLRKEYGGLDVLVNNAGI----------AFKVADPTPFHIQAEVTMK-----------------------TNFF 115
Cdd:cd08941  74 VFAAAKELKKRYPRLDYLYLNAGImpnpgidwigAIKEVLTNPLFAVTNPTYKiqaegllsqgdkatedglgevfqTNVF 153
                       170       180       190
                ....*....|....*....|....*....|
3BHJ_A      116 GTRDVCTELLPLIKPQ---GRVVNVSSIMS 142
Cdd:cd08941 154 GHYYLIRELEPLLCRSdggSQIIWTSSLNA 183
A3DFK9-like_SDR_c cd09761
Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, ...
6-251 1.56e-11

Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, classical (c) SDRs; This subgroup includes a putative carbohydrate or polyalcohol metabolizing SDR (A3DFK9) from Clostridium thermocellum. Its members have a TGXXXGXG classical-SDR glycine-rich NAD-binding motif, and some have a canonical SDR active site tetrad (A3DFK9 lacks the upstream Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187662 [Multi-domain]  Cd Length: 242  Bit Score: 62.60  E-value: 1.56e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLcrLFSGD-VVLTARDVTRGqaaVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:cd09761   3 VAIVTGGGHGIGKQICLDF--LEAGDkVVFADIDEERG---ADFAEAEGPNLFFVHGDVADETLVKFVVYAMLEKLGRID 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       85 VLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDV---CTEllPLIKPQGRVVNvssIMSVRAlkscspelqqkFRSET 161
Cdd:cd09761  78 VLVNNAARGSKGILSSLLLEEWDRILSVNLTGPYELsryCRD--ELIKNKGRIIN---IASTRA-----------FQSEP 141
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      162 ITEeelvglmnkfvedtkkgvhqkegwpssAYGVTKIGVTVLSRIHARKLseqrkGDKILLNACCPGWVRTDMAGPK--A 239
Cdd:cd09761 142 DSE---------------------------AYAASKGGLVALTHALAMSL-----GPDIRVNCISPGWINTTEQQEFtaA 189
                       250
                ....*....|..
3BHJ_A      240 TKSPEEGAETPV 251
Cdd:cd09761 190 PLTQEDHAQHPA 201
PRK06172 PRK06172
SDR family oxidoreductase;
6-247 1.69e-11

SDR family oxidoreductase;


Pssm-ID: 180440 [Multi-domain]  Cd Length: 253  Bit Score: 62.85  E-value: 1.69e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK06172   9 VALVTGGAAGIGRATALAFARE-GAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRLDY 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        86 LVNNAGI---AFKVADPTPFHIQAevTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMSvralkscspelqqkfrse 160
Cdd:PRK06172  88 AFNNAGIeieQGRLAEGSEAEFDA--IMGVNVKGVWLCMKYQIPLMLAQggGAIVNTASVAG------------------ 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       161 titeeeLVGLMNkfvedtkkgvhqkegwpSSAYGVTKIGVTVLSRIHArklSEQRKGdKILLNACCPGWVRTDMAGPKAT 240
Cdd:PRK06172 148 ------LGAAPK-----------------MSIYAASKHAVIGLTKSAA---IEYAKK-GIRVNAVCPAVIDTDMFRRAYE 200

                 ....*..
3BHJ_A       241 KSPEEGA 247
Cdd:PRK06172 201 ADPRKAE 207
PRK06935 PRK06935
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;
6-237 1.95e-11

2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;


Pssm-ID: 180761 [Multi-domain]  Cd Length: 258  Bit Score: 62.45  E-value: 1.95e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDvTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK06935  17 VAIVTGGNTGLGQGYAVALAK--AGaDIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGKID 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        85 VLVNNAGI-------AFKVADptpFHIQAEVTMKTNFFGTRDVCTELLPliKPQGRVVNVSSIMSVRAlkscspelqqkf 157
Cdd:PRK06935  94 ILVNNAGTirrapllEYKDED---WNAVMDINLNSVYHLSQAVAKVMAK--QGSGKIINIASMLSFQG------------ 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       158 rsetiteeelvglmNKFVedtkkgvhqkegwpsSAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTDMAGP 237
Cdd:PRK06935 157 --------------GKFV---------------PAYTASKHGVAGLTKAFANELAAY----NIQVNAIAPGYIKTANTAP 203
fabG PRK06077
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
6-234 2.25e-11

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 235693 [Multi-domain]  Cd Length: 252  Bit Score: 62.43  E-value: 2.25e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK06077   8 VVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGVADI 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        86 LVNNAGIA----FKVADPTPFHIQAEVTMKTNFFgtrdvCT-ELLPLIKPQGRVVNVSSIMSVRAlkscspelqqkfrse 160
Cdd:PRK06077  88 LVNNAGLGlfspFLNVDDKLIDKHISTDFKSVIY-----CSqELAKEMREGGAIVNIASVAGIRP--------------- 147
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
3BHJ_A       161 titeeeLVGLmnkfvedtkkgvhqkegwpsSAYGVTKIGVTVLSRIHARKLSEqrkgdKILLNACCPGWVRTDM 234
Cdd:PRK06077 148 ------AYGL--------------------SIYGAMKAAVINLTKYLALELAP-----KIRVNAIAPGFVKTKL 190
PRK08219 PRK08219
SDR family oxidoreductase;
6-139 2.30e-11

SDR family oxidoreductase;


Pssm-ID: 181298 [Multi-domain]  Cd Length: 227  Bit Score: 61.87  E-value: 2.30e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSGDVVLTARDVTRGQAAVQQL-QAEGLsprfhQLDIDDLQSIRALRDFLrkeyGGLD 84
Cdd:PRK08219   5 TALITGASRGIGAAIARELAP--THTLLLGGRPAERLDELAAELpGATPF-----PVDLTDPEAIAAAVEQL----GRLD 73
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
3BHJ_A        85 VLVNNAGIAF--KVADPTPfhIQAEVTMKTNFFGTRDVCTELLPLIK-PQGRVVNVSS 139
Cdd:PRK08219  74 VLVHNAGVADlgPVAESTV--DEWRATLEVNVVAPAELTRLLLPALRaAHGHVVFINS 129
KR_2_SDR_x cd08953
ketoreductase (KR), subgroup 2, complex (x) SDRs; Ketoreductase, a module of the multidomain ...
5-92 3.78e-11

ketoreductase (KR), subgroup 2, complex (x) SDRs; Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187656 [Multi-domain]  Cd Length: 436  Bit Score: 62.77  E-value: 3.78e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        5 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTAR-----DVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKE 79
Cdd:cd08953 206 GVYLVTGGAGGIGRALARALARRYGARLVLLGRsplppEEEWKAQTLAALEALGARVLYISADVTDAAAVRRLLEKVRER 285
                        90
                ....*....|...
3BHJ_A       80 YGGLDVLVNNAGI 92
Cdd:cd08953 286 YGAIDGVIHAAGV 298
PRK06701 PRK06701
short chain dehydrogenase; Provisional
6-250 5.59e-11

short chain dehydrogenase; Provisional


Pssm-ID: 235853 [Multi-domain]  Cd Length: 290  Bit Score: 61.59  E-value: 5.59e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGlaivRDLCRLFS---GDVVLT----ARDVTRGQAAVQqlqAEGLSPRFHQLDIDDLQSIRALRDFLRK 78
Cdd:PRK06701  48 VALITGGDSGIG----RAVAVLFAkegADIAIVyldeHEDANETKQRVE---KEGVKCLLIPGDVSDEAFCKDAVEETVR 120
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        79 EYGGLDVLVNNAgiAFK-----VADPTPFHIqaEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRAlkscSPEL 153
Cdd:PRK06701 121 ELGRLDILVNNA--AFQypqqsLEDITAEQL--DKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEG----NETL 192
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       154 QQkfrsetiteeelvglmnkfvedtkkgvhqkegwpssaYGVTKIGvtvlsrIHA--RKLSEQRKGDKILLNACCPGWVR 231
Cdd:PRK06701 193 ID-------------------------------------YSATKGA------IHAftRSLAQSLVQKGIRVNAVAPGPIW 229
                        250       260
                 ....*....|....*....|...
3BHJ_A       232 TDMaGPkATKSPEE----GAETP 250
Cdd:PRK06701 230 TPL-IP-SDFDEEKvsqfGSNTP 250
Ycik_SDR_c cd05340
Escherichia coli K-12 YCIK-like, classical (c) SDRs; Escherichia coli K-12 YCIK and related ...
6-266 5.89e-11

Escherichia coli K-12 YCIK-like, classical (c) SDRs; Escherichia coli K-12 YCIK and related proteins have a canonical classical SDR nucleotide-binding motif and active site tetrad. They are predicted oxoacyl-(acyl carrier protein/ACP) reductases. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187599 [Multi-domain]  Cd Length: 236  Bit Score: 61.05  E-value: 5.89e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRlFSGDVVLTARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDL--QSIRALRDFLRKEYGG 82
Cdd:cd05340   6 IILVTGASDGIGREAALTYAR-YGATVILLGRNEEKLRQVADHINEEGgRQPQWFILDLLTCtsENCQQLAQRIAVNYPR 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       83 LDVLVNNAGIafkVADPTPFHIQ--------AEVTMKTNFFGTRdvctELLPLIKPqgrvvnvssimsvralkscSPELQ 154
Cdd:cd05340  85 LDGVLHNAGL---LGDVCPLSEQnpqvwqdv*QVNVNATFMLTQ----ALLPLLLK-------------------SDAGS 138
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      155 QKFRSETIteeelvglmnkfvedtkkGVHQKEGWpsSAYGVTKIGVTVLSRIharkLSEQRKGDKILLNACCPGWVRTDM 234
Cdd:cd05340 139 LVFTSSSV------------------GRQGRANW--GAYAVSKFATEGL*QV----LADEYQQRNLRVNCINPGGTRTAM 194
                       250       260       270
                ....*....|....*....|....*....|....*....
3BHJ_A      235 -------AGPKATKSPEEgaETPVYLALLPPDAEGPHGQ 266
Cdd:cd05340 195 rasafptEDPQKLKTPAD--IMPLYLWLMGDDSRRKTGM 231
7_alpha_HSDH_SDR_c cd05365
7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs; This bacterial ...
6-259 5.90e-11

7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs; This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187623 [Multi-domain]  Cd Length: 242  Bit Score: 61.05  E-value: 5.90e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRlFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:cd05365   1 VAIVTGGAAGIGKAIAGTLAK-AGASVVIADLKSEGAEAVAAAIQQAGGQAIGLECNVTSEQDLEAVVKATVSQFGGITI 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       86 LVNNAGIAFKVADPTPFHI-QAEVTMKTNFFGtrdvctellplikpqgrvvnvssimSVRALKSCSPELQQKFRSETITE 164
Cdd:cd05365  80 LVNNAGGGGPKPFDMPMTEeDFEWAFKLNLFS-------------------------AFRLSQLCAPHMQKAGGGAILNI 134
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      165 EELVGlMNKFVEdtkkgvhqkegwpSSAYGVTKIGVTVLSRIHARKLSEqrkgDKILLNACCPGWVRTDMAGPKATKSPE 244
Cdd:cd05365 135 SSMSS-ENKNVR-------------IAAYGSSKAAVNHMTRNLAFDLGP----KGIRVNAVAPGAVKTDALASVLTPEIE 196
                       250
                ....*....|....*..
3BHJ_A      245 EG--AETPVYLALLPPD 259
Cdd:cd05365 197 RAmlKHTPLGRLGEPED 213
PRK07825 PRK07825
short chain dehydrogenase; Provisional
6-146 6.91e-11

short chain dehydrogenase; Provisional


Pssm-ID: 181136 [Multi-domain]  Cd Length: 273  Bit Score: 61.11  E-value: 6.91e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVtrgqaAVQQLQAEGLSP-RFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK07825   7 VVAITGGARGIGLATARALAAL-GARVAIGDLDE-----ALAKETAAELGLvVGGPLDVTDPASFAAFLDAVEADLGPID 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
3BHJ_A        85 VLVNNAGI----AFKVADPTPFHIQAEVTMKTNFFGTRDVctelLPLIKPQGR--VVNVSSIMSVRAL 146
Cdd:PRK07825  81 VLVNNAGVmpvgPFLDEPDAVTRRILDVNVYGVILGSKLA----APRMVPRGRghVVNVASLAGKIPV 144
PRK06125 PRK06125
short chain dehydrogenase; Provisional
7-91 8.69e-11

short chain dehydrogenase; Provisional


Pssm-ID: 235703 [Multi-domain]  Cd Length: 259  Bit Score: 60.83  E-value: 8.69e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAivrdLCRLFSGD---VVLTARDVTRGQAAVQQLQAE-GLSPRFHQLDIDDLQSiralRDFLRKEYGG 82
Cdd:PRK06125  10 VLITGASKGIGAA----AAEAFAAEgchLHLVARDADALEALAADLRAAhGVDVAVHALDLSSPEA----REQLAAEAGD 81

                 ....*....
3BHJ_A        83 LDVLVNNAG 91
Cdd:PRK06125  82 IDILVNNAG 90
DHB_DH-like_SDR_c cd08937
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR; ...
6-144 9.23e-11

1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR; DHB DH (aka 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase) catalyzes the NAD-dependent conversion of 1,2-dihydroxycyclohexa-3,4-diene carboxylate to a catechol. This subgroup also contains Pseudomonas putida F1 CmtB, 2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase, the second enzyme in the pathway for catabolism of p-cumate catabolism. This subgroup shares the glycine-rich NAD-binding motif of the classical SDRs and shares the same catalytic triad; however, the upstream Asn implicated in cofactor binding or catalysis in other SDRs is generally substituted by a Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187642 [Multi-domain]  Cd Length: 256  Bit Score: 60.62  E-value: 9.23e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDvTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:cd08937   6 VVVVTGAAQGIGRGVAERLAGE-GARVLLVDRS-ELVHEVLAEILAAGDAAHVHTADLETYAGAQGVVRAAVERFGRVDV 83
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
3BHJ_A       86 LVNNAG--IAFKVADPTPF-HIQAEVtmKTNFFGTRDVCTELLP--LIKPQGRVVNVSSImSVR 144
Cdd:cd08937  84 LINNVGgtIWAKPYEHYEEeQIEAEI--RRSLFPTLWCCRAVLPhmLERQQGVIVNVSSI-ATR 144
RhlG_SDR_c cd08942
RhlG and related beta-ketoacyl reductases, classical (c) SDRs; Pseudomonas aeruginosa RhlG is ...
6-254 1.08e-10

RhlG and related beta-ketoacyl reductases, classical (c) SDRs; Pseudomonas aeruginosa RhlG is an SDR-family beta-ketoacyl reductase involved in Rhamnolipid biosynthesis. RhlG is similar to but distinct from the FabG family of beta-ketoacyl-acyl carrier protein (ACP) of type II fatty acid synthesis. RhlG and related proteins are classical SDRs, with a canonical active site tetrad and glycine-rich NAD(P)-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187646 [Multi-domain]  Cd Length: 250  Bit Score: 60.57  E-value: 1.08e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGlSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:cd08942   8 IVLVTGGSRGIGRMIAQGFLEA-GARVIISARKAEACADAAEELSAYG-ECIAIPADLSSEEGIEALVARVAERSDRLDV 85
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       86 LVNNAGIAFKVA-DPTP---FHIQAEVTMKTNFFGTrdvcTELLPLIKPQG------RVVNVSSIMSVRAlkscspelqq 155
Cdd:cd08942  86 LVNNAGATWGAPlEAFPesgWDKVMDINVKSVFFLT----QALLPLLRAAAtaenpaRVINIGSIAGIVV---------- 151
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      156 kfrsetiteeelvglmnkfvedtkkgvhqkEGWPSSAYGVTKIGVTVLSrihaRKLSEQRKGDKILLNACCPG------- 228
Cdd:cd08942 152 ------------------------------SGLENYSYGASKAAVHQLT----RKLAKELAGEHITVNAIAPGrfpskmt 197
                       250       260       270
                ....*....|....*....|....*....|....*.
3BHJ_A      229 -WVRTDMAGPKATK---------SPEEGAETPVYLA 254
Cdd:cd08942 198 aFLLNDPAALEAEEksiplgrwgRPEDMAGLAIMLA 233
fabG PRK08261
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
6-92 1.40e-10

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 236207 [Multi-domain]  Cd Length: 450  Bit Score: 61.01  E-value: 1.40e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSGDVVLtARDVTRGQAAVQQLqAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK08261 212 VALVTGAARGIGAAIAEVLAR--DGAHVV-CLDVPAAGEALAAV-ANRVGGTALALDITAPDAPARIAEHLAERHGGLDI 287

                 ....*..
3BHJ_A        86 LVNNAGI 92
Cdd:PRK08261 288 VVHNAGI 294
SDR_c8 cd08930
classical (c) SDR, subgroup 8; This subgroup has a fairly well conserved active site tetrad ...
6-228 1.51e-10

classical (c) SDR, subgroup 8; This subgroup has a fairly well conserved active site tetrad and domain size of the classical SDRs, but has an atypical NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187635 [Multi-domain]  Cd Length: 250  Bit Score: 60.04  E-value: 1.51e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLcRLFSGDVVLTARDVTRGQAAVQQLQAEGlSPRFH--QLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:cd08930   4 IILITGAAGLIGKAFCKAL-LSAGARLILADINAPALEQLKEELTNLY-KNRVIalELDITSKESIKELIESYLEKFGRI 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       84 DVLVNNAGIAFKVaDPTPFH------IQAEVTMktNFFGTRDVCTELLPLIKPQGR--VVNVSSIMSVRAlkscsPelqq 155
Cdd:cd08930  82 DILINNAYPSPKV-WGSRFEefpyeqWNEVLNV--NLGGAFLCSQAFIKLFKKQGKgsIINIASIYGVIA-----P---- 149
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
3BHJ_A      156 KFRSETITEeelvglMNKFVEdtkkgvhqkegwpssaYGVTKIGVTVLSRIHARKLSeqrkGDKILLNACCPG 228
Cdd:cd08930 150 DFRIYENTQ------MYSPVE----------------YSVIKAGIIHLTKYLAKYYA----DTGIRVNAISPG 196
PRK05993 PRK05993
SDR family oxidoreductase;
8-147 1.75e-10

SDR family oxidoreductase;


Pssm-ID: 180343 [Multi-domain]  Cd Length: 277  Bit Score: 60.04  E-value: 1.75e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         8 LVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDvtrgQAAVQQLQAEGLSPrfHQLDIDDLQSIRALRD-FLRKEYGGLDV 85
Cdd:PRK05993   8 LITGCSSGIGAYCARALQS--DGwRVFATCRK----EEDVAALEAEGLEA--FQLDYAEPESIAALVAqVLELSGGRLDA 79
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
3BHJ_A        86 LVNNA--GIAFKVAD-PT-PFHIQAEvtmkTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMSVRALK 147
Cdd:PRK05993  80 LFNNGayGQPGAVEDlPTeALRAQFE----ANFFGWHDLTRRVIPVMRKQgqGRIVQCSSILGLVPMK 143
secoisolariciresinol-DH_like_SDR_c cd05326
secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs; ...
6-254 2.11e-10

secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs; Podophyllum secoisolariciresinol-DH is a homo tetrameric, classical SDR that catalyzes the NAD-dependent conversion of (-)-secoisolariciresinol to (-)-matairesinol via a (-)-lactol intermediate. (-)-Matairesinol is an intermediate to various 8'-lignans, including the cancer-preventive mammalian lignan, and those involved in vascular plant defense. This subgroup also includes rice momilactone A synthase which catalyzes the conversion of 3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide into momilactone A, Arabidopsis ABA2 which during abscisic acid (ABA) biosynthesis, catalyzes the conversion of xanthoxin to abscisic aldehyde and, maize Tasselseed2 which participate in the maize sex determination pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187587 [Multi-domain]  Cd Length: 249  Bit Score: 59.39  E-value: 2.11e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRlFSGDVVLTARDVTRGQAAVQQLQAEGLSprFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:cd05326   6 VAIITGGASGIGEATARLFAK-HGARVVIADIDDDAGQAVAAELGDPDIS--FVHCDVTVEADVRAAVDTAVARFGRLDI 82
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       86 LVNNAGIafkVADPTP---------FHIQAEVTMKTNFFGTRDVCTELLPliKPQGRVVNVSSIMSVRAlkscspelqqk 156
Cdd:cd05326  83 MFNNAGV---LGAPCYsiletsleeFERVLDVNVYGAFLGTKHAARVMIP--AKKGSIVSVASVAGVVG----------- 146
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      157 frsetiteeelvglmnkfvedtkkgvhqkeGWPSSAYGVTKIGVTVLSRIHARKLSEQRkgdkILLNACCPGWVRTDMAG 236
Cdd:cd05326 147 ------------------------------GLGPHAYTASKHAVLGLTRSAATELGEHG----IRVNCVSPYGVATPLLT 192
                       250       260       270
                ....*....|....*....|....*....|....*...
3BHJ_A      237 -------------------PKATK-SPEEGAETPVYLA 254
Cdd:cd05326 193 agfgvedeaieeavrgaanLKGTAlRPEDIAAAVLYLA 230
XR_like_SDR_c cd05351
xylulose reductase-like, classical (c) SDRs; Members of this subgroup include proteins ...
6-234 2.65e-10

xylulose reductase-like, classical (c) SDRs; Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser).


Pssm-ID: 187609 [Multi-domain]  Cd Length: 244  Bit Score: 59.02  E-value: 2.65e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRlfSGDVVLTardVTRGQAAVQQLQAE--GLSPRfhQLDIDDLQSIRalrdFLRKEYGGL 83
Cdd:cd05351   9 RALVTGAGKGIGRATVKALAK--AGARVVA---VSRTQADLDSLVREcpGIEPV--CVDLSDWDATE----EALGSVGPV 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       84 DVLVNNAGIA----FKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPqGRVVNVSSIMSVRALKScspelqqkfrs 159
Cdd:cd05351  78 DLLVNNAAVAilqpFLEVTKEAFDRSFDVNVRAVIHVSQIVARGMIARGVP-GSIVNVSSQASQRALTN----------- 145
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
3BHJ_A      160 etiteeelvglmnkfvedtkkgvhqkegwpSSAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTDM 234
Cdd:cd05351 146 ------------------------------HTVYCSTKAALDMLTKVMALELGPH----KIRVNSVNPTVVMTDM 186
PRK08263 PRK08263
short chain dehydrogenase; Provisional
6-140 2.70e-10

short chain dehydrogenase; Provisional


Pssm-ID: 181334 [Multi-domain]  Cd Length: 275  Bit Score: 59.67  E-value: 2.70e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLcrLFSGD-VVLTARDVTRGQAAVQQLQaEGLSPRfhQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK08263   5 VWFITGASRGFGRAWTEAA--LERGDrVVATARDTATLADLAEKYG-DRLLPL--ALDVTDRAAVFAAVETAVEHFGRLD 79
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
3BHJ_A        85 VLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSI 140
Cdd:PRK08263  80 IVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQrsGHIIQISSI 137
PRK06180 PRK06180
short chain dehydrogenase; Provisional
8-243 3.68e-10

short chain dehydrogenase; Provisional


Pssm-ID: 180446 [Multi-domain]  Cd Length: 277  Bit Score: 59.16  E-value: 3.68e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         8 LVTGGNKGIGLAIVRDLcrLFSGD-VVLTARDvtrgQAAVQQLqAEGLSPRFH--QLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK06180   8 LITGVSSGFGRALAQAA--LAAGHrVVGTVRS----EAARADF-EALHPDRALarLLDVTDFDAIDAVVADAEATFGPID 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        85 VLVNNAGI----AFKVADPTPFHIQAEVtmktNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMSVRALKSCSPELQQKFR 158
Cdd:PRK06180  81 VLVNNAGYghegAIEESPLAEMRRQFEV----NVFGAVAMTKAVLPGMRARrrGHIVNITSMGGLITMPGIGYYCGSKFA 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       159 SETITE---EELVGLmnkfvedtkkGVHqkegwpssaygVTkigvtvlsriharklseqrkgdkillnACCPGWVRTDMA 235
Cdd:PRK06180 157 LEGISEslaKEVAPF----------GIH-----------VT---------------------------AVEPGSFRTDWA 188

                 ....*...
3BHJ_A       236 GPKATKSP 243
Cdd:PRK06180 189 GRSMVRTP 196
PRK07832 PRK07832
SDR family oxidoreductase;
7-146 4.52e-10

SDR family oxidoreductase;


Pssm-ID: 181139 [Multi-domain]  Cd Length: 272  Bit Score: 58.90  E-value: 4.52e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVRDLCRlFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQ-LDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK07832   3 CFVTGAASGIGRATALRLAA-QGAELFLTDRDADGLAQTVADARALGGTVPEHRaLDISDYDAVAAFAADIHAAHGSMDV 81
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
3BHJ_A        86 LVNNAGIAF--KVADPTpfHIQAEVTMKTNFFGTRDVCTELLPLIKPQGR---VVNVSSIMSVRAL 146
Cdd:PRK07832  82 VMNIAGISAwgTVDRLT--HEQWRRMVDVNLMGPIHVIETFVPPMVAAGRgghLVNVSSAAGLVAL 145
DH-DHB-DH_SDR_c cd05331
2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs; 2,3 dihydro-2,3 ...
7-139 4.62e-10

2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs; 2,3 dihydro-2,3 dihydrozybenzoate dehydrogenase shares the characteristics of the classical SDRs. This subgroup includes Escherichai coli EntA which catalyzes the NAD+-dependent oxidation of 2,3-dihydro-2,3-dihydroxybenzoate to 2,3-dihydroxybenzoate during biosynthesis of the siderophore Enterobactin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187592 [Multi-domain]  Cd Length: 244  Bit Score: 58.63  E-value: 4.62e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        7 ALVTGGNKGIGLAIVRdlcRLFSGDVVLTARDVtrgqaAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVL 86
Cdd:cd05331   1 VIVTGAAQGIGRAVAR---HLLQAGATVIALDL-----PFVLLLEYGDPLRLTPLDVADAAAVREVCSRLLAEHGPIDAL 72
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
3BHJ_A       87 VNNAGIaFKVADPTPFHIQA-EVTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSS 139
Cdd:cd05331  73 VNCAGV-LRPGATDPLSTEDwEQTFAVNVTGVFNLLQAVAPHMKDRrtGAIVTVAS 127
fabG PRK07792
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
5-268 5.90e-10

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 181120 [Multi-domain]  Cd Length: 306  Bit Score: 58.64  E-value: 5.90e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         5 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDfLRKEYGGLD 84
Cdd:PRK07792  13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVA-TAVGLGGLD 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        85 VLVNNAGIafkVADPTPFHIQAE-------VTMKTNFFGTRDVCTELLPLIKPQ-----GRVVNVSSimsvralkscspe 152
Cdd:PRK07792  92 IVVNNAGI---TRDRMLFNMSDEewdaviaVHLRGHFLLTRNAAAYWRAKAKAAggpvyGRIVNTSS------------- 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       153 lqqkfrsetitEEELVGlmnkfvedtkkgvhqKEGWPSsaYGVTKIGVTVLSRIHARKLSeqRKGdkILLNACCPGwVRT 232
Cdd:PRK07792 156 -----------EAGLVG---------------PVGQAN--YGAAKAGITALTLSAARALG--RYG--VRANAICPR-ART 202
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
3BHJ_A       233 DM--------AGPKATK----SPEEGAETPVYLAllPPDAEGPHGQ-FV 268
Cdd:PRK07792 203 AMtadvfgdaPDVEAGGidplSPEHVVPLVQFLA--SPAAAEVNGQvFI 249
PRK08267 PRK08267
SDR family oxidoreductase;
8-139 7.82e-10

SDR family oxidoreductase;


Pssm-ID: 236210 [Multi-domain]  Cd Length: 260  Bit Score: 58.03  E-value: 7.82e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         8 LVTGGNKGIGLAIVRdlcrLFSGD---VVLTARDvtrgQAAVQQLQAE--GLSPRFHQLDIDDLQSI-RALRDFLRKEYG 81
Cdd:PRK08267   5 FITGAASGIGRATAL----LFAAEgwrVGAYDIN----EAGLAALAAElgAGNAWTGALDVTDRAAWdAALADFAAATGG 76
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
3BHJ_A        82 GLDVLVNNAGI----AFKVADPTPFHIQAEVtmktNFFGTRDVCTELLPLIK--PQGRVVNVSS 139
Cdd:PRK08267  77 RLDVLFNNAGIlrggPFEDIPLEAHDRVIDI----NVKGVLNGAHAALPYLKatPGARVINTSS 136
PRK06500 PRK06500
SDR family oxidoreductase;
7-254 8.66e-10

SDR family oxidoreductase;


Pssm-ID: 235816 [Multi-domain]  Cd Length: 249  Bit Score: 57.66  E-value: 8.66e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVrdlcRLFSGD---VVLTARDVTRGQAAVQQLQAEGLSPRfhqLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:PRK06500   9 ALITGGTSGIGLETA----RQFLAEgarVAITGRDPASLEAARAELGESALVIR---ADAGDVAAQKALAQALAEAFGRL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        84 DVLVNNAGiafkVADPTPFHIQAEV----TMKTNFFGTRDVCTELLPLI-KPQGRVVNVSsiMSVRalkscspelqqkfr 158
Cdd:PRK06500  82 DAVFINAG----VAKFAPLEDWDEAmfdrSFNTNVKGPYFLIQALLPLLaNPASIVLNGS--INAH-------------- 141
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       159 setiteeelVGLMNkfvedtkkgvhqkegwpSSAYGVTKIGVTVLsrihARKLSEQRKGDKILLNACCPGWVRTDMAG-- 236
Cdd:PRK06500 142 ---------IGMPN-----------------SSVYAASKAALLSL----AKTLSGELLPRGIRVNAVSPGPVQTPLYGkl 191
                        250       260       270
                 ....*....|....*....|....*....|....*..
3BHJ_A       237 --PKATK-----------------SPEEGAETPVYLA 254
Cdd:PRK06500 192 glPEATLdavaaqiqalvplgrfgTPEEIAKAVLYLA 228
PRK07831 PRK07831
SDR family oxidoreductase;
6-148 8.90e-10

SDR family oxidoreductase;


Pssm-ID: 236110 [Multi-domain]  Cd Length: 262  Bit Score: 57.74  E-value: 8.90e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGG-NKGIGLAIVRDlCRLFSGDVVLTARDVTRGQAAVQQLQAE-GLSPRFHQL-DIDDLQSIRALRDFLRKEYGG 82
Cdd:PRK07831  19 VVLVTAAaGTGIGSATARR-ALEEGARVVISDIHERRLGETADELAAElGLGRVEAVVcDVTSEAQVDALIDAAVERLGR 97
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
3BHJ_A        83 LDVLVNNAGIA--FKVADPT--PFHIQAEVTMKTNFFGTRdvctELLPLIKPQGR---VVNVSSIMSVRALKS 148
Cdd:PRK07831  98 LDVLVNNAGLGgqTPVVDMTddEWSRVLDVTLTGTFRATR----AALRYMRARGHggvIVNNASVLGWRAQHG 166
PRK06171 PRK06171
sorbitol-6-phosphate 2-dehydrogenase; Provisional
6-139 1.30e-09

sorbitol-6-phosphate 2-dehydrogenase; Provisional


Pssm-ID: 180439 [Multi-domain]  Cd Length: 266  Bit Score: 57.33  E-value: 1.30e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLcrLFSGDVVLTArDVTRGQAAVQQLQaeglsprFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK06171  11 IIIVTGGSSGIGLAIVKEL--LANGANVVNA-DIHGGDGQHENYQ-------FVPTDVSSAEEVNHTVAEIIEKFGRIDG 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
3BHJ_A        86 LVNNAGIAFK--VADPTPFHIQAE-----------VTMKTNFFGTRDVCTELLPliKPQGRVVNVSS 139
Cdd:PRK06171  81 LVNNAGINIPrlLVDEKDPAGKYElneaafdkmfnINQKGVFLMSQAVARQMVK--QHDGVIVNMSS 145
PRK05855 PRK05855
SDR family oxidoreductase;
7-139 1.41e-09

SDR family oxidoreductase;


Pssm-ID: 235628 [Multi-domain]  Cd Length: 582  Bit Score: 58.45  E-value: 1.41e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVL 86
Cdd:PRK05855 318 VVVTGAGSGIGRETALAFARE-GAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGVPDIV 396
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
3BHJ_A        87 VNNAGI--AFKVADPTPFHIQAevTMKTNFFGTRDVCTellpLIKPQ-------GRVVNVSS 139
Cdd:PRK05855 397 VNNAGIgmAGGFLDTSAEDWDR--VLDVNLWGVIHGCR----LFGRQmvergtgGHIVNVAS 452
PRK06398 PRK06398
aldose dehydrogenase; Validated
6-150 1.50e-09

aldose dehydrogenase; Validated


Pssm-ID: 235794 [Multi-domain]  Cd Length: 258  Bit Score: 57.15  E-value: 1.50e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDvtRGQAAVQqlqaeglsprFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK06398   8 VAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKE--PSYNDVD----------YFKVDVSNKEQVIKGIDYVISKYGRIDI 75
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
3BHJ_A        86 LVNNAGI-AFKVADPTPFHIQAEVtMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMSVRALKSCS 150
Cdd:PRK06398  76 LVNNAGIeSYGAIHAVEEDEWDRI-INVNVNGIFLMSKYTIPYMLKQdkGVIINIASVQSFAVTRNAA 142
SDR_c9 cd08931
classical (c) SDR, subgroup 9; This subgroup has the canonical active site tetrad and ...
9-139 1.87e-09

classical (c) SDR, subgroup 9; This subgroup has the canonical active site tetrad and NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187636 [Multi-domain]  Cd Length: 227  Bit Score: 56.69  E-value: 1.87e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        9 VTGGNKGIGLAIVRDLCR--LFSGdvvltARDV-TRGQAAVQ-QLQAEGLSPrfHQLDIDDLQSIR-ALRDFLRKEYGGL 83
Cdd:cd08931   5 ITGAASGIGRETALLFARngWFVG-----LYDIdEDGLAALAaELGAENVVA--GALDVTDRAAWAaALADFAAATGGRL 77
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|..
3BHJ_A       84 DVLVNNAGIafkvADPTPFHIQ----AEVTMKTNFFGTRDVCTELLPLIK--PQGRVVNVSS 139
Cdd:cd08931  78 DALFNNAGV----GRGGPFEDVplaaHDRMVDINVKGVLNGAYAALPYLKatPGARVINTAS 135
PRK12743 PRK12743
SDR family oxidoreductase;
6-97 1.92e-09

SDR family oxidoreductase;


Pssm-ID: 237187 [Multi-domain]  Cd Length: 256  Bit Score: 56.97  E-value: 1.92e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLT-ARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:PRK12743   4 VAIVTASDSGIGKACALLLAQ--QGfDIGITwHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRI 81
                         90
                 ....*....|....
3BHJ_A        84 DVLVNNAGIAFKVA 97
Cdd:PRK12743  82 DVLVNNAGAMTKAP 95
PRK09730 PRK09730
SDR family oxidoreductase;
6-142 2.37e-09

SDR family oxidoreductase;


Pssm-ID: 182051 [Multi-domain]  Cd Length: 247  Bit Score: 56.40  E-value: 2.37e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK09730   3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPLAA 82
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
3BHJ_A        86 LVNNAGIAFKVAdpTPFHIQAE---VTMKTNFFGTRDVCTELLPLIKPQ-----GRVVNVSSIMS 142
Cdd:PRK09730  83 LVNNAGILFTQC--TVENLTAErinRVLSTNVTGYFLCCREAVKRMALKhggsgGAIVNVSSAAS 145
BKR_2_SDR_c cd05349
putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) ...
6-139 2.37e-09

putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR; This subgroup includes Rhizobium sp. NGR234 FabG1. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187607 [Multi-domain]  Cd Length: 246  Bit Score: 56.31  E-value: 2.37e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFhqlDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:cd05349   2 VVLVTGASRGLGAAIARSFAREGARVVVNYYRSTESAEAVAAEAGERAIAIQA---DVRDRDQVQAMIEEAKNHFGPVDT 78
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
3BHJ_A       86 LVNNAGIAFKV---ADPTP-------FHIQAEVTMKtnffGTRDVCTELLPLIKPQ--GRVVNVSS 139
Cdd:cd05349  79 IVNNALIDFPFdpdQRKTFdtidwedYQQQLEGAVK----GALNLLQAVLPDFKERgsGRVINIGT 140
PRK06523 PRK06523
short chain dehydrogenase; Provisional
7-143 2.52e-09

short chain dehydrogenase; Provisional


Pssm-ID: 180604 [Multi-domain]  Cd Length: 260  Bit Score: 56.45  E-value: 2.52e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAvqqlqaeglSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVL 86
Cdd:PRK06523  12 ALVTGGTKGIGAATVARLLEA-GARVVTTARSRPDDLPE---------GVEFVAADLTTAEGCAAVARAVLERLGGVDIL 81
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
3BHJ_A        87 VNNAG--IAFK--VADPTPFHIQAEvtMKTNFFGTRDVCTELLPLIKPQGR--VVNVSSIMSV 143
Cdd:PRK06523  82 VHVLGgsSAPAggFAALTDEEWQDE--LNLNLLAAVRLDRALLPGMIARGSgvIIHVTSIQRR 142
PRK06114 PRK06114
SDR family oxidoreductase;
6-149 2.63e-09

SDR family oxidoreductase;


Pssm-ID: 180408 [Multi-domain]  Cd Length: 254  Bit Score: 56.33  E-value: 2.63e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAA-VQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK06114  10 VAFVTGAGSGIGQRIAIGLAQA-GADVALFDLRTDDGLAEtAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELGALT 88
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        85 VLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGR--VVNVSSIMSV---RALKSC 149
Cdd:PRK06114  89 LAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGgsIVNIASMSGIivnRGLLQA 158
PRK07067 PRK07067
L-iditol 2-dehydrogenase;
6-97 2.70e-09

L-iditol 2-dehydrogenase;


Pssm-ID: 235925 [Multi-domain]  Cd Length: 257  Bit Score: 56.57  E-value: 2.70e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRfhqLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK07067   8 VALLTGAASGIGEAVAERYLAE-GARVVIADIKPARARLAALEIGPAAIAVS---LDVTRQDSIDRIVAAAVERFGGIDI 83
                         90
                 ....*....|..
3BHJ_A        86 LVNNAGIaFKVA 97
Cdd:PRK07067  84 LFNNAAL-FDMA 94
PRK06940 PRK06940
short chain dehydrogenase; Provisional
6-269 2.95e-09

short chain dehydrogenase; Provisional


Pssm-ID: 180766 [Multi-domain]  Cd Length: 275  Bit Score: 56.57  E-value: 2.95e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNkGIGLAIVRdlcRLFSGDVVLTA-RDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRkEYGGLD 84
Cdd:PRK06940   4 VVVVIGAG-GIGQAIAR---RVGAGKKVLLAdYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQ-TLGPVT 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        85 VLVNNAGIafkvadpTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSiMSVRALKSCSPELQQKFrsETITE 164
Cdd:PRK06940  79 GLVHTAGV-------SPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIAS-QSGHRLPALTAEQERAL--ATTPT 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       165 EELVGLMNKFVEDTKKGVHqkegwpssAYGVTKIGVTVlsRIHARKLSEQRKGDKIllNACCPGWVRTDMA-----GPKA 239
Cdd:PRK06940 149 EELLSLPFLQPDAIEDSLH--------AYQIAKRANAL--RVMAEAVKWGERGARI--NSISPGIISTPLAqdelnGPRG 216
                        250       260       270
                 ....*....|....*....|....*....|....*..
3BHJ_A       240 T-------KSPEEGAETPVYLALLPPDAEGPHGQFVS 269
Cdd:PRK06940 217 DgyrnmfaKSPAGRPGTPDEIAALAEFLMGPRGSFIT 253
HSD10-like_SDR_c cd05371
17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs; HSD10, also known as ...
6-140 3.30e-09

17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs; HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187629 [Multi-domain]  Cd Length: 252  Bit Score: 56.14  E-value: 3.30e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLtardVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:cd05371   4 VAVVTGGASGLGLATVERLLAQ-GAKVVI----LDLPNSPGETVAKLGDNCRFVPVDVTSEKDVKAALALAKAKFGRLDI 78
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       86 LVNNAGIA-------FKVADPTPFHIQAEVtMKTNFFGTRDVCTELLPLI--------KPQGRVVNVSSI 140
Cdd:cd05371  79 VVNCAGIAvaaktynKKGQQPHSLELFQRV-INVNLIGTFNVIRLAAGAMgknepdqgGERGVIINTASV 147
fabG PRK08217
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
6-92 3.85e-09

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 181297 [Multi-domain]  Cd Length: 253  Bit Score: 55.74  E-value: 3.85e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK08217   7 VIVITGGAQGLGRAMAEYLAQ--KGaKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQLN 84

                 ....*...
3BHJ_A        85 VLVNNAGI 92
Cdd:PRK08217  85 GLINNAGI 92
PRK08945 PRK08945
putative oxoacyl-(acyl carrier protein) reductase; Provisional
8-266 4.20e-09

putative oxoacyl-(acyl carrier protein) reductase; Provisional


Pssm-ID: 236357 [Multi-domain]  Cd Length: 247  Bit Score: 55.65  E-value: 4.20e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         8 LVTGGNKGIGLAIVRDLCRlFSGDVVLTARDVTRGQAAVQQLQAEGLS-PRFHQLDID--DLQSIRALRDFLRKEYGGLD 84
Cdd:PRK08945  16 LVTGAGDGIGREAALTYAR-HGATVILLGRTEEKLEAVYDEIEAAGGPqPAIIPLDLLtaTPQNYQQLADTIEEQFGRLD 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        85 VLVNNAGIafkVADPTPF-HIQAEV---TMKTNFFGTRDVCTELLPLIK--PQGRVVNVSSimSVralkscspelqqkfr 158
Cdd:PRK08945  95 GVLHNAGL---LGELGPMeQQDPEVwqdVMQVNVNATFMLTQALLPLLLksPAASLVFTSS--SV--------------- 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       159 setiteeelvglmnkfvedtkkGVHQKEGWpsSAYGVTKIGVTVLSRIharkLSEQRKGDKILLNACCPGWVRTDMagpK 238
Cdd:PRK08945 155 ----------------------GRQGRANW--GAYAVSKFATEGMMQV----LADEYQGTNLRVNCINPGGTRTAM---R 203
                        250       260       270
                 ....*....|....*....|....*....|....*.
3BHJ_A       239 ATKSPEEGAET--------PVYLALLPPDAEGPHGQ 266
Cdd:PRK08945 204 ASAFPGEDPQKlktpedimPLYLYLMGDDSRRKNGQ 239
PRK08220 PRK08220
2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
6-139 4.69e-09

2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated


Pssm-ID: 236190 [Multi-domain]  Cd Length: 252  Bit Score: 55.66  E-value: 4.69e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfsGDVVlTARDVTRgqaavqqLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK08220  10 TVWVTGAAQGIGYAVALAFVEA--GAKV-IGFDQAF-------LTQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDV 79
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
3BHJ_A        86 LVNNAGIaFKVADPTPFHIQA-EVTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSS 139
Cdd:PRK08220  80 LVNAAGI-LRMGATDSLSDEDwQQTFAVNAGGAFNLFRAVMPQFRRQrsGAIVTVGS 135
PRK12746 PRK12746
SDR family oxidoreductase;
6-139 5.12e-09

SDR family oxidoreductase;


Pssm-ID: 183718 [Multi-domain]  Cd Length: 254  Bit Score: 55.43  E-value: 5.12e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY----- 80
Cdd:PRK12746   8 VALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELqirvg 87
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
3BHJ_A        81 -GGLDVLVNNAGIAFK--VADPTP--FHIQAEVTMKTNFFgtrdVCTELLPLIKPQGRVVNVSS 139
Cdd:PRK12746  88 tSEIDILVNNAGIGTQgtIENTTEeiFDEIMAVNIKAPFF----LIQQTLPLLRAEGRVINISS 147
PRK07097 PRK07097
gluconate 5-dehydrogenase; Provisional
6-143 6.06e-09

gluconate 5-dehydrogenase; Provisional


Pssm-ID: 235933 [Multi-domain]  Cd Length: 265  Bit Score: 55.45  E-value: 6.06e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSGDVV--LTARDVTRGQAAvqqLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:PRK07097  12 IALITGASYGIGFAIAKAYAKAGATIVFndINQELVDKGLAA---YRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVI 88
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
3BHJ_A        84 DVLVNNAGI-------AFKVADptpFHIQAEVTMKTNFFGTRDVCTELLPliKPQGRVVNVSSIMSV 143
Cdd:PRK07097  89 DILVNNAGIikripmlEMSAED---FRQVIDIDLNAPFIVSKAVIPSMIK--KGHGKIINICSMMSE 150
PRK08589 PRK08589
SDR family oxidoreductase;
6-145 6.51e-09

SDR family oxidoreductase;


Pssm-ID: 181491 [Multi-domain]  Cd Length: 272  Bit Score: 55.55  E-value: 6.51e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSGDVVLTArDVTRG-QAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK08589   8 VAVITGASTGIGQASAIALAQ--EGAYVLAV-DIAEAvSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRVD 84
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
3BHJ_A        85 VLVNNAGI---AFKVADpTPFHIQAEVtMKTNFFGTRDVCTELLPLIKPQ-GRVVNVSSiMSVRA 145
Cdd:PRK08589  85 VLFNNAGVdnaAGRIHE-YPVDVFDKI-MAVDMRGTFLMTKMLLPLMMEQgGSIINTSS-FSGQA 146
PRK08085 PRK08085
gluconate 5-dehydrogenase; Provisional
7-92 7.80e-09

gluconate 5-dehydrogenase; Provisional


Pssm-ID: 181225 [Multi-domain]  Cd Length: 254  Bit Score: 55.15  E-value: 7.80e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVRDLCRlFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVL 86
Cdd:PRK08085  12 ILITGSAQGIGFLLATGLAE-YGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPIDVL 90

                 ....*.
3BHJ_A        87 VNNAGI 92
Cdd:PRK08085  91 INNAGI 96
PRK08277 PRK08277
D-mannonate oxidoreductase; Provisional
6-146 8.65e-09

D-mannonate oxidoreductase; Provisional


Pssm-ID: 236216 [Multi-domain]  Cd Length: 278  Bit Score: 54.91  E-value: 8.65e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK08277  12 VAVITGGGGVLGGAMAKELAR--AGaKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGPCD 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        85 VLVNNAG--IAFKVADPTPFHIQAEVT-------------MKTNFFGTrdvcteLLP--------LIKPQGRVVNVSSIM 141
Cdd:PRK08277  90 ILINGAGgnHPKATTDNEFHELIEPTKtffdldeegfefvFDLNLLGT------LLPtqvfakdmVGRKGGNIINISSMN 163

                 ....*
3BHJ_A       142 SVRAL 146
Cdd:PRK08277 164 AFTPL 168
PLN02253 PLN02253
xanthoxin dehydrogenase
6-143 8.77e-09

xanthoxin dehydrogenase


Pssm-ID: 177895 [Multi-domain]  Cd Length: 280  Bit Score: 55.21  E-value: 8.77e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHqLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PLN02253  20 VALVTGGATGIGESIVRLFHK-HGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFH-CDVTVEDDVSRAVDFTVDKFGTLDI 97
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
3BHJ_A        86 LVNNAGIA------FKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKpqGRVVNVSSIMSV 143
Cdd:PLN02253  98 MVNNAGLTgppcpdIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKK--GSIVSLCSVASA 159
SDR_c3 cd05360
classical (c) SDR, subgroup 3; These proteins are members of the classical SDR family, with a ...
6-145 2.01e-08

classical (c) SDR, subgroup 3; These proteins are members of the classical SDR family, with a canonical active site triad (and also active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187618 [Multi-domain]  Cd Length: 233  Bit Score: 53.54  E-value: 2.01e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRdlcrLFSGD---VVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 82
Cdd:cd05360   2 VVVITGASSGIGRATAL----AFAERgakVVLAARSAEALHELAREVRELGGEAIAVVADVADAAQVERAADTAVERFGR 77
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
3BHJ_A       83 LDVLVNNAGIA-FKVADPTPFHIQAEVtMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMSVRA 145
Cdd:cd05360  78 IDTWVNNAGVAvFGRFEDVTPEEFRRV-FDVNYLGHVYGTLAALPHLRRRggGALINVGSLLGYRS 142
PRK07814 PRK07814
SDR family oxidoreductase;
6-141 2.07e-08

SDR family oxidoreductase;


Pssm-ID: 181131 [Multi-domain]  Cd Length: 263  Bit Score: 54.01  E-value: 2.07e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK07814  12 VAVVTGAGRGLGAAIALAFAEA-GADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGRLDI 90
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
3BHJ_A        86 LVNNAGIAFkvadPTPFHIQAEVTMKTNF-FGT---RDVCTELLPLI---KPQGRVVNVSSIM 141
Cdd:PRK07814  91 VVNNVGGTM----PNPLLSTSTKDLADAFtFNVataHALTVAAVPLMlehSGGGSVINISSTM 149
PR_SDR_c cd05357
pteridine reductase (PR), classical (c) SDRs; Pteridine reductases (PRs), members of the SDR ...
6-95 2.31e-08

pteridine reductase (PR), classical (c) SDRs; Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187615 [Multi-domain]  Cd Length: 234  Bit Score: 53.43  E-value: 2.31e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDV-TRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:cd05357   2 VALVTGAAKRIGRAIAEALAA--EGyRVVVHYNRSeAEAQRLKDELNALRNSAVLVQADLSDFAACADLVAAAFRAFGRC 79
                        90
                ....*....|..
3BHJ_A       84 DVLVNNAGIAFK 95
Cdd:cd05357  80 DVLVNNASAFYP 91
fabG PRK08642
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
6-139 2.88e-08

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 181517 [Multi-domain]  Cd Length: 253  Bit Score: 53.17  E-value: 2.88e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSGDVVltarDVTRGQAAVQQLQAEgLSPRF--HQLDIDDLQSIRALRDFLRKEYG-G 82
Cdd:PRK08642   7 TVLVTGGSRGLGAAIARAFAREGARVVV----NYHQSEDAAEALADE-LGDRAiaLQADVTDREQVQAMFATATEHFGkP 81
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
3BHJ_A        83 LDVLVNNAGIAFK---VADPTP-------FHIQAEVTMKtnffGTRDVCTELLPLIKPQ--GRVVNVSS 139
Cdd:PRK08642  82 ITTVVNNALADFSfdgDARKKAdditwedFQQQLEGSVK----GALNTIQAALPGMREQgfGRIINIGT 146
PRK12938 PRK12938
3-ketoacyl-ACP reductase;
6-140 2.95e-08

3-ketoacyl-ACP reductase;


Pssm-ID: 171822 [Multi-domain]  Cd Length: 246  Bit Score: 53.09  E-value: 2.95e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK12938   5 IAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGEIDV 84
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
3BHJ_A        86 LVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSI 140
Cdd:PRK12938  85 LVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERgwGRIINISSV 141
PRK09135 PRK09135
pteridine reductase; Provisional
6-147 3.57e-08

pteridine reductase; Provisional


Pssm-ID: 181668 [Multi-domain]  Cd Length: 249  Bit Score: 53.01  E-value: 3.57e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARdvtRGQAAVQQLQAEgL------SPRFHQLDIDDLQSIRALRDFLRK 78
Cdd:PRK09135   8 VALITGGARRIGAAIARTLHA--AGyRVAIHYH---RSAAEADALAAE-LnalrpgSAAALQADLLDPDALPELVAACVA 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        79 EYGGLDVLVNNAGIAFkvadPTPFHiqaEVT-------MKTN----FFGTRDVCTELLpliKPQGRVVNVSSIMSVRALK 147
Cdd:PRK09135  82 AFGRLDALVNNASSFY----PTPLG---SITeaqwddlFASNlkapFFLSQAAAPQLR---KQRGAIVNITDIHAERPLK 151
PKS_KR smart00822
This enzymatic domain is part of bacterial polyketide synthases; It catalyses the first step ...
8-102 4.24e-08

This enzymatic domain is part of bacterial polyketide synthases; It catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.


Pssm-ID: 214833 [Multi-domain]  Cd Length: 180  Bit Score: 51.71  E-value: 4.24e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A           8 LVTGGNKGIGLAIVRDLCRLFSGDVVLTAR---DVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:smart00822   4 LITGGLGGLGRALARWLAERGARRLVLLSRsgpDAPGAAALLAELEAAGARVTVVACDVADRDALAAVLAAIPAVEGPLT 83
                           90
                   ....*....|....*...
3BHJ_A          85 VLVNNAGiafkVADPTPF 102
Cdd:smart00822  84 GVIHAAG----VLDDGVL 97
PRK06947 PRK06947
SDR family oxidoreductase;
6-142 4.86e-08

SDR family oxidoreductase;


Pssm-ID: 180771 [Multi-domain]  Cd Length: 248  Bit Score: 52.50  E-value: 4.86e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRdLCRLFSGDVVLT-ARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK06947   4 VVLITGASRGIGRATAV-LAAARGWSVGINyARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGRLD 82
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
3BHJ_A        85 VLVNNAGI---AFKVADPTPFHIQAevTMKTNFFGTRDVCTELLPLIKPQ-----GRVVNVSSIMS 142
Cdd:PRK06947  83 ALVNNAGIvapSMPLADMDAARLRR--MFDTNVLGAYLCAREAARRLSTDrggrgGAIVNVSSIAS 146
PRK07069 PRK07069
short chain dehydrogenase; Validated
7-145 5.40e-08

short chain dehydrogenase; Validated


Pssm-ID: 180822 [Multi-domain]  Cd Length: 251  Bit Score: 52.40  E-value: 5.40e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVRDL----CRLFSGDVVLTArDVTRGQAAVQQLQAEGLSPRFhQLDIDDLQSIRALRDFLRKEYGG 82
Cdd:PRK07069   2 AFITGAAGGLGRAIARRMaeqgAKVFLTDINDAA-GLDAFAAEINAAHGEGVAFAA-VQDVTDEAQWQALLAQAADAMGG 79
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
3BHJ_A        83 LDVLVNNAGI----AFKVADPTPFHIQAEVTMKTNFFGtrdvCTELLPLIKPQ--GRVVNVSSIMSVRA 145
Cdd:PRK07069  80 LSVLVNNAGVgsfgAIEQIELDEWRRVMAINVESIFLG----CKHALPYLRASqpASIVNISSVAAFKA 144
benD PRK12823
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
6-140 6.74e-08

1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional


Pssm-ID: 183772 [Multi-domain]  Cd Length: 260  Bit Score: 52.25  E-value: 6.74e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARdvtrgQAAVQQLQAEGLSPRFHQL----DIDDLQSIRALRDFLRKEYG 81
Cdd:PRK12823  10 VVVVTGAAQGIGRGVALRAAAE-GARVVLVDR-----SELVHEVAAELRAAGGEALaltaDLETYAGAQAAMAAAVEAFG 83
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
3BHJ_A        82 GLDVLVNNAG--IAFK-VADPTPFHIQAEVtmKTNFFGTRDVCTELLPLIKPQGR--VVNVSSI 140
Cdd:PRK12823  84 RIDVLINNVGgtIWAKpFEEYEEEQIEAEI--RRSLFPTLWCCRAVLPHMLAQGGgaIVNVSSI 145
human_WWOX_like_SDR_c-like cd09809
human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs; Classical-like ...
6-267 6.99e-08

human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs; Classical-like SDR domain of human WWOX and related proteins. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187669 [Multi-domain]  Cd Length: 284  Bit Score: 52.60  E-value: 6.99e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCrLFSGDVVLTARDVTRGQAAVQQLQAEGLSPR--FHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:cd09809   3 VIIITGANSGIGFETARSFA-LHGAHVILACRNMSRASAAVSRILEEWHKARveAMTLDLASLRSVQRFAEAFKAKNSPL 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       84 DVLVNNAGIafkVADPTPFHIQA-EVTMKTNFFGTRDVCTELLPLIK--PQGRVVNVSSimsvralkscspelqqkfRSE 160
Cdd:cd09809  82 HVLVCNAAV---FALPWTLTEDGlETTFQVNHLGHFYLVQLLEDVLRrsAPARVIVVSS------------------ESH 140
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      161 TITeeelvglmNKFVEDTKKGVH-----QKEGWPSSAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPG------- 228
Cdd:cd09809 141 RFT--------DLPDSCGNLDFSllsppKKKYWSMLAYNRAKLCNILFSNELHRRLSPR----GITSNSLHPGnmmyssi 208
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*.
3BHJ_A      229 ----WVRT---DMAGPkATKSPEEGAETPVYLALLpPDAEGPHGQF 267
Cdd:cd09809 209 hrnwWVYTllfTLARP-FTKSMQQGAATTVYCATA-PELEGLGGMY 252
PRK05872 PRK05872
short chain dehydrogenase; Provisional
6-140 7.53e-08

short chain dehydrogenase; Provisional


Pssm-ID: 235633 [Multi-domain]  Cd Length: 296  Bit Score: 52.28  E-value: 7.53e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDvtrgQAAVQQLQAE-GLSPRFHQL--DIDDLQSIRALRDFLRKEYGG 82
Cdd:PRK05872  11 VVVVTGAARGIGAELARRLHAR-GAKLALVDLE----EAELAALAAElGGDDRVLTVvaDVTDLAAMQAAAEEAVERFGG 85
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
3BHJ_A        83 LDVLVNNAGIA----FKVADPTPFhiqaEVTMKTNFFGTRDVCTELLP-LIKPQGRVVNVSSI 140
Cdd:PRK05872  86 IDVVVANAGIAsggsVAQVDPDAF----RRVIDVNLLGVFHTVRATLPaLIERRGYVLQVSSL 144
PRK08936 PRK08936
glucose-1-dehydrogenase; Provisional
6-140 9.29e-08

glucose-1-dehydrogenase; Provisional


Pssm-ID: 181585 [Multi-domain]  Cd Length: 261  Bit Score: 52.04  E-value: 9.29e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK08936   9 VVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFGTLDV 88
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
3BHJ_A        86 LVNNAGIafkvADPTPFHiqaEVTMK-------TN----FFGTRDVCTELLPLIKPqGRVVNVSSI 140
Cdd:PRK08936  89 MINNAGI----ENAVPSH---EMSLEdwnkvinTNltgaFLGSREAIKYFVEHDIK-GNIINMSSV 146
PRK08177 PRK08177
SDR family oxidoreductase;
5-239 1.07e-07

SDR family oxidoreductase;


Pssm-ID: 236173 [Multi-domain]  Cd Length: 225  Bit Score: 51.18  E-value: 1.07e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         5 HVALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRGQA--AVQQLQAEglsprfhQLDIDDLQSIRALRDFLRKEYg 81
Cdd:PRK08177   2 RTALIIGASRGLGLGLVDRLLE--RGwQVTATVRGPQQDTAlqALPGVHIE-------KLDMNDPASLDQLLQRLQGQR- 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        82 gLDVLVNNAGIAfKVADPTPFHIQAEVTMK---TNFFGTRDVCTELLPLIKP-QGRVVNVSSIM-SVRALKSCSPELQQK 156
Cdd:PRK08177  72 -FDLLFVNAGIS-GPAHQSAADATAAEIGQlflTNAIAPIRLARRLLGQVRPgQGVLAFMSSQLgSVELPDGGEMPLYKA 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       157 FRSetiteeELVGLMNKFVEDtkkgvhqkegwpssaygVTKIGVTVLSrIHarklseqrkgdkillnaccPGWVRTDMAG 236
Cdd:PRK08177 150 SKA------ALNSMTRSFVAE-----------------LGEPTLTVLS-MH-------------------PGWVKTDMGG 186

                 ...
3BHJ_A       237 PKA 239
Cdd:PRK08177 187 DNA 189
CR_SDR_c cd08936
Porcine peroxisomal carbonyl reductase like, classical (c) SDR; This subgroup contains porcine ...
6-151 1.38e-07

