1OW0,1O0V,2QEJ,1HZH,1E4K,1I1A,1F6A


Conserved Protein Domain Family
IgC1_CH3_IgAGD_CH4_IgAEM

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cd05768: IgC1_CH3_IgAGD_CH4_IgAEM 
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CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin heavy alpha, gamma, and delta chains, and CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin heavy alpha, epsilon, and mu chains; member of the C1-set of Ig superfamily (IgSF) domains
The members here are composed of the third and fourth immunoglobulin constant domain (IgC) of alpha, delta, gamma and alpha, epsilon, and mu heavy chains, respectively. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each is composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) with three (alpha, delta and gamma) or four (epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Statistics
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PSSM-Id: 409425
Aligned: 31 rows
Threshold Bit Score: 112.044
Created: 10-Sep-2007
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
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Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:receptor binding site [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                          #                                          
1OW0_A    107 PEVHLLPPPSEELAlneLVTLTCLARGFsPKDVLVRWLQGSQELPr-eKYLTWASRqepsqgtttFAVTSILRVAAEDWK 185 human
S12838    350 LSITILPPQVEQELmemTVTLTCLVSDA-PYGITVSWKRGNVPLVs--YIQPTGPA---------DIVQSKVNISTQDWL 417 little skate
AAC12881  354 VKVSFLPPSPKQVLlgdTVTLTCVVTEA-PSGVNVTWTQGHMARQ---SARESRSA---------QRVTSELNVSTREWN 420 spotted ratfish
AAK07642  248 IRVNLLPPPIEQALleaTVTLTCIAFNV-PHDVNISWTRGERSLKs-nVVVQTREDp--------DSVVSKLNVSTQAWL 317 nurse shark
AAC12893  294 VKVSFLPPSQKQVLmesSVILTCIVTNS-PLDVNVDWTQGQTTLQs-gHGKQSATEp--------QEVISELNISTHDWI 363 spotted ratfish
P01867    234 PQVYILPPPAEQLSr-kDVSLTCLVVGFnPGDISVEWTSNGHTEE---NYKDTAPVlds---dgsYFIYSKLNMKTSKWE 306 house mouse
A34891    449 PTVFILAPAEQRNLs--TVTLICYAKDFyPEQVLISWLVDDQPVEt--DVPTTEVVkte----gtYSVFSQLTIPASDWD 520 ladyfish
P23735    310 PKVYLLAPPESSGE---SVTLTCYVKDFyPKEVAVSWLVNDKQVEevvGYEQNTTAvidr--nnlFSVYSQLIIKTADWN 384 channel catfish
AAX78210  466 PSVFMLPPLEHIKTe--TVTLTCYVKDFfPREVYVSWLVDDEEADskyKFHTTTPVend----gsYSAYGQLTLTLQQWK 539 orange-spotted gro...
P20761    232 PQVYVMGPPTEQLTe-qTVSLTCLTSGFlPNDIGVEWTSNGHIEK---NYKNTEPVmds---dgsFFMYSKLNVERSRWD 304 Norway rat
Feature 1            #        ## ## #         
1OW0_A    186 KGDTFSCMVGHEa---LPLAFTQKTIDRLAGK 214 human
S12838    418 SGDYFECAVSHAd---MPKPKTERINWKKGQH 446 little skate
AAC12881  421 GGKEFECVANHV----DMLTPKRGTISKKPDQ 448 spotted ratfish
AAK07642  318 SGDDFSCIVNHQd---LSTPLRSSIHKKEAGD 346 nurse shark
AAC12893  364 SGKEFNCIVSHEd---MPTPIREKIVKREVLH 392 spotted ratfish
P01867    307 KTDSFSCNVRHEg---LKNYYLKKTISRSPGL 335 house mouse
A34891    521 SGVVYSCAVHHE----TVMESVVKTIVRTTDS 548 ladyfish
P23735    385 SGSVFSCLVYHEsi-kDCVRHISRSIAKDSKT 415 channel catfish
AAX78210  540 NDDTVFSCAVHHesvvNTTRAIVRSIGHRTFE 571 orange-spotted grouper
P20761    305 SRAPFVCSVVHEg---LHNHHVEKSISRPPGK 333 Norway rat

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