Conserved Protein Domain Family
RBD_KIF20B

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cd21786: RBD_KIF20B 
RAB6 binding domain (RBD) found in kinesin-like protein KIF20B, and similar proteins
KIF20B (also called cancer/testis antigen 90 (CT90), kinesin family member 20B, kinesin-related motor interacting with PIN1, or M-phase phosphoprotein 1 (MPP1)) is a plus-end-directed motor enzyme that is required for completion of cytokinesis. It is required for proper midbody organization and abscission in polarized cortical stem cells. KIF20B plays a role in the regulation of neuronal polarization by mediating the transport of specific cargos. It participates in the mobilization of SHTN1 (shootin 1) and in the accumulation of PIP3 in the growth cone of primary hippocampal neurons in a tubulin and actin-dependent manner. In the developing telencephalon, KIF20B cooperates with SHTN1 to promote both the transition from the multipolar to the bipolar stage and the radial migration of cortical neurons from the ventricular zone toward the superficial layer of the neocortex. KIF20B acts as an oncogene for promoting bladder cancer cell proliferation, apoptosis inhibition, and carcinogenic progression. This model corresponds to a conserved region in KIF20B that shows some sequence similarity to the RAB6 binding domain (RBD) of KIF20A. KIF20A-RBD is a dimer composed of two parallel alpha helices that form a right-handed coiled-coil additionally stabilized by an inter-helical cysteine bridge.
Statistics
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PSSM-Id: 409644
Aligned: 60 rows
Threshold Bit Score: 69.0454
Created: 21-Apr-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative RAB6putative
Feature 1:putative RAB6 binding site [polypeptide binding site]
Evidence:
  • Comment:based on structure of KIF20A-RAB6-binding domain (KIF20A-RBD) dimer with bound RAB6
  • Comment:two RAB6 molecules bind on opposite sides of the KIF20A-RBD dimer

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                              # ## ### ## ### #                  
Q96Q89        600 KIREEVTQEFTQYWAQREADFKETLLQEREILEENAERRLAIFKDLVGKCDTREEA 655  human
XP_014339534  600 RIRKEVTEELSQHFVQRDYDFSERLEKEKQLLEERSDERLEIYKDLVNKYTQYLEE 655  coelacanth
XP_007897883  627 KIREEAGQEMENYIAQWESNLSDRLKEDKQLMEDRTEKRFEIFQNLVKTFAAIDKE 682  elephant shark
XP_030841974  661 KIREEVCQEMADQLVEIEQDYNERLEEDKQRAEEVYEKRLEIYAKSVKKTRKRERN 716  Strongylocentrotus purpuratus
XP_006822722  629 TVREEVCREMAEQLVEIESNYSERLKEERLIAEEKCDKRIEIYTQSVQKSRKRARI 684  Saccoglossus kowalevskii
XP_029466575  614 KIREEVAQEFTQHFVQQENNFSECLKRERELLEDRCDERIKIFQNLISECAKEGST 669  two-lined caecilian
XP_030841971  661 KIREEVCQEMADQLVEIEQDYNERLEEDKQRAEEVYEKRLEIYAKSVKKTRKRERN 716  purple sea urchin
XP_030058911  614 KIREEVAKEFTEHFIQQENNFSEYLEREREVLEDRCDERVQILKNLITESTKEGST 669  Microcaecilia unicolor
XP_029187023  619 RIREEVCKEMAEQLVSIENAYSERVKMEVTAVEEKCDRRIELLTQSIKKNRKRTRI 674  Acropora millepora
PIK36837      647 QIRAEVCEEMAKQLVEIEASYNERLQEEKEIAEEVLEKRMEILTKSVKKTHSKRPR 702  Japanese sea cucumber

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