Porcine peroxisomal carbonyl reductase like, classical (c) SDR; This subgroup contains porcine peroxisomal carbonyl reductase and similar proteins. The porcine enzyme efficiently reduces retinals. This subgroup also includes human dehydrogenase/reductase (SDR family) member 4 (DHRS4), and human DHRS4L1. DHRS4 is a peroxisomal enzyme with 3beta-hydroxysteroid dehydrogenase activity; it catalyzes the reduction of 3-keto-C19/C21-steroids into 3beta-hydroxysteroids more efficiently than it does the retinal reduction. The human DHRS4 gene cluster contains DHRS4, DHRS4L2 and DHRS4L1. DHRS4L2 and DHRS4L1 are paralogs of DHRS4, DHRS4L2 being the most recent member. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187641 [Multi-domain]  Cd Length: 256  Bit Score: 51.39  E-value: 1.38e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:cd08936  12 VALVTASTDGIGLAIARRLAQD-GAHVVVSSRKQQNVDRAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVNLHGGVDI 90
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
3BHJ_A       86 LVNNAGI---AFKVADPTP--FHIQAEVTMKTNFFGTRDVCTELLPliKPQGRVVNVSSIMSVRALKSCSP 151
Cdd:cd08936  91 LVSNAAVnpfFGNILDSTEevWDKILDVNVKATALMTKAVVPEMEK--RGGGSVVIVSSVAAFHPFPGLGP 159
DR_C-13_KR_SDR_c_like cd08951
daunorubicin C-13 ketoreductase (KR), classical (c)-like SDRs; Daunorubicin is a clinically ...
8-254 1.40e-07

daunorubicin C-13 ketoreductase (KR), classical (c)-like SDRs; Daunorubicin is a clinically important therapeutic compound used in some cancer treatments. Daunorubicin C-13 ketoreductase is member of the classical SDR family with a canonical glycine-rich NAD(P)-binding motif, but lacking a complete match to the active site tetrad characteristic of this group. The critical Tyr, plus the Lys and upstream Asn are present, but the catalytic Ser is replaced, generally by Gln. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187654 [Multi-domain]  Cd Length: 260  Bit Score: 51.34  E-value: 1.40e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        8 LVTGGNKGIGLAIVRDLcrLFSG-DVVLTARDVTRGqAAVQQLQAEGLSprfhqLDIDDLQSIRALRDFLRK--EYGGLD 84
Cdd:cd08951  11 FITGSSDGLGLAAARTL--LHQGhEVVLHARSQKRA-ADAKAACPGAAG-----VLIGDLSSLAETRKLADQvnAIGRFD 82
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       85 VLVNNAGIafkvadptpfhIQAEVTMKTNFFGTRDVCTELLP------LIKPQGRVVNVSSIMSVRAlkscspelqqkfr 158
Cdd:cd08951  83 AVIHNAGI-----------LSGPNRKTPDTGIPAMVAVNVLApyvltaLIRRPKRLIYLSSGMHRGG------------- 138
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      159 setiteEELVGLMNKFvedtkkgvhqKEGWPSS-AYGVTKIGVTVLSRIHARKLSeqrkgdKILLNACCPGWVRTDMAGP 237
Cdd:cd08951 139 ------NASLDDIDWF----------NRGENDSpAYSDSKLHVLTLAAAVARRWK------DVSSNAVHPGWVPTKMGGA 196
                       250
                ....*....|....*..
3BHJ_A      238 KATKSPEEGAETPVYLA 254
Cdd:cd08951 197 GAPDDLEQGHLTQVWLA 213
DHRS1-like_SDR_c cd09763
human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs; This ...
6-90 1.41e-07

human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs; This subgroup includes human DHRS1 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187664 [Multi-domain]  Cd Length: 265  Bit Score: 51.29  E-value: 1.41e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRlfSGDVV-LTARDVTRGQAAV-QQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG- 82
Cdd:cd09763   5 IALVTGASRGIGRGIALQLGE--AGATVyITGRTILPQLPGTaEEIEARGGKCIPVRCDHSDDDEVEALFERVAREQQGr 82

                ....*...
3BHJ_A       83 LDVLVNNA 90
Cdd:cd09763  83 LDILVNNA 90
PRK09186 PRK09186
flagellin modification protein A; Provisional
6-147 1.42e-07

flagellin modification protein A; Provisional


Pssm-ID: 236399 [Multi-domain]  Cd Length: 256  Bit Score: 51.14  E-value: 1.42e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCrLFSGDVVLTARDVTRGQAAVQQLQAEGLSPR--FHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:PRK09186   6 TILITGAGGLIGSALVKAIL-EAGGIVIAADIDKEALNELLESLGKEFKSKKlsLVELDITDQESLEEFLSKSAEKYGKI 84
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
3BHJ_A        84 DVLVNNA-------GIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELlpLIKPQGRVVNVSSIMSVRALK 147
Cdd:PRK09186  85 DGAVNCAyprnkdyGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYF--KKQGGGNLVNISSIYGVVAPK 153
PRK12936 PRK12936
3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
7-143 1.45e-07

3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed


Pssm-ID: 171820 [Multi-domain]  Cd Length: 245  Bit Score: 51.07  E-value: 1.45e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVRDLCRlfSGDVV-LTARDVTRGQAAVQQLqaeGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK12936   9 ALVTGASGGIGEEIARLLHA--QGAIVgLHGTRVEKLEALAAEL---GERVKIFPANLSDRDEVKALGQKAEADLEGVDI 83
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
3BHJ_A        86 LVNNAGIA-----FKVADPTpFHIQAEVTMKTNFFGTRDVCTellPLIKPQ-GRVVNVSSIMSV 143
Cdd:PRK12936  84 LVNNAGITkdglfVRMSDED-WDSVLEVNLTATFRLTRELTH---PMMRRRyGRIINITSVVGV 143
PLN00015 PLN00015
protochlorophyllide reductase
8-140 1.58e-07

protochlorophyllide reductase


Pssm-ID: 177654  Cd Length: 308  Bit Score: 51.63  E-value: 1.58e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         8 LVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLV 87
Cdd:PLN00015   1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLV 80
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
3BHJ_A        88 NNAGIAFKVA-DPTPFHIQAEVTMKTNFFGTRDVCTELLPLIK----PQGRVVNVSSI 140
Cdd:PLN00015  81 CNAAVYLPTAkEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKksdyPSKRLIIVGSI 138
PRK12428 PRK12428
coniferyl-alcohol dehydrogenase;
58-140 1.66e-07

coniferyl-alcohol dehydrogenase;


Pssm-ID: 237099 [Multi-domain]  Cd Length: 241  Bit Score: 50.77  E-value: 1.66e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        58 FHQLDIDDLQSIRALrdfLRKEYGGLDVLVNNAGIAfKVADPtpfhiqaEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 137
Cdd:PRK12428  27 FIQADLGDPASIDAA---VAALPGRIDALFNIAGVP-GTAPV-------ELVARVNFLGLRHLTEALLPRMAPGGAIVNV 95

                 ...
3BHJ_A       138 SSI 140
Cdd:PRK12428  96 ASL 98
PRK06482 PRK06482
SDR family oxidoreductase;
8-139 2.10e-07

SDR family oxidoreductase;


Pssm-ID: 235813 [Multi-domain]  Cd Length: 276  Bit Score: 50.88  E-value: 2.10e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         8 LVTGGNKGIGLAIVRDLcrLFSGD-VVLTARDVtrgqAAVQQLQAE-GLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK06482   6 FITGASSGFGRGMTERL--LARGDrVAATVRRP----DALDDLKARyGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDV 79
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
3BHJ_A        86 LVNNAGI-----AFKVADPtpfhiQAEVTMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSS 139
Cdd:PRK06482  80 VVSNAGYglfgaAEELSDA-----QIRRQIDTNLIGSIQVIRAALPHLRRQggGRIVQVSS 135
PRK07985 PRK07985
SDR family oxidoreductase;
7-259 2.48e-07

SDR family oxidoreductase;


Pssm-ID: 181188 [Multi-domain]  Cd Length: 294  Bit Score: 50.76  E-value: 2.48e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAA-VQQLQAE-GLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:PRK07985  52 ALVTGGDSGIGRAAAIAYARE-GADVAISYLPVEEEDAQdVKKIIEEcGRKAVLLPGDLSDEKFARSLVHEAHKALGGLD 130
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        85 VLVNNAGIAFKV---ADPTPFHIQAevTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRAlkscSPELQQkfrset 161
Cdd:PRK07985 131 IMALVAGKQVAIpdiADLTSEQFQK--TFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQP----SPHLLD------ 198
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       162 iteeelvglmnkfvedtkkgvhqkegwpssaYGVTKIGVTVLSRIHARKLSEqrKGdkILLNACCPGWVRTDM---AGPK 238
Cdd:PRK07985 199 -------------------------------YAATKAAILNYSRGLAKQVAE--KG--IRVNIVAPGPIWTALqisGGQT 243
                        250       260
                 ....*....|....*....|.
3BHJ_A       239 ATKSPEEGAETPVYLALLPPD 259
Cdd:PRK07985 244 QDKIPQFGQQTPMKRAGQPAE 264
PRK07478 PRK07478
short chain dehydrogenase; Provisional
6-92 2.97e-07

short chain dehydrogenase; Provisional


Pssm-ID: 180993 [Multi-domain]  Cd Length: 254  Bit Score: 50.31  E-value: 2.97e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGlaivRDLCRLFSGD---VVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 82
Cdd:PRK07478   8 VAIITGASSGIG----RAAAKLFAREgakVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGG 83
                         90
                 ....*....|
3BHJ_A        83 LDVLVNNAGI 92
Cdd:PRK07478  84 LDIAFNNAGT 93
WcaG COG0451
Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis];
8-140 3.71e-07

Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440220 [Multi-domain]  Cd Length: 295  Bit Score: 50.36  E-value: 3.71e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        8 LVTGGNKGIGLAIVRDLCRLfsG-DVVLTARDVTRGQAAVQQLQAEglsprFHQLDIDDLQSI-RALRDFlrkeygglDV 85
Cdd:COG0451   3 LVTGGAGFIGSHLARRLLAR--GhEVVGLDRSPPGAANLAALPGVE-----FVRGDLRDPEALaAALAGV--------DA 67
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
3BHJ_A       86 LVNNAGIA-FKVADPtpfhiqaEVTMKTNFFGTRDVCTELLPliKPQGRVVNVSSI 140
Cdd:COG0451  68 VVHLAAPAgVGEEDP-------DETLEVNVEGTLNLLEAARA--AGVKRFVYASSS 114
PRK07791 PRK07791
short chain dehydrogenase; Provisional
6-92 4.29e-07

short chain dehydrogenase; Provisional


Pssm-ID: 236099 [Multi-domain]  Cd Length: 286  Bit Score: 50.06  E-value: 4.29e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLA------------IVRDLCRLFSGdvvlTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALR 73
Cdd:PRK07791   8 VVIVTGAGGGIGRAhalafaaegarvVVNDIGVGLDG----SASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83
                         90
                 ....*....|....*....
3BHJ_A        74 DFLRKEYGGLDVLVNNAGI 92
Cdd:PRK07791  84 DAAVETFGGLDVLVNNAGI 102
PRK12481 PRK12481
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;
6-263 5.01e-07

2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;


Pssm-ID: 171531 [Multi-domain]  Cd Length: 251  Bit Score: 49.52  E-value: 5.01e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfSGDVVltarDVTRGQAAVQQLQAEGLSPRFHQL--DIDDLQSIRALRDFLRKEYGGL 83
Cdd:PRK12481  10 VAIITGCNTGLGQGMAIGLAKA-GADIV----GVGVAEAPETQAQVEALGRKFHFItaDLIQQKDIDSIVSQAVEVMGHI 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        84 DVLVNNAGIaFKVADPTPFHIQ-----AEVTMKTNFFGTRDVCTEllpLIKPQ--GRVVNVSSIMSVRAlkscspelqqk 156
Cdd:PRK12481  85 DILINNAGI-IRRQDLLEFGNKdwddvININQKTVFFLSQAVAKQ---FVKQGngGKIINIASMLSFQG----------- 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       157 frsetiteeelvglmnkfvedtkkgvhqkeGWPSSAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTD-MA 235
Cdd:PRK12481 150 ------------------------------GIRVPSYTASKSAVMGLTRALATELSQY----NINVNAIAPGYMATDnTA 195
                        250       260       270
                 ....*....|....*....|....*....|
3BHJ_A       236 GPKATKSPEEG--AETPVYLALLPPDAEGP 263
Cdd:PRK12481 196 ALRADTARNEAilERIPASRWGTPDDLAGP 225
PRK06113 PRK06113
7-alpha-hydroxysteroid dehydrogenase; Validated
5-140 6.74e-07

7-alpha-hydroxysteroid dehydrogenase; Validated


Pssm-ID: 135765 [Multi-domain]  Cd Length: 255  Bit Score: 49.46  E-value: 6.74e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         5 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQ--AAVQQL--QAEGLSprfhqLDIDDLQSIRALRDFLRKEY 80
Cdd:PRK06113  12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHvvDEIQQLggQAFACR-----CDITSEQELSALADFALSKL 86
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
3BHJ_A        81 GGLDVLVNNAGiafkVADPTPFHIQAEV---TMKTNFFGTRDVCTELLPLIKPQ--GRVVNVSSI 140
Cdd:PRK06113  87 GKVDILVNNAG----GGGPKPFDMPMADfrrAYELNVFSFFHLSQLVAPEMEKNggGVILTITSM 147
PRK06123 PRK06123
SDR family oxidoreductase;
6-142 7.22e-07

SDR family oxidoreductase;


Pssm-ID: 180411 [Multi-domain]  Cd Length: 248  Bit Score: 49.01  E-value: 7.22e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK06123   4 VMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRLDA 83
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
3BHJ_A        86 LVNNAGI---AFKVADPTPFHIQAevTMKTNFFGTRDVCTELLPLIKPQ-----GRVVNVSSIMS 142
Cdd:PRK06123  84 LVNNAGIleaQMRLEQMDAARLTR--IFATNVVGSFLCAREAVKRMSTRhggrgGAIVNVSSMAA 146
PRK10538 PRK10538
bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase ...
6-139 8.83e-07

bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG;


Pssm-ID: 182531 [Multi-domain]  Cd Length: 248  Bit Score: 48.98  E-value: 8.83e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSGDVVLTArdvTRGQAAVQQLQAEgLSPRFH--QLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:PRK10538   2 IVLVTGATAGFGECITRRFIQ--QGHKVIAT---GRRQERLQELKDE-LGDNLYiaQLDVRNRAAIEEMLASLPAEWRNI 75
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
3BHJ_A        84 DVLVNNAGIAFKVadpTPFHiQAEV----TM-KTNFFGTRDVCTELLP--LIKPQGRVVNVSS 139
Cdd:PRK10538  76 DVLVNNAGLALGL---EPAH-KASVedweTMiDTNNKGLVYMTRAVLPgmVERNHGHIINIGS 134
PRK07576 PRK07576
short chain dehydrogenase; Provisional
7-138 9.34e-07

short chain dehydrogenase; Provisional


Pssm-ID: 236056 [Multi-domain]  Cd Length: 264  Bit Score: 48.80  E-value: 9.34e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVL 86
Cdd:PRK07576  12 VVVVGGTSGINLGIAQAFARA-GANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPIDVL 90
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
3BHJ_A        87 VNNAGIAFkvadPTPfhiqaEVTMKTNFF---------GTRDVCTELLPLI-KPQGRVVNVS 138
Cdd:PRK07576  91 VSGAAGNF----PAP-----AAGMSANGFktvvdidllGTFNVLKAAYPLLrRPGASIIQIS 143
DHRS6_like_SDR_c cd05368
human DHRS6-like, classical (c) SDRs; Human DHRS6, and similar proteins. These proteins are ...
6-254 9.56e-07

human DHRS6-like, classical (c) SDRs; Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P).


