Conserved Protein Domain Family
CTF_NFI

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pfam00859: CTF_NFI (this model, PSSM-Id:395689 is obsolete and has been replaced by 459967)
CTF/NF-I family transcription modulation region
Statistics
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PSSM-Id: 395689
Aligned: 11 rows
Threshold Bit Score: 276.404
Created: 22-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_018869994 249 QESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLGELQ-GHLAYDLNPa---STGLRRTLPSTSSs-gSKRHKSGSMEEDV 323 western lowland...
Q4SRP6       319 EDSFIKSGVFSVAELVRVARMPITLRAAVNFSMADMSsQPYYHDLNS----GVGLHRSLSSPPG---SKRPKTVSMDENM 391 spotted green p...
Q5VW26       209 EDSFVKSGVFNVSELVRVSRTPITQGTGVNFPIGEIPsQPYYHDMNS----GVNLQRSLSSPPS---SKRPKTISIDENM 281 human
XP_016846635 213 QDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLE-SPSYYNINQ----VALGRRSITSPPSsssTKRPK--SIDDSE 285 green anole
XP_018554091 261 QDCFVTSGVWNVAELVRVSQTPVATATGPNFSLADLD-SPGYYNINQ----VTLGRRSITSTPStssNKR-K--SIDDSE 332 barramundi perch
XP_016397727 217 QESFVTSGVFSVTELVQVSRTPVVTGTGPNFSLGELQ-GHLAYDLNPs---GVGMRRTLPSTSSs-gSKRHKSGSMEDDI 291 Sinocyclocheilu...
XP_011612716 207 QESFVTSGVFSVTELVHVSKTRVITVVGPGFSMGELH-GHLAYDLNPsvnqPVGLRRSLASTSSs-gSKRHKSGSMEDEV 284 torafugu
XP_030288726 235 qESFVTSGVFSVTELVQVSRTPVVTGVGPSFSMGELQ-GHLAYDLNQsvnqPVSLRRSLASTSSs-gSKRLKSGSMEEEA 312 gilthead seabream
XP_029907136 233 QDCFVTSGVWNVAELVRVSQTPVATASGPNFSLADLDsSPGYYNINQ----VALGRRSLASPPStssTKR-K--SLDDSE 305 pinecone soldie...
XP_023809833 257 QDSFVTPGVFTVAELVRVSQTPIAAGTGPNFSLADLD-SSSYYSMSP-----GAMRRPLPSTSSsssAKRIK--CMEEDV 328 Japanese medaka
XP_002938866 208 QESFVTSGVFSVTELIQVSRTPVVSGTGPNFSLGELQ-GHLAYDLNPt---GTGMRRTLPSTSSs-gSKRHKSGSMEDDI 282 tropical clawed...
XP_018869994 324 DTSPGGD-YY----TSPSSP-TSSSRNWtEDMEGGI-SSPvKKTEMDKSPFNSPSPQD-----------SPRLSSFTQHH 385 western lowland...
Q4SRP6       392 DTSPTGPdFY----SSPSSP-ASSRANW-HERDGDM-SSP-TMKKPDKPLFSPTSPQDs----------SPRLSAFPQPH 453 spotted green p...
Q5VW26       282 EPSPTGD-FY----PSPSSP-AAGSRTW-HERDQDM-SSPtTMKKPEKPLFSSASPQDs----------SPRLSTFPQHH 343 human
XP_016846635 286 MESPVDDvFYpgtgRSPAAG-SSQSSGWpNDVDAG----PaSLKKSGKLDFCSALSSHt----------TSPRMAFTHHP 350 green anole
XP_018554091 333 MESPVDDvFYs--gRSPAAGsSSQSSGWpNDVDAGL-SSPgSLKKPGKFDF-SALSSQt----------RSPRMAFTHHP 398 barramundi perch
XP_016397727 292 DTSPGGE-YY----TSPNSP-ASSSRNWqEEMEGGI-SPTvKKTEMD-----SPSPQEs----------SPRLG-FTQHH 348 Sinocyclocheilu...
XP_011612716 285 D-SP-GE-YY----HSP-SP-ASSSRNWtEDVEGGL-SPPvKKTEVD-----SP-PQKd----------SPRLGSFTQPH 338 torafugu
XP_030288726 313 D-SPGGE-YY----HSPSSP-ASSSRNWtDDMEGGL-SPPvKKAELD-----SPSPQEd----------SPRLGSFTQHH 369 gilthead seabream
XP_029907136 306 LESPTDDvFYp--gRSPAAS-SSQSSGWpNDMDAGL-SSPgSLKKPGKFDF-NALSSQt----------RSPRMAFTHHP 370 pinecone soldie...
XP_023809833 329 D-SPGEEsYYpsqgRSPGSG--SQASSW-HDVEPGMpSPPsTLKTSGRSGFCGPAPSPsgtsssssscsSSPRMAFT-HQ 403 Japanese medaka
XP_002938866 283 DTSPGGE-YY----TSPSSP-TGSNRNWaDDVEGGM-SPTvKKSELDKSPFHSPSPQDt----------SPRISGFTQHH 345 tropical clawed...
XP_018869994 386 RPVI--AVHSGIA-RSPH-PSSALHFPTTSILpQTASTYFPHTAIRYPPHLnPQDPLKDLVSlaC-DPASQQPGP----- 455 western lowland...
Q4SRP6       454 HPGLtgVGHSVIStRSPP-PHSPLQFSASAILpPAPSSYFPHTTIRYPPHLsPADPLKSYVP--SyDPSSPQSSQ----- 525 spotted green p...
