Conserved Protein Domain Family
RRM1_SRSF5

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cd12595: RRM1_SRSF5 
RNA recognition motif 1 (RRM1) found in vertebrate serine/arginine-rich splicing factor 5 (SRSF5)
This subgroup corresponds to the RRM1 of SRSF5, also termed delayed-early protein HRS, or pre-mRNA-splicing factor SRp40, or splicing factor, arginine/serine-rich 5 (SFRS5). SFSF5 is an essential splicing regulatory serine/arginine (SR) protein that regulates both alternative splicing and basal splicing. It is the only SR protein efficiently selected from nuclear extracts (NE) by the splicing enhancer (ESE) and it is necessary for enhancer activation. SRSF5 also functions as a factor required for insulin-regulated splice site selection for protein kinase C (PKC) betaII mRNA. It is involved in the regulation of PKCbetaII exon inclusion by insulin via its increased phosphorylation by a phosphatidylinositol 3-kinase (PI 3-kinase) signaling pathway. Moreover, SRSF5 can regulate alternative splicing in exon 9 of glucocorticoid receptor pre-mRNA in a dose-dependent manner. SRSF5 contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a C-terminal RS domains rich in serine-arginine dipeptides. The specific RNA binding by SRSF5 requires the phosphorylation of its SR domain.
Statistics
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PSSM-Id: 410008
Aligned: 6 rows
Threshold Bit Score: 124.285
Created: 19-Sep-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q13243         5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARA 74  human
CAG31434       5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARA 74  chicken
NP_001085252   5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDARDADDAVYELDGKELCNERVTIEHARL 74  African clawed frog
AAH97003       5 RIFIGRLNPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKELCNERVTIEHARV 74  zebrafish
XP_005990828   9 RIFIGRLNPSAREKDVERFFKGYGKVRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCNERVTIEHARV 78  coelacanth
XP_007891460  41 RVFIGRLSPYATEQKVEKFFKGYGRIKEIDLKNGFGFVEFEDYRDADDAVYELDGKELCNERVTVEHART 110 elephant shark
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