Pssm-ID: 187626 [Multi-domain]  Cd Length: 241  Bit Score: 48.62  E-value: 9.56e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRlfSGDVVLtARDVTrgQAAVQQLQAEGLSPRfHQLDIDDLQSIRALRdflrKEYGGLDV 85
Cdd:cd05368   4 VALITAAAQGIGRAIALAFAR--EGANVI-ATDIN--EEKLKELERGPGITT-RVLDVTDKEQVAALA----KEEGRIDV 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       86 LVNNAGIAF--KVADPTP----FHIqaEVTMKTNFFGTRDVCTELLPliKPQGRVVNVSSIMSvralkscspelqqkfrs 159
Cdd:cd05368  74 LFNCAGFVHhgSILDCEDddwdFAM--NLNVRSMYLMIKAVLPKMLA--RKDGSIINMSSVAS----------------- 132
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      160 etiteeELVGLMNKFVedtkkgvhqkegwpssaYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRT------- 232
Cdd:cd05368 133 ------SIKGVPNRFV-----------------YSTTKAAVIGLTKSVAADFAQQ----GIRCNAICPGTVDTpsleeri 185
                       250       260       270
                ....*....|....*....|....*....|....*.
3BHJ_A      233 -----------DMAGPKATK---SPEEGAETPVYLA 254
Cdd:cd05368 186 qaqpdpeealkAFAARQPLGrlaTPEEVAALAVYLA 221
17beta-HSD1_like_SDR_c cd05356
17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) ...
7-140 1.08e-06

17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs; This subgroup includes various 17-beta-hydroxysteroid dehydrogenases and 3-ketoacyl-CoA reductase, these are members of the SDR family, and contain the canonical active site tetrad and glycine-rich NAD-binding motif of the classical SDRs. 3-ketoacyl-CoA reductase (KAR, aka 17beta-HSD type 12, encoded by HSD17B12) acts in fatty acid elongation; 17beta- hydroxysteroid dehydrogenases are isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. 17beta-estradiol dehydrogenase (aka 17beta-HSD type 1, encoded by HSD17B1) converts estrone to estradiol. Estradiol is the predominant female sex hormone. 17beta-HSD type 3 (aka testosterone 17-beta-dehydrogenase 3, encoded by HSD17B3) catalyses the reduction of androstenedione to testosterone, it also accepts estrogens as substrates. This subgroup also contains a putative steroid dehydrogenase let-767 from Caenorhabditis elegans, mutation in which results in hypersensitivity to cholesterol limitation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187614 [Multi-domain]  Cd Length: 239  Bit Score: 48.37  E-value: 1.08e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        7 ALVTGGNKGIGLAIVRDLCRlfSG-DVVLtardVTRGQAAVQQLQAE-----GLSPRFHQLDIDDLQSIralRDFLRKEY 80
Cdd:cd05356   4 AVVTGATDGIGKAYAEELAK--RGfNVIL----ISRTQEKLDAVAKEieekyGVETKTIAADFSAGDDI---YERIEKEL 74
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
3BHJ_A       81 GGLDV--LVNNAGIAFKVadPTPFHiqaEV-------TMKTNFFGTRDVCTELLPLIKPQGR--VVNVSSI 140
Cdd:cd05356  75 EGLDIgiLVNNVGISHSI--PEYFL---ETpedelqdIINVNVMATLKMTRLILPGMVKRKKgaIVNISSF 140
PRK07677 PRK07677
short chain dehydrogenase; Provisional
6-90 1.51e-06

short chain dehydrogenase; Provisional


Pssm-ID: 181077 [Multi-domain]  Cd Length: 252  Bit Score: 48.14  E-value: 1.51e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK07677   3 VVIITGGSSGMGKAMAKRFAEE-GANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRIDA 81

                 ....*
3BHJ_A        86 LVNNA 90
Cdd:PRK07677  82 LINNA 86
PRK12742 PRK12742
SDR family oxidoreductase;
7-269 2.10e-06

SDR family oxidoreductase;


Pssm-ID: 183714 [Multi-domain]  Cd Length: 237  Bit Score: 47.83  E-value: 2.10e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVRdlcRLFS--GDVVLTArdVTRGQAAvQQLQAEGLSPRFhQLDIDDlqsIRALRDFLRkEYGGLD 84
Cdd:PRK12742   9 VLVLGGSRGIGAAIVR---RFVTdgANVRFTY--AGSKDAA-ERLAQETGATAV-QTDSAD---RDAVIDVVR-KSGALD 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        85 VLVNNAGIA----------------FKVADPTPFHIQAEVTMKtnffgtrdvctellplIKPQGRVVNVSSIMSVRAlks 148
Cdd:PRK12742  78 ILVVNAGIAvfgdaleldaddidrlFKINIHAPYHASVEAARQ----------------MPEGGRIIIIGSVNGDRM--- 138
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       149 cspelqqkfrsetiteeELVGLmnkfvedtkkgvhqkegwpsSAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPG 228
Cdd:PRK12742 139 -----------------PVAGM--------------------AAYAASKSALQGMARGLARDFGPR----GITINVVQPG 177
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
3BHJ_A       229 WVRTD-----------MAGPKATK---SPEEGAETPVYLAllppdaeGPHGQFVS 269
Cdd:PRK12742 178 PIDTDanpangpmkdmMHSFMAIKrhgRPEEVAGMVAWLA-------GPEASFVT 225
PRK08278 PRK08278
SDR family oxidoreductase;
7-91 4.54e-06

SDR family oxidoreductase;


Pssm-ID: 181349 [Multi-domain]  Cd Length: 273  Bit Score: 46.82  E-value: 4.54e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDV--------TRGQAAvQQLQAEGLSPRFHQLDIDDLQSIRALRDFLR 77
Cdd:PRK08278   9 LFITGASRGIGLAIALRAAR--DGaNIVIAAKTAephpklpgTIHTAA-EEIEAAGGQALPLVGDVRDEDQVAAAVAKAV 85
                         90
                 ....*....|....
3BHJ_A        78 KEYGGLDVLVNNAG 91
Cdd:PRK08278  86 ERFGGIDICVNNAS 99
PRK05717 PRK05717
SDR family oxidoreductase;
6-230 5.60e-06

SDR family oxidoreductase;


Pssm-ID: 168204 [Multi-domain]  Cd Length: 255  Bit Score: 46.42  E-value: 5.60e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLcrLFSG-DVVLTARDVTRGQAAVQQLqaeGLSPRFHQLDI-DDLQSIRALRDFLRkEYGGL 83
Cdd:PRK05717  12 VALVTGAARGIGLGIAAWL--IAEGwQVVLADLDRERGSKVAKAL---GENAWFIAMDVaDEAQVAAGVAEVLG-QFGRL 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        84 DVLVNNAGIafkvADPtpfhiqaevtmktnffgtRDVCTELLPLiKPQGRVVNVSSIMSVRALKSCSPELQqkfrsetit 163
Cdd:PRK05717  86 DALVCNAAI----ADP------------------HNTTLESLSL-AHWNRVLAVNLTGPMLLAKHCAPYLR--------- 133
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
3BHJ_A       164 eeelvGLMNKFVEDTKKGVHQKEGwPSSAYGVTKIGVTVLSriHARKLSeqrKGDKILLNACCPGWV 230
Cdd:PRK05717 134 -----AHNGAIVNLASTRARQSEP-DTEAYAASKGGLLALT--HALAIS---LGPEIRVNAVSPGWI 189
PRK06194 PRK06194
hypothetical protein; Provisional
6-93 5.91e-06

hypothetical protein; Provisional


Pssm-ID: 180458 [Multi-domain]  Cd Length: 287  Bit Score: 46.55  E-value: 5.91e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfsG-DVVLTarDVTRG--QAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 82
Cdd:PRK06194   8 VAVITGAASGFGLAFARIGAAL--GmKLVLA--DVQQDalDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGA 83
                         90
                 ....*....|.
3BHJ_A        83 LDVLVNNAGIA 93
Cdd:PRK06194  84 VHLLFNNAGVG 94
PRK05876 PRK05876
short chain dehydrogenase; Provisional
7-234 6.92e-06

short chain dehydrogenase; Provisional


Pssm-ID: 135637 [Multi-domain]  Cd Length: 275  Bit Score: 46.49  E-value: 6.92e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVL 86
Cdd:PRK05876   9 AVITGGASGIGLATGTEFARR-GARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGHVDVV 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        87 VNNAGI--AFKVADPTpfHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALkscspelqqkfrsetite 164
Cdd:PRK05876  88 FSNAGIvvGGPIVEMT--HDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGL------------------ 147
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       165 eelvglmnkfVEDTKKGvhqkegwpssAYGVTKIGVTVLsrihARKLSEQRKGDKILLNACCPGWVRTDM 234
Cdd:PRK05876 148 ----------VPNAGLG----------AYGVAKYGVVGL----AETLAREVTADGIGVSVLCPMVVETNL 193
PRK05875 PRK05875
short chain dehydrogenase; Provisional
8-257 8.02e-06

short chain dehydrogenase; Provisional


Pssm-ID: 180300 [Multi-domain]  Cd Length: 276  Bit Score: 46.33  E-value: 8.02e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         8 LVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK05875  11 LVTGGGSGIGKGVAAGLVAA-GAAVMIVGRNPDKLAAAAEEIEALKGagAVRYEPADVTDEDQVARAVDAATAWHGRLHG 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        86 LVNNAGIAFKVADPTPFHIQA-EVTMKTNFFGTrdvctelLPLIKPQGR---------VVNVSSIMSvralkscspelqq 155
Cdd:PRK05875  90 VVHCAGGSETIGPITQIDSDAwRRTVDLNVNGT-------MYVLKHAARelvrggggsFVGISSIAA------------- 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       156 kfrSETiteeelvglmnkfvedtkkgvHQKEGwpssAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTDMA 235
Cdd:PRK05875 150 ---SNT---------------------HRWFG----AYGVTKSAVDHLMKLAADELGPS----WVRVNSIRPGLIRTDLV 197
                        250       260
                 ....*....|....*....|..
3BHJ_A       236 GPkATKSPEEGAEtpvYLALLP 257
Cdd:PRK05875 198 AP-ITESPELSAD---YRACTP 215
PRK12747 PRK12747
short chain dehydrogenase; Provisional
6-234 8.58e-06

short chain dehydrogenase; Provisional


Pssm-ID: 183719 [Multi-domain]  Cd Length: 252  Bit Score: 45.84  E-value: 8.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG--- 82
Cdd:PRK12747   6 VALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQNrtg 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        83 ---LDVLVNNAGI---AFkVADPTP--FHIQAEVTMKTNFFgtrdVCTELLPLIKPQGRVVNVSSIMSVRALKScspelq 154
Cdd:PRK12747  86 stkFDILINNAGIgpgAF-IEETTEqfFDRMVSVNAKAPFF----IIQQALSRLRDNSRIINISSAATRISLPD------ 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       155 qkfrsetiteeelvglmnkFVedtkkgvhqkegwpssAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTDM 234
Cdd:PRK12747 155 -------------------FI----------------AYSMTKGAINTMTFTLAKQLGAR----GITVNAILPGFIKTDM 195
Epimerase pfam01370
NAD dependent epimerase/dehydratase family; This family of proteins utilize NAD as a cofactor. ...
7-210 1.07e-05

NAD dependent epimerase/dehydratase family; This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.


Pssm-ID: 396097 [Multi-domain]  Cd Length: 238  Bit Score: 45.37  E-value: 1.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A          7 ALVTGGNKGIGLAIVRDLcrLFSG-DVVLTARDVTRGQAAVqqlqaeGLSPRFHQLDIDDlqsIRALRDFLRKEygGLDV 85
Cdd:pfam01370   1 ILVTGATGFIGSHLVRRL--LEKGyEVIGLDRLTSASNTAR------LADLRFVEGDLTD---RDALEKLLADV--RPDA 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         86 LVNNAGIAFKVADptpfHIQAEVTMKTNFFGTRDVCTELLplIKPQGRVVNVSSimsvralkSCS-PELQQKFRSETITE 164
Cdd:pfam01370  68 VIHLAAVGGVGAS----IEDPEDFIEANVLGTLNLLEAAR--KAGVKRFLFASS--------SEVyGDGAEIPQEETTLT 133
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
3BHJ_A        165 EELVglmnkfvedtkkgvhqkegwPSSAYGVTKIGVTVLSRIHARK 210
Cdd:pfam01370 134 GPLA--------------------PNSPYAAAKLAGEWLVLAYAAA 159
cyclohexanol_reductase_SDR_c cd05330
cyclohexanol reductases, including levodione reductase, classical (c) SDRs; Cyloclohexanol ...
6-151 1.26e-05

cyclohexanol reductases, including levodione reductase, classical (c) SDRs; Cyloclohexanol reductases,including (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase of Corynebacterium aquaticum, catalyze the reversible oxidoreduction of hydroxycyclohexanone derivatives. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187591 [Multi-domain]  Cd Length: 257  Bit Score: 45.59  E-value: 1.26e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRdlcRLFSGDVVLTARDVTRG--QAAVQQLQAEGLSPRFHQL--DIDDLQSIRALRDFLRKEYG 81
Cdd:cd05330   5 VVLITGGGSGLGLATAV---RLAKEGAKLSLVDLNEEglEAAKAALLEIAPDAEVLLIkaDVSDEAQVEAYVDATVEQFG 81
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
3BHJ_A       82 GLDVLVNNAGIAFKVA-----DPTPFHIQAEVTMKTNFFGTRDVctelLPLIKPQ--GRVVNVSSIMSVRALKSCSP 151
Cdd:cd05330  82 RIDGFFNNAGIEGKQNltedfGADEFDKVVSINLRGVFYGLEKV----LKVMREQgsGMIVNTASVGGIRGVGNQSG 154
KR_FAS_SDR_x cd05274
ketoreductase (KR) and fatty acid synthase (FAS), complex (x) SDRs; Ketoreductase, a module of ...
8-143 1.46e-05

ketoreductase (KR) and fatty acid synthase (FAS), complex (x) SDRs; Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. In some instances, such as porcine FAS, an enoyl reductase (ER) module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consist of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthase uses a dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-KR, forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-ER. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187582 [Multi-domain]  Cd Length: 375  Bit Score: 45.84  E-value: 1.46e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        8 LVTGGNKGIGLAIVRDLCRLFSGDVVLTARDV--TRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEyGGLDV 85
Cdd:cd05274 154 LITGGLGGLGLLVARWLAARGARHLVLLSRRGpaPRAAARAALLRAGGARVSVVRCDVTDPAALAALLAELAAG-GPLAG 232
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       86 LVNNAGIAFK--VADPTPFHIQAEVTMKTNffGTRDVCtELLPLiKPQGRVVNVSSIMSV 143
Cdd:cd05274 233 VIHAAGVLRDalLAELTPAAFAAVLAAKVA--GALNLH-ELTPD-LPLDFFVLFSSVAAL 288
PRK07775 PRK07775
SDR family oxidoreductase;
7-144 1.73e-05

SDR family oxidoreductase;


Pssm-ID: 181113 [Multi-domain]  Cd Length: 274  Bit Score: 45.13  E-value: 1.73e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVL 86
Cdd:PRK07775  13 ALVAGASSGIGAATAIELAAA-GFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGEIEVL 91
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
3BHJ_A        87 VNNAG-IAFKVA---DPTPFHIQAEVtmktNFFGTRDVCTELLP--LIKPQGRVVNVSSIMSVR 144
Cdd:PRK07775  92 VSGAGdTYFGKLheiSTEQFESQVQI----HLVGANRLATAVLPgmIERRRGDLIFVGSDVALR 151
RhaD COG3347
Rhamnose utilisation protein RhaD, predicted bifunctional aldolase and dehydrogenase ...
5-98 1.77e-05

Rhamnose utilisation protein RhaD, predicted bifunctional aldolase and dehydrogenase [Carbohydrate transport and metabolism];


Pssm-ID: 442576 [Multi-domain]  Cd Length: 674  Bit Score: 45.68  E-value: 1.77e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        5 HVALVTGGNKGIGLAIVRdlcRLFS--GDVVLTARDvtrgQAAVQQLQAEgLSPRFHQLDIDDLQSIRALRDFLRK---- 78
Cdd:COG3347 426 RVALVTGGAGGIGRATAA---RLAAegAAVVVADLD----GEAAEAAAAE-LGGGYGADAVDATDVDVTAEAAVAAafgf 497
                        90       100
                ....*....|....*....|...
3BHJ_A       79 ---EYGGLDVLVNNAGIAFKVAD 98
Cdd:COG3347 498 aglDIGGSDIGVANAGIASSSPE 520
KR pfam08659
KR domain; This enzymatic domain is part of bacterial polyketide synthases and catalyzes the ...
8-92 2.24e-05

KR domain; This enzymatic domain is part of bacterial polyketide synthases and catalyzes the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.


Pssm-ID: 430138 [Multi-domain]  Cd Length: 180  Bit Score: 44.09  E-value: 2.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A          8 LVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVT---RGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:pfam08659   4 LITGGLGGLGRELARWLAERGARHLVLLSRSAAprpDAQALIAELEARGVEVVVVACDVSDPDAVAALLAEIKAEGPPIR 83

                  ....*...
3BHJ_A         85 VLVNNAGI 92
Cdd:pfam08659  84 GVIHAAGV 91
PRK07577 PRK07577
SDR family oxidoreductase;
7-139 3.21e-05

SDR family oxidoreductase;


Pssm-ID: 181044 [Multi-domain]  Cd Length: 234  Bit Score: 43.95  E-value: 3.21e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTrgqaavqqlqaEGLSPRFHQLDIDDL-QSIRALRDFLrkEYGGLDV 85
Cdd:PRK07577   6 VLVTGATKGIGLALSLRLANL-GHQVIGIARSAI-----------DDFPGELFACDLADIeQTAATLAQIN--EIHPVDA 71
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
3BHJ_A        86 LVNNAGIAFkvadPTPF------HIQAevTMKTNFFGTRDVCTELLP--LIKPQGRVVNVSS 139
Cdd:PRK07577  72 IVNNVGIAL----PQPLgkidlaALQD--VYDLNVRAAVQVTQAFLEgmKLREQGRIVNICS 127
PRK08993 PRK08993
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;
6-142 3.94e-05

2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;


Pssm-ID: 181605 [Multi-domain]  Cd Length: 253  Bit Score: 44.09  E-value: 3.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVltARDVTRGQAAVQQLQAEG---LSPRFHQLDIDDLQSI--RALrdflrKE 79
Cdd:PRK08993  12 VAVVTGCDTGLGQGMALGLAE--AGcDIV--GINIVEPTETIEQVTALGrrfLSLTADLRKIDGIPALleRAV-----AE 82
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
3BHJ_A        80 YGGLDVLVNNAGIaFKVADPTPFHIQ-----AEVTMKTNFFGTRDVCTELLPLIKpQGRVVNVSSIMS 142
Cdd:PRK08993  83 FGHIDILVNNAGL-IRREDAIEFSEKdwddvMNLNIKSVFFMSQAAAKHFIAQGN-GGKIINIASMLS 148
Tthb094_like_SDR_c cd11730
Tthb094 and related proteins, classical (c) SDRs; Tthb094 from Thermus Thermophilus is a ...
7-265 6.18e-05

Tthb094 and related proteins, classical (c) SDRs; Tthb094 from Thermus Thermophilus is a classical SDR which binds NADP. Members of this subgroup contain the YXXXK active site characteristic of SDRs. Also, an upstream Asn residue of the canonical catalytic tetrad is partially conserved in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212496 [Multi-domain]  Cd Length: 206  Bit Score: 42.89  E-value: 6.18e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        7 ALVTGGNKGIGLAIVRDLcRLFSGDVVLTARDvtrgQAAVQQLqAEGLSPRFHQLDIDDLQSIRALRdflrKEYGGLDVL 86
Cdd:cd11730   1 ALILGATGGIGRALARAL-AGRGWRLLLSGRD----AGALAGL-AAEVGALARPADVAAELEVWALA----QELGPLDLL 70
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A       87 VNNAGIAFK--VADPTPfhIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSimsvralkscspelqqkfRSETITe 164
Cdd:cd11730  71 VYAAGAILGkpLARTKP--AAWRRILDANLTGAALVLKHALALLAAGARLVFLGA------------------YPELVM- 129
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A      165 eeLVGLmnkfvedtkkgvhqkegwpsSAYGVTKIGVTVLSRIhARKlsEQRKGDKILLNaccPGWVRTDM-----AGPKA 239
Cdd:cd11730 130 --LPGL--------------------SAYAAAKAALEAYVEV-ARK--EVRGLRLTLVR---PPAVDTGLwappgRLPKG 181
                       250       260
                ....*....|....*....|....*.
3BHJ_A      240 TKSPEEGAEtpvylALLPPDAEGPHG 265
Cdd:cd11730 182 ALSPEDVAA-----AILEAHQGEPQG 202
hydroxyacyl-CoA-like_DH_SDR_c-like cd05353
(3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs; Beta oxidation of fatty acids ...
6-139 6.52e-05

(3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs; Beta oxidation of fatty acids in eukaryotes occurs by a four-reaction cycle, that may take place in mitochondria or in peroxisomes. (3R)-hydroxyacyl-CoA dehydrogenase is part of rat peroxisomal multifunctional MFE-2, it is a member of the NAD-dependent SDRs, but contains an additional small C-terminal domain that completes the active site pocket and participates in dimerization. The atypical, additional C-terminal extension allows for more extensive dimerization contact than other SDRs. MFE-2 catalyzes the second and third reactions of the peroxisomal beta oxidation cycle. Proteins in this subgroup have a typical catalytic triad, but have a His in place of the usual upstream Asn. This subgroup also contains members identified as 17-beta-hydroxysteroid dehydrogenases, including human peroxisomal 17-beta-hydroxysteroid dehydrogenase type 4 (17beta-HSD type 4, aka MFE-2, encoded by HSD17B4 gene) which is involved in fatty acid beta-oxidation and steroid metabolism. This subgroup also includes two SDR domains of the Neurospora crassa and Saccharomyces cerevisiae multifunctional beta-oxidation protein (MFP, aka Fox2). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187611 [Multi-domain]  Cd Length: 250  Bit Score: 43.46  E-value: 6.52e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLA------------IVRDLcrlfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSI--RA 71
Cdd:cd05353   7 VVLVTGAGGGLGRAyalafaergakvVVNDL----GGDRKGSGKSSSAADKVVDEIKAAGGKAVANYDSVEDGEKIvkTA 82
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
3BHJ_A       72 LrdflrKEYGGLDVLVNNAGI----AFKVADPTPFHIQAEVTMKTNFFGTRDVctelLPLIKPQ--GRVVNVSS 139
Cdd:cd05353  83 I-----DAFGRVDILVNNAGIlrdrSFAKMSEEDWDLVMRVHLKGSFKVTRAA----WPYMRKQkfGRIINTSS 147
PRK06200 PRK06200
2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
6-92 7.40e-05

2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional


Pssm-ID: 235739 [Multi-domain]  Cd Length: 263  Bit Score: 43.02  E-value: 7.40e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVR--------------------DLCRLFSGDVVLTARDVTRG---QAAVQQlqaeglsprfhqld 62
Cdd:PRK06200   8 VALITGGGSGIGRALVErflaegarvavlersaeklaSLRQRFGDHVLVVEGDVTSYadnQRAVDQ-------------- 73
                         90       100       110
                 ....*....|....*....|....*....|
3BHJ_A        63 iddlqsirALRDFlrkeyGGLDVLVNNAGI 92
Cdd:PRK06200  74 --------TVDAF-----GKLDCFVGNAGI 90
PRK05867 PRK05867
SDR family oxidoreductase;
7-237 8.50e-05

SDR family oxidoreductase;


Pssm-ID: 135631 [Multi-domain]  Cd Length: 253  Bit Score: 43.10  E-value: 8.50e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVrdLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK05867  12 ALITGASTGIGKRVA--LAYVEAGaQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGIDI 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        86 LVNNAGIafkvadptpFHIQAEVTMktnffgtrdvctellPLIKPQgRV--VNVSSIMsVRALKSCSPELQQKFRSETIT 163
Cdd:PRK05867  90 AVCNAGI---------ITVTPMLDM---------------PLEEFQ-RLqnTNVTGVF-LTAQAAAKAMVKQGQGGVIIN 143
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
3BHJ_A       164 EEELVG-LMNkfvedtkkgVHQKEGwpssAYGVTKIGVTVLSRIHARKLSEQrkgdKILLNACCPGWVRTDMAGP 237
Cdd:PRK05867 144 TASMSGhIIN---------VPQQVS----HYCASKAAVIHLTKAMAVELAPH----KIRVNSVSPGYILTELVEP 201
SDR_c10 cd05373
classical (c) SDR, subgroup 10; This subgroup resembles the classical SDRs, but has an ...
6-145 9.57e-05

classical (c) SDR, subgroup 10; This subgroup resembles the classical SDRs, but has an incomplete match to the canonical glycine rich NAD-binding motif and lacks the typical active site tetrad (instead of the critical active site Tyr, it has Phe, but contains the nearby Lys). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187631 [Multi-domain]  Cd Length: 238  Bit Score: 42.75  E-value: 9.57e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTR-GQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:cd05373   1 VAAVVGAGDGLGAAIARRFAA--EGfSVALAARREAKlEALLVDIIRDAGGSAKAVPTDARDEDEVIALFDLIEEEIGPL 78
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
3BHJ_A       84 DVLVNNAG--IAFKVADPTP--FHIQAEVTMKTNFFGTRDVCTELLPliKPQGRVVNVSSIMSVRA 145
Cdd:cd05373  79 EVLVYNAGanVWFPILETTPrvFEKVWEMAAFGGFLAAREAAKRMLA--RGRGTIIFTGATASLRG 142
PRK09134 PRK09134
SDR family oxidoreductase;
6-92 1.27e-04

SDR family oxidoreductase;


Pssm-ID: 236389 [Multi-domain]  Cd Length: 258  Bit Score: 42.61  E-value: 1.27e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVT-RGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:PRK09134  11 AALVTGAARRIGRAIALDLAA--HGfDVAVHYNRSRdEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALGPI 88

                 ....*....
3BHJ_A        84 DVLVNNAGI 92
Cdd:PRK09134  89 TLLVNNASL 97
PRK08415 PRK08415
enoyl-[acyl-carrier-protein] reductase FabI;
46-144 1.77e-04

enoyl-[acyl-carrier-protein] reductase FabI;


Pssm-ID: 181416 [Multi-domain]  Cd Length: 274  Bit Score: 42.04  E-value: 1.77e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        46 VQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPF-HIQAE---VTMKTNFFGTRDVC 121
Cdd:PRK08415  47 VEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLGKIDFIVHSVAFAPKEALEGSFlETSKEafnIAMEISVYSLIELT 126
                         90       100
                 ....*....|....*....|...
3BHJ_A       122 TELLPLIKPQGRVVNVSSIMSVR 144
Cdd:PRK08415 127 RALLPLLNDGASVLTLSYLGGVK 149
PRK06924 PRK06924
(S)-benzoin forming benzil reductase;
4-92 1.79e-04

(S)-benzoin forming benzil reductase;


Pssm-ID: 180753 [Multi-domain]  Cd Length: 251  Bit Score: 41.98  E-value: 1.79e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         4 IHVALVTGGNKGIGLAIVRDLcrLFSGDVVLTardVTRGQAAVQQLQAEGLSPR--FHQLDIDDLQSI-RALRDFLR--- 77
Cdd:PRK06924   1 MRYVIITGTSQGLGEAIANQL--LEKGTHVIS---ISRTENKELTKLAEQYNSNltFHSLDLQDVHELeTNFNEILSsiq 75
                         90
                 ....*....|....*.
3BHJ_A        78 -KEYGGLdVLVNNAGI 92
Cdd:PRK06924  76 eDNVSSI-HLINNAGM 90
PRK07102 PRK07102
SDR family oxidoreductase;
8-140 1.96e-04

SDR family oxidoreductase;


Pssm-ID: 180838 [Multi-domain]  Cd Length: 243  Bit Score: 41.83  E-value: 1.96e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         8 LVTGGNKGIGLAIVRDL----CRLFsgdvvLTARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDLQSIRALRDFLRKEygg 82
Cdd:PRK07102   5 LIIGATSDIARACARRYaaagARLY-----LAARDVERLERLADDLRARGaVAVSTHELDILDTASHAAFLDSLPAL--- 76
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
3BHJ_A        83 LDVLVnnagIAF------KVADPTPFHIQAEvtMKTNFFGTRDVCTELLPLIKPQGR--VVNVSSI 140
Cdd:PRK07102  77 PDIVL----IAVgtlgdqAACEADPALALRE--FRTNFEGPIALLTLLANRFEARGSgtIVGISSV 136
Lin1944_like_SDR_c cd11731
Lin1944 and related proteins, classical (c) SDRs; Lin1944 protein from Listeria Innocua is a ...
7-150 2.58e-04

Lin1944 and related proteins, classical (c) SDRs; Lin1944 protein from Listeria Innocua is a classical SDR, it contains a glycine-rich motif similar to the canonical motif of the SDR NAD(P)-binding site. However, the typical SDR active site residues are absent in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212497 [Multi-domain]  Cd Length: 198  Bit Score: 41.03  E-value: 2.58e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        7 ALVTGGNKGIGLAIVRDLCRlfSGDVVLTArdvtrgqaavqqlqaeGLSPRFHQLDIDDLQSIRALrdFlrKEYGGLDVL 86
Cdd:cd11731   1 IIVIGATGTIGLAVAQLLSA--HGHEVITA----------------GRSSGDYQVDITDEASIKAL--F--EKVGHFDAI 58
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
3BHJ_A       87 VNNAGIAFKV--ADPTPfhIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCS 150
Cdd:cd11731  59 VSTAGDAEFAplAELTD--ADFQRGLNSKLLGQINLVRHGLPYLNDGGSITLTSGILAQRPIPGGA 122
PRK08251 PRK08251
SDR family oxidoreductase;
8-146 3.21e-04

SDR family oxidoreductase;


Pssm-ID: 181324 [Multi-domain]  Cd Length: 248  Bit Score: 41.07  E-value: 3.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         8 LVTGGNKGIGlaivRDLCRLFSG---DVVLTARDVTRGQAAVQQLQAE--GLSPRFHQLDIDDLQSIRALRDFLRKEYGG 82
Cdd:PRK08251   6 LITGASSGLG----AGMAREFAAkgrDLALCARRTDRLEELKAELLARypGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
3BHJ_A        83 LDVLVNNAGIAfKVADPTPFHIQA-EVTMKTNFFGTRDVCTELLPLIKPQGR--VVNVSSIMSVRAL 146
Cdd:PRK08251  82 LDRVIVNAGIG-KGARLGTGKFWAnKATAETNFVAALAQCEAAMEIFREQGSghLVLISSVSAVRGL 147
sepiapter_red TIGR01500
sepiapterin reductase; This model describes sepiapterin reductase, a member of the short chain ...
6-150 9.35e-04

sepiapterin reductase; This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.


