Conserved Protein Domain Family
RFX5_DNA_bdg

?
pfam14621: RFX5_DNA_bdg 
RFX5 DNA-binding domain
RFX5 and RFXAP reveals molecular details associated with MHCII gene expression.
Statistics
?
PSSM-Id: 464220
Aligned: 9 rows
Threshold Bit Score: 272.162
Created: 25-Mar-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
XP_009429545 396 PGPGRAPPGGLTQPRGTE-NREVGIGGDQGPHDKGVKRTAEVPVSEASGQDPPAKAAKQDIEDTASDAKRKRGRPRKKSG 474
XP_007485481 389 PIPGRAPPEGLIQSQSLEkNREIGPGVDMGPRGKGVKRTAEVPIGDPRGQELAAKVLGQDTEEIGIDAKRKRGRPRKKSN 468
EDL85766     462 LGPGRVPPRAPILPRGTE-SREVGISGDPRPHDKGVKRTAEVPLSEASGQDPPVKEMKHETEDTVSEAKRKRGRPRKKTG 540
XP_012667228 394 HGPGRAPPGGLTQPQGTE-NREVGIGGDPGPYQKGVKRTAEVPMGEASGQDPPAKATKQDIEDTASDTKRKRGRPRKKSG 472
ELV10740     246 HKKSERP----SQLRGTE-NRELSIGGDLTPHDKGIKRTAEVPVIEASGQDPPAKAAKPDTEDTASDAKRKRGRPRKKSG 320
XP_004854051 412 PGPGRAPPGGLTQPQGPE-NREVGIGADPGSHDKGAKRTAEVPVSEASGQDPPAKAAKQDTEDPASDAKRKRGRPRKKSG 490
XP_015451049 395 PGPGQAPLAGL---QGPE-GRELGVGGGPRPQDRGVKRTAEVPGSEANGQDPAAKAAKQEVEGTGSDAKRKRGRPRKKSG 470
XP_013976192 400 PGPGQALPGVLAQPRVTE-NRELGIGGDPGPHDKGVKRTAEVPVCEAIGKDPLAKAAKQDIEDTGSDAKRKRGRPRKKLG 478
XP_012903413 397 PGPGQALPGALAQPQGPE-NREAGIGGDPGPHDKGVKRTAEVPVSEAIRQDPPAKAAKLDREDTGSDAKRKRGRPRKKSG 475
XP_009429545 475 GSGERNSTPLKSAAAMESAQSSRLPWETWGSGGEGNSAGGAERPgpmgeaeKGAVLAQGQGDGTVSKGGRGPGSRHTKEA 554
XP_007485481 469 GEGEQSSSPEKPLPATDAAHSPRVTPESWGFGRESDPARGLEKP-------RSVPIKLEKEEDTDFKRGKEPSVQHAKEI 541
EDL85766     541 GSGERNATPEKSAAAVNSPRSPRLLWETWGSKRENNLVGRPERPgavgeaqRETVLAQGQEDGAVSKGEKSLSSQEAKEA 620
XP_012667228 473 GSGEMNSTPEKSAAAMESGQSSRLPGELWGCGRENSLVGGPKRPvge--aeKGPVLTQDQEDGAVSKGGRDPRSRHAKEA 550
ELV10740     321 GNGERNSASEKSAAATDSTQSSRLPWETWGSAEKSSSAGGAETPgplgeteKGAVLAQGREDGVVSKGGKGPSSRHAKEA 400
XP_004854051 491 GSGERNSTPEKSAAAMDSAQSSRLPWETWGPRGESNSAGGVERPgpnreaeQRVVLPGGQEDGAVSKGGRVPSSRQAKEA 570
XP_015451049 471 GSRESNSTPDKAAAAVDSAQASRFPRETWASEAGSAPAGGSQSSgpggeaeRGTALAQGQEDGAVSRGGRGPSSRYAKGG 550
XP_013976192 479 GSRERNSPPDKSAAAMDSAPSSRLPRETWASGVGSSSAGRSGRPgplgqaeKGMVLVQGQEDGTVSKGGRGPSAQHAKEA 558
XP_012903413 476 GSKERNSPPDKS-AAMDSAQSPRLPQETWASGGESNSTGGSGRPgpvgeaeKGMVLAQGQEEGAVARGGRGPSSRHAKEA 554
XP_009429545 555 EDKIPlVPSKVSVIKGSRSQKEAFPLAKGE--VDTAPQGNKDLKEHVLQSSLSQEHKDPKAT 614
XP_007485481 542 GDISP-VTPKVSVIKGNKSWEEPPQSMGREaaAQTTGQGNKDPKGNMPQGSLFFGHKDPKAT 602
EDL85766     621 EDKIPpVTSKVSVIKG-RIQKEALQLVKGE--ADAATQGNKGLKGRVLQSSLTHEHKDPKAT 679
XP_012667228 551 EDKIPlVPSKVSVIKGSRSQKEALQLVKEE--VGPTVQGDKDLKGHMLQSS--HERKDPKAT 608
ELV10740     401 EDKIPlVTPKVSVIKGCRSQKEALQLVKGE--LDTAAQGNKDLKEHVLQSSSSHEHKDPKAT 460
XP_004854051 571 EDKIPlIAPKVSVIKGSRSQKGGLQVVKGG--AHTAAQGNKGLKGHVLPSSLTPECKDPKTT 630
XP_015451049 551 EDTTLlSPLKVSVIKGSRSHKEAALSVEGE--VDSAAQGNKDSKGHVPQSSSSQERRDPRAT 610
XP_013976192 559 EDKMPvVTSKVSVIKGSRSQ-ESLHLVKEE--VDTAAQGNKDLKGYVLPSSLFHVGKDPKAA 617
XP_012903413 555 EDKIPlVTSKVSVIKGSRSQKEALHLVKGE--VDTETQGNNDLKGHRLQNSLFHEGKDPKAT 614
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap