Conserved Protein Domain Family
RRM1_hnRPDL

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cd12758: RRM1_hnRPDL 
RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein D-like (hnRNP D-like or hnRNP DL) and similar proteins
This subgroup corresponds to the RRM1 of hnRNP DL (or hnRNP D-like), also termed AU-rich element RNA-binding factor, or JKT41-binding protein (protein laAUF1 or JKTBP), which is a dual functional protein that possesses DNA- and RNA-binding properties. It has been implicated in mRNA biogenesis at the transcriptional and post-transcriptional levels. hnRNP DL binds single-stranded DNA (ssDNA) or double-stranded DNA (dsDNA) in a non-sequencespecific manner, and interacts with poly(G) and poly(A) tenaciously. It contains two putative two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a glycine- and tyrosine-rich C-terminus.
Statistics
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PSSM-Id: 410152
Aligned: 6 rows
Threshold Bit Score: 165.92
Created: 20-Sep-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O14979       149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPvTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAK 224 human
Q5ZI72        31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPvTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRAK 106 chicken
Q7ZX83        27 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPvTGRSRGFGFVLFKDAVSVDKVLETNEHKLDGKLIDPKRAK 102 African clawed frog
XP_014339885  26 KMFIGGLSWDTSKKELTEYLSTFGEVVDCTIKTDPiTGRSRGFGFVLFRDSSSVDKVLEMKEHKLDGKLIDPKRAK 101 coelacanth
NP_001315423  31 KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPlTGRSRGFGFVLFKDAESVDRVLELTEHKLDGKLIDPKRAK 106 zebrafish
XP_007887159  43 KMFIGGLSWDTSKKDLTDYLSKFGEVVDCTIKMDPiTGRSRGFGFVLFREPASVDRVLELKEHKLDGRLIDPKRAK 118 elephant shark
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