1QU6,1X49


Conserved Protein Domain Family
DSRM_EIF2AK2_rpt1

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cd19903: DSRM_EIF2AK2_rpt1 
first double-stranded RNA binding motif of eukaryotic translation initiation factor 2-alpha kinase 2 (EIF2AK2) and similar proteins
EIF2AK2 (EC 2.7.11.1/EC 2.7.10.2; also known as interferon-induced, double-stranded RNA-activated protein kinase, eIF-2A protein kinase 2, interferon-inducible RNA-dependent protein kinase, P1/eIF-2A protein kinase, protein kinase RNA-activated (PKR), protein kinase R, tyrosine-protein kinase EIF2AK2, or p68 kinase) acts as an IFN-induced dsRNA-dependent serine/threonine-protein kinase which plays a key role in the innate immune response to viral infection and is also involved in the regulation of signal transduction, apoptosis, cell proliferation and differentiation. EIF2AK2 proteins contain two to three double-stranded RNA binding motifs (DSRMs). This model describes the first motif. DSRM is not sequence specific, but highly specific for dsRNAs of various origin and structure.
Statistics
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PSSM-Id: 380732
Aligned: 9 rows
Threshold Bit Score: 89.3705
Created: 24-Oct-2018
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative RNA
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on structure evidence that Homo sapiens TARBP2 (5N8L) binds siRNA.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        # ##  ##  ##    ##          #### #                ####  ##          
1QU6_A        13 GFFMEELNTYRQKqGVVLKYQELPnsGPPHDRRFTFQVIIDGrEFPEGEGRSKKEAKNAAAKLAVEIL 80  human
1X49_A        14 GFYMDKLNKYRQMhGVAITYKELStsGPPHDRRFTFQVLIDEkEFPEAKGRSKQEARNAAAKLAVDIL 81  house mouse
P19525         8 GFFMEELNTYRQKqGVVLKYQELPnsGPPHDRRFTFQVIIDGrEFPEGEGRSKKEAKNAAAKLAVEIL 75  human
NP_001107942   6 GNYTSLLNEYQQKtQCTVEFEEGPtdGPSHNKRFTMRAIVNGqKFPDGTGKTKKEAKQNAAKNALEGL 73  zebrafish
NP_001107942 211 NNYIAYLNNYCQKkKRVYDFKLVDriGPPHNPIFVYKVVMDGkEYPEAQGRNAKEAKQNAAQHAWSEI 278 zebrafish
NP_989818      3 RECMAKINRYCQKnKYKLDYVDVDmrGPSHDPEFEVVVKINGvKYGTGVGKSKKEAKAAAAAKTWDMI 70  chicken
XP_007907906 264 QNCIGELNQYCQKlKYSYDIIEVGksGPSHNLVLTCKVVVNGcDYPEASGKSKQEAKQKAAKLALEAL 331 elephant shark
XP_014342329  12 TNFVGRLKEYCDKyKLTTEYVQVEqsGPSHNPKFVFFVKIGEkRYPSATGKSKKEAQKKAAQLALEQM 79  coelacanth
XP_019222251   5 VNYVGKLNEYAHKwHSGVSