Conserved Protein Domain Family
zf-SCNM1

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pfam15803: zf-SCNM1 (this model, PSSM-Id:406284 is obsolete and has been replaced by 464882)
Zinc-finger of sodium channel modifier 1
zf-SCNM1 is a C2H2 type zinc-finger conserved in eukaryotes found at the N-terminus of SCNM1, sodium channel modifier protein 1. Phylogenetic analysis of these zinc finger sequences places SCNM1 within the U1C subfamily of RNA binding proteins that is commonly found in RNA-processing proteins, suggesting that SCNM1 is involved in splicing activities.
Statistics
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PSSM-Id: 406284
Aligned: 18 rows
Threshold Bit Score: 23.8447
Created: 27-Apr-2021
Updated: 29-Sep-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CAF95147      44 CLVCSHRPVFDTVDMLSVHRKGKRHLE 70  spotted green pufferfish
XP_006349633  43 CIVCSHRPVLDTPLMLSVHVKGSSHRA 69  potato
CBI32454      43 CLLCANNPILDSPLMLSMHRKGSRHRA 69  wine grape
XP_009380903  50 CLVCPHNPILDTPLMLSVHNKGSRHIA 76  wild Malaysian banana
EDO46534      44 CLVCNHRPVFDTSAVLSIHRQGKKHLA 70  starlet sea anemone
XP_005996543  44 CAVCSYRPVFDTLDMLTVHRTGKKHLA 70  coelacanth
XP_001491760  44 CAICPHRPVLDTLAMLTAHRAGKKHLS 70  horse
OWK51931      44 CSLCPQRPVCDTLQTLLLHRAGRKHLD 70  Bengalese finch
XP_016658595  46 CMICIQRPIFDTINVLSIHRKGKKHLN 72  pea aphid
1_pfamImport   1 CLVCHGRPILDNIDILIIHRKGKKHLK 27 
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