Pssm-ID: 273660 [Multi-domain]  Cd Length: 256  Bit Score: 39.90  E-value: 9.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A          6 VALVTGGNKGIGLAIVRDL--CRLFSG-DVVLTARDvtrgQAAVQQLQAEGLSPRfHQLDID----DLQSIRALRDFLR- 77
Cdd:TIGR01500   2 VCLVTGASRGFGRTIAQELakCLKSPGsVLVLSARN----DEALRQLKAEIGAER-SGLRVVrvslDLGAEAGLEQLLKa 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         78 -------KEYGGLdVLVNNAGIAF---KVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKP-QG---RVVNVSSIMSV 143
Cdd:TIGR01500  77 lrelprpKGLQRL-LLINNAGTLGdvsKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDsPGlnrTVVNISSLCAI 155

                  ....*..
3BHJ_A        144 RALKSCS 150
Cdd:TIGR01500 156 QPFKGWA 162
SDH_SDR_c_like cd05322
Sorbitol 6-phosphate dehydrogenase (SDH), classical (c) SDRs; Sorbitol 6-phosphate ...
6-116 1.07e-03

Sorbitol 6-phosphate dehydrogenase (SDH), classical (c) SDRs; Sorbitol 6-phosphate dehydrogenase (SDH, aka glucitol 6-phosphate dehydrogenase) catalyzes the NAD-dependent interconversion of D-fructose 6-phosphate to D-sorbitol 6-phosphate. SDH is a member of the classical SDRs, with the characteristic catalytic tetrad, but without a complete match to the typical NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187583 [Multi-domain]  Cd Length: 257  Bit Score: 39.76  E-value: 1.07e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRlfSG-DVVLTARDVTRGQAAVQQLQAE-GLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83
Cdd:cd05322   4 VAVVIGGGQTLGEFLCHGLAE--AGyDVAVADINSENAEKVADEINAEyGEKAYGFGADATNEQSVIALSKGVDEIFKRV 81
                        90       100       110
                ....*....|....*....|....*....|....
3BHJ_A       84 DVLVNNAGIAfKVADPTPFHIQA-EVTMKTNFFG 116
Cdd:cd05322  82 DLLVYSAGIA-KSAKITDFELGDfDRSLQVNLVG 114
fabG PRK06550
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
6-145 1.43e-03

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 180617 [Multi-domain]  Cd Length: 235  Bit Score: 39.18  E-value: 1.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLcrLFSGDVVLtardvtrgqaAVQQLQAEGLSPRFH--QLDI-DDLQSiralrdfLRKEYGG 82
Cdd:PRK06550   7 TVLITGAASGIGLAQARAF--LAQGAQVY----------GVDKQDKPDLSGNFHflQLDLsDDLEP-------LFDWVPS 67
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
3BHJ_A        83 LDVLVNNAGI--AFK----VADPTPFHIqaevtMKTNFFGTRDVCTELLPLIKPQGR--VVNVSSIMSVRA 145
Cdd:PRK06550  68 VDILCNTAGIldDYKplldTSLEEWQHI-----FDTNLTSTFLLTRAYLPQMLERKSgiIINMCSIASFVA 133
PRK07041 PRK07041
SDR family oxidoreductase;
8-150 1.50e-03

SDR family oxidoreductase;


Pssm-ID: 235914 [Multi-domain]  Cd Length: 230  Bit Score: 38.86  E-value: 1.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         8 LVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQaEGLSPRFHQLDIDDLQSIRALrdFlrKEYGGLDVLV 87
Cdd:PRK07041   1 LVVGGSSGIGLALARAFAAE-GARVTIASRSRDRLAAAARALG-GGAPVRTAALDITDEAAVDAF--F--AEAGPFDHVV 74
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        88 NNAGI-------AFKVADptpfhiqAEVTMKTNFFGTRDVCTEllPLIKPQGRVVNVSSIMSVRALKSCS 150
Cdd:PRK07041  75 ITAADtpggpvrALPLAA-------AQAAMDSKFWGAYRVARA--ARIAPGGSLTFVSGFAAVRPSASGV 135
SDH_SDR_c cd05363
Sorbitol dehydrogenase (SDH), classical (c) SDR; This bacterial subgroup includes Rhodobacter ...
6-97 1.69e-03

Sorbitol dehydrogenase (SDH), classical (c) SDR; This bacterial subgroup includes Rhodobacter sphaeroides SDH, and other SDHs. SDH preferentially interconverts D-sorbitol (D-glucitol) and D-fructose, but also interconverts L-iditol/L-sorbose and galactitol/D-tagatose. SDH is NAD-dependent and is a dimeric member of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187621 [Multi-domain]  Cd Length: 254  Bit Score: 39.14  E-value: 1.69e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPrfhQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:cd05363   5 TALITGSARGIGRAFAQAYVRE-GARVAIADINLEAARATAAEIGPAACAI---SLDVTDQASIDRCVAALVDRWGSIDI 80
                        90
                ....*....|..
3BHJ_A       86 LVNNAGiAFKVA 97
Cdd:cd05363  81 LVNNAA-LFDLA 91
PRK12744 PRK12744
SDR family oxidoreductase;
6-136 1.79e-03

SDR family oxidoreductase;


Pssm-ID: 183716 [Multi-domain]  Cd Length: 257  Bit Score: 38.95  E-value: 1.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSGDVVL---TARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 82
Cdd:PRK12744  10 VVLIAGGAKNLGGLIARDLAAQGAKAVAIhynSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAAFGR 89
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        83 LDVLVNNAGIAFKvaDPTPFHIQAE------VTMKTNFFgtrdvctellpLIKPQGRVVN 136
Cdd:PRK12744  90 PDIAINTVGKVLK--KPIVEISEAEydemfaVNSKSAFF-----------FIKEAGRHLN 136
PRK09009 PRK09009
SDR family oxidoreductase;
8-92 1.81e-03

SDR family oxidoreductase;


Pssm-ID: 181609 [Multi-domain]  Cd Length: 235  Bit Score: 38.89  E-value: 1.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         8 LVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRgqaavQQLQAEGLSprFHQLDIDDLQSIRAlrdfLRKEYGGLDVLV 87
Cdd:PRK09009   4 LIVGGSGGIGKAMVKQLLERYPDATVHATYRHHK-----PDFQHDNVQ--WHALDVTDEAEIKQ----LSEQFTQLDWLI 72

                 ....*
3BHJ_A        88 NNAGI 92
Cdd:PRK09009  73 NCVGM 77
PRK06720 PRK06720
hypothetical protein; Provisional
6-92 1.98e-03

hypothetical protein; Provisional


Pssm-ID: 180669 [Multi-domain]  Cd Length: 169  Bit Score: 38.03  E-value: 1.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK06720  18 VAIVTGGGIGIGRNTALLLAKQ-GAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSRIDM 96

                 ....*..
3BHJ_A        86 LVNNAGI 92
Cdd:PRK06720  97 LFQNAGL 103
PRK06483 PRK06483
dihydromonapterin reductase; Provisional
8-90 2.18e-03

dihydromonapterin reductase; Provisional


Pssm-ID: 180586 [Multi-domain]  Cd Length: 236  Bit Score: 38.76  E-value: 2.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         8 LVTGGNKGIGLAIVRDLcrLFSG-DVVLTARdvtRGQAAVQQLQAEGLSprFHQLDIDDLQSIRALRDFLRKEYGGLDVL 86
Cdd:PRK06483   6 LITGAGQRIGLALAWHL--LAQGqPVIVSYR---THYPAIDGLRQAGAQ--CIQADFSTNAGIMAFIDELKQHTDGLRAI 78

                 ....
3BHJ_A        87 VNNA 90
Cdd:PRK06483  79 IHNA 82
HSDL2_SDR_c cd09762
human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs; This subgroup ...
9-138 4.30e-03

human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs; This subgroup includes human HSDL2 and related protens. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187663 [Multi-domain]  Cd Length: 243  Bit Score: 37.81  E-value: 4.30e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        9 VTGGNKGIGLAIVRDLCRlFSGDVVLTARD----------VTRGQAAVQQLQAEGLSPRfhqLDIDDLQSIRALRDFLRK 78
Cdd:cd09762   8 ITGASRGIGKAIALKAAR-DGANVVIAAKTaephpklpgtIYTAAEEIEAAGGKALPCI---VDIRDEDQVRAAVEKAVE 83
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
3BHJ_A       79 EYGGLDVLVNNA-GIAFKVADPTPFHiQAEVTMKTNFFGTRDVCTELLPLIK--PQGRVVNVS 138
Cdd:cd09762  84 KFGGIDILVNNAsAISLTGTLDTPMK-RYDLMMGVNTRGTYLCSKACLPYLKksKNPHILNLS 145
BphB-like_SDR_c cd05348
cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs; cis-biphenyl-2, ...
6-92 4.33e-03

cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs; cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB) is a classical SDR, it is of particular importance for its role in the degradation of biphenyl/polychlorinated biphenyls(PCBs); PCBs are a significant source of environmental contamination. This subgroup also includes Pseudomonas putida F1 cis-biphenyl-1,2-dihydrodiol-1,2-dehydrogenase (aka cis-benzene glycol dehydrogenase, encoded by the bnzE gene), which participates in benzene metabolism. In addition it includes Pseudomonas sp. C18 putative 1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase (aka dibenzothiophene dihydrodiol dehydrogenase, encoded by the doxE gene) which participates in an upper naphthalene catabolic pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187606 [Multi-domain]  Cd Length: 257  Bit Score: 37.72  E-value: 4.33e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        6 VALVTGGNKGIGLAIVR--------------------DLCRLFSGDVVLTARDVTrgqaavqqlqaeglsprfhqlDIDD 65
Cdd:cd05348   6 VALITGGGSGLGRALVErfvaegakvavldrsaekvaELRADFGDAVVGVEGDVR---------------------SLAD 64
                        90       100
                ....*....|....*....|....*..
3BHJ_A       66 LQsiRALRDFLRKeYGGLDVLVNNAGI 92
Cdd:cd05348  65 NE--RAVARCVER-FGKLDCFIGNAGI 88
NDUFA9_like_SDR_a cd05271
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, ...
5-92 4.60e-03

NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs; This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.


Pssm-ID: 187579 [Multi-domain]  Cd Length: 273  Bit Score: 37.61  E-value: 4.60e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        5 HVALVTGGNKGIGLAIVRDLCRlfSG-DVVLtardVTRGQAAVQQLQAEGLSPR--FHQLDIDDLQSIRALRDflrkeyg 81
Cdd:cd05271   1 MVVTVFGATGFIGRYVVNRLAK--RGsQVIV----PYRCEAYARRLLVMGDLGQvlFVEFDLRDDESIRKALE------- 67
                        90
                ....*....|.
3BHJ_A       82 GLDVLVNNAGI 92
Cdd:cd05271  68 GSDVVINLVGR 78
PLN02780 PLN02780
ketoreductase/ oxidoreductase
7-139 5.55e-03

ketoreductase/ oxidoreductase


Pssm-ID: 166421 [Multi-domain]  Cd Length: 320  Bit Score: 37.54  E-value: 5.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         7 ALVTGGNKGIGLAIVRDLCRlfSG-DVVLTAR------DVTRG-QAAVQQLQAEGLSPRFHQlDIDdlQSIRALRDFLRk 78
Cdd:PLN02780  56 ALVTGPTDGIGKGFAFQLAR--KGlNLVLVARnpdklkDVSDSiQSKYSKTQIKTVVVDFSG-DID--EGVKRIKETIE- 129
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
3BHJ_A        79 eygGLDV--LVNNAGIAFKVAdpTPFH-IQAEVT---MKTNFFGTRDVCTELLP--LIKPQGRVVNVSS 139
Cdd:PLN02780 130 ---GLDVgvLINNVGVSYPYA--RFFHeVDEELLknlIKVNVEGTTKVTQAVLPgmLKRKKGAIINIGS 193
PRK06139 PRK06139
SDR family oxidoreductase;
6-140 5.67e-03

SDR family oxidoreductase;


Pssm-ID: 235713 [Multi-domain]  Cd Length: 330  Bit Score: 37.78  E-value: 5.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A         6 VALVTGGNKGIGLAIVRDLCRLFSgDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 85
Cdd:PRK06139   9 VVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRIDV 87
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
3BHJ_A        86 LVNNAGI-AFKVADPTPFHIQAEVtMKTNFFGTRDVCTELLPLIKPQGRVVNVSSI 140
Cdd:PRK06139  88 WVNNVGVgAVGRFEETPIEAHEQV-IQTNLIGYMRDAHAALPIFKKQGHGIFINMI 142
ENR_SDR cd05372
Enoyl acyl carrier protein (ACP) reductase (ENR), divergent SDR; This bacterial subgroup of ...
7-145 6.71e-03

Enoyl acyl carrier protein (ACP) reductase (ENR), divergent SDR; This bacterial subgroup of ENRs includes Escherichia coli ENR. ENR catalyzes the NAD(P)H-dependent reduction of enoyl-ACP in the last step of fatty acid biosynthesis. De novo fatty acid biosynthesis is catalyzed by the fatty acid synthetase complex, through the serial addition of 2-carbon subunits. In bacteria and plants,ENR catalyzes one of six synthetic steps in this process. Oilseed rape ENR, and also apparently the NADH-specific form of Escherichia coli ENR, is tetrameric. Although similar to the classical SDRs, this group does not have the canonical catalytic tetrad, nor does it have the typical Gly-rich NAD-binding pattern. Such so-called divergent SDRs have a GXXXXXSXA NAD-binding motif and a YXXMXXXK (or YXXXMXXXK) active site motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187630 [Multi-domain]  Cd Length: 250  Bit Score: 37.18  E-value: 6.71e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        7 ALVTG--GNKGIGLAIVRDLCRLfSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84
Cdd:cd05372   4 ILITGiaNDRSIAWGIAKALHEA-GAELAFTYQPEALRKRVEKLAERLGESALVLPCDVSNDEEIKELFAEVKKDWGKLD 82
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
3BHJ_A       85 VLVNNAGIAFKVADPTPFHiqaEVTMKtNFFGTRD--------VCTELLPLIKPQGRVVNVSSIMSVRA 145
Cdd:cd05372  83 GLVHSIAFAPKVQLKGPFL---DTSRK-GFLKALDisayslvsLAKAALPIMNPGGSIVTLSYLGSERV 147
SDR_e_a cd05226
Extended (e) and atypical (a) SDRs; Extended or atypical short-chain dehydrogenases/reductases ...
7-91 9.05e-03

Extended (e) and atypical (a) SDRs; Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.


Pssm-ID: 187537 [Multi-domain]  Cd Length: 176  Bit Score: 36.23  E-value: 9.05e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3BHJ_A        7 ALVTGGNKGIGLAIVRDLCRLFSgDVVLTARDVTRGQAAVQQLQAeglsprFHQLDIDDLQSIRALRDflrkeygGLDVL 86
Cdd:cd05226   1 ILILGATGFIGRALARELLEQGH-EVTLLVRNTKRLSKEDQEPVA------VVEGDLRDLDSLSDAVQ-------GVDVV 66

                ....*
3BHJ_A       87 VNNAG 91
Cdd:cd05226  67 IHLAG 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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