2RS2,6C8U


Conserved Protein Domain Family
RRM1_MSI

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cd12576: RRM1_MSI 
Click on image for an interactive view with Cn3D
RNA recognition motif 1 (RRM1) found in RNA-binding protein Musashi homolog Musashi-1, Musashi-2 and similar proteins
This subfamily corresponds to the RRM1 in Musashi-1 and Musashi-2. Musashi-1 (also termed Msi1) is a neural RNA-binding protein putatively expressed in central nervous system (CNS) stem cells and neural progenitor cells, and associated with asymmetric divisions in neural progenitor cells. It is evolutionarily conserved from invertebrates to vertebrates. Musashi-1 is a homolog of Drosophila Musashi and Xenopus laevis nervous system-specific RNP protein-1 (Nrp-1). It has been implicated in the maintenance of the stem-cell state, differentiation, and tumorigenesis. It translationally regulates the expression of a mammalian numb gene by binding to the 3'-untranslated region of mRNA of Numb, encoding a membrane-associated inhibitor of Notch signaling, and further influences neural development. Moreover, Musashi-1 represses translation by interacting with the poly(A)-binding protein and competes for binding of the eukaryotic initiation factor-4G (eIF-4G). Musashi-2 (also termed Msi2) has been identified as a regulator of the hematopoietic stem cell (HSC) compartment and of leukemic stem cells after transplantation of cells with loss and gain of function of the gene. It influences proliferation and differentiation of HSCs and myeloid progenitors, and further modulates normal hematopoiesis and promotes aggressive myeloid leukemia. Both, Musashi-1 and Musashi-2, contain two conserved N-terminal tandem RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), along with other domains of unknown function.
Statistics
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PSSM-Id: 409990
Aligned: 10 rows
Threshold Bit Score: 154.912
Created: 13-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
RNA binding
Conserved site includes 19 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        # # #####                    # #        ### #                      #  # ####
2RS2_A        27 KMFIGGLSWqtTQEGLREYFgqfgevKECLVMrdpltkrsRGFGFVTFMdqaGVDKVLAqsrHELDSKTIDPKVAF 102 house mouse
NP_497799     46 KMFIGGLSWqtTAENLRDYFgrfgevNECMVMrdpatkraRGFGFITFVdpsSVDKVLNnreHELDGKKIDPKVAF 121 nematode
Q9VVE5        30 KMFIGGLSWqtSPESLRDYFgrygdiSEAMVMkdpttrrsRGFGFVTFSdpnSVDKVLTqgtHELDGKKVDPKVAF 105 Drosophila yakuba
NP_001158364  22 KMFIGGLSWqtTPDGLREYFskfgevTECMVMrdqatkrsRGFGFITFRdpaSVEKVLAqaaHELDQKKIDPKVAF 97  Saccoglossus kowale...
AEO33426      52 KMFIGGLSWqtAPEGLREYFskfgdiTEVMVMkdpstrrsRGFGFVTFSdpaSVDKVLAngpHELDGKKIDPKIAF 127 Amblyomma maculatum
EFX73024       3 KMFIGGLSWqtSAEGLREYFskfgdvTEVMVMkdpttrrsRGFGFVTFAdaaSVDKVLAsapHELDGKKIDPKVAF 78  common water flea
XP_001631942   1 KMFIGGLSWqtTAEGLRQHFekfgelKECVVMrdpvtkrsRGFGFLTFKdpkAVDVVLNsgaQELDGKKIDPKLAV 76  starlet sea anemone
6C8U_1        26 KMFIGGLSWqtSPDSLRDYFskfgeiRECMVMrdpttkrsRGFGFVTFAdpaSVDKVLGqphHELDSKTIDPKVAF 101 human
CCD76336      79 KMFIGGLSPttTSEGLRDYFqkygelREYMIMrdpltkrsRGFGFITFSdpvCVEKVLEtapHILDYKKIDPKLAV 154 Schistosoma mansoni
XP_002115015   5 KMFIGGLSWmtNTEKLREYFekygeiTECVIMhdpitkrsRGFGFVTFTdadNVEKVLQsgpHKLDDKNIDAKVAY 80  Trichoplax adhaerens

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