Q5VW26       344 HPGIpgVAHSVIStRTPP-PPSPLPFPTQAILpPAPSSYFSHPTIRYPPHLnPQDTLKNYVP--SyDPSSPQTSQ----- 415 human
XP_016846635 351 LPVL-----AGVRpGSPRaTASALHFPSTSII-QQSSPYFTHPTIRYHHHH-GQDSLKEFVQfvCsDGSGQGSGQ----- 418 green anole
XP_018554091 399 LPML-----AGVRpGSPRaSASALHFPSPSII-QQSSPYFTHPTIRYHHHP-GQDPLKEFVQfvCaDGSGQAAGQ----- 466 barramundi perch
XP_016397727 349 RPVI--AVHSGIS-RGPH-PSSSLHFPGAPILpQTASTYFPHTAIRYPPHLsSQDPLKDLVSlaC-DPSNQQPSP----- 418 Sinocyclocheilu...
XP_011612716 339 RPVI--AVHSGLS-RSPH-PSPSLYFPSAP--------YFPHGAIRYPPHL-AQDPLKDLVSlaS-DPVDKPPSS----- 399 torafugu
XP_030288726 370 RPVI--AVHSGLS-RSPH-PSSALHFPSSS--------YFPHGAIRYPPHL-AQDPLKDLVSlaC-DPANQTPSS----- 430 gilthead seabream
XP_029907136 371 LPVL-----AGVRpGSPRaSASALHFPSSSII-QQSSPYFTHPTIRYHHH---QDPLKEFVQfvCtDGAGQPSAQ----- 436 pinecone soldie...
XP_023809833 404 RPVI-----AGPR-ASPHaPPSSLHFSSSPIL-QQPGSYFSHPAIRYHP----QETLKEFVQlvCpD-SAQQAGQvgfln 471 Japanese medaka
XP_002938866 346 RPVI--AVHSGLA-RSPH-TSTTLHFPTSSLLpQAASTYFPHTAIRYPPHLnPQDPLKDLVSlaC-ETSSQQPGP----- 415 tropical clawed...
XP_018869994 456 LNGSGQ--LKMPSHClsAQMLAPPp---------PGLPRLALPP-ATKP--ATTSEGgatsptspsY--------SPPD- 512 western lowland...
Q4SRP6       526 PNSSGQvvGKVPGHF--TPVLAPSph-------hGAVRPVSLSMpDTKPi-TTSTEG---------Y--------SAPG- 577 spotted green p...
Q5VW26       416 PNGSGQvvGKVPGHF--TPVLAPSph-------pSAVRPVTLSMtDTKPi-TTSTEGeaasptattY--------TASG- 476 human
XP_016846635 419 PNGSGQ--GKVTGSF-----LLPPp--------pPVARPVPLPMpDTKSt-STNPEGgaptptspsF--------SAPGs 474 green anole
XP_018554091 467 PNGSGQ--SKMPGSF-----LLPPp--------pPVARPVPLPMpDSKPn-STPPDGglsspaspsY--------STPG- 521 barramundi perch
XP_016397727 419 LNGSGQ--VKVSSHYisSQMLAPPl--------pPGLPRLTLPP-ESKSs-TTSADAaassptsptY--------SAPG- 477 Sinocyclocheilu...
XP_011612716 400 LNGSNH--VKVSSHYisSQLLVPPgptpslapppPSLHRPTLPA-ESKAttTTSSERgtnsptsptC--------STPG- 467 torafugu
XP_030288726 431 LNGSNQ--VKVPSHYisSQMLAPPgpaptlcpapSSLPRPTLPA-ESKAt-TTSSDGvtnsptpptY--------SAPG- 497 gilthead seabream
XP_029907136 437 PNGGGQ--SKMPGSF-----LLPPp--------pPVARPVPLPMpDSKPi-STPTDGglsspaspsYstpgstapNRFVg 500 pinecone soldie...
XP_023809833 472 PNGSSQ--GKVHNPFlpTPMLPPPpp-------pPMARPVPLPV-DAKPpsTSSTEGggnsptsptY--------STPT- 532 Japanese medaka
XP_002938866 416 LNGSGQ--VKVSSHYisTQMLAPPp---------PGMPRLSLSS-DTKS--TTASDGstssptsptY--------SAPS- 472 tropical clawed...
XP_018869994 513 TSPANRs-FVGLGPRDPAGIYQAQ---SWYL 539 western lowland gorilla
Q4SRP6       578 TPTANR--FVGLSPRDPAFLHQQQ---SWYL 603 spotted green pufferfish
Q5VW26       477 TSQANR--YVGLSPRDPSFLHQQQlricdwt 505 human
XP_016846635 475 SSSANR--FVGIGPRDGNFLNIPQqsqSWFL 503 green anole
XP_018554091 522 ATAPNR--FVGIGSRDNNFLNIPQqtqSWFL 550 barramundi perch
XP_016397727 478 TPPANRs-FVGIGSRDTGSLYQAQswylgn- 506 Sinocyclocheilus rhinocerous
XP_011612716 468 TPPSNCptFIGVTPQDAGELYQAQ---SWYL 495 torafugu
XP_030288726 498 TPPANRtsFVGVTPRDPGGLYQAQ---SWYL 525 gilthead seabream
XP_029907136 501 IGARD---------N---FLNIPQqtqSWFl 519 pinecone soldierfish
XP_023809833 533 TSPAQR--FVSVGPRDPGF-NIPQ---QPQw 557 Japanese medaka
XP_002938866 473 TPPTNRs-FVGLGPREPGSIYQAQ---SWYL 499 tropical clawed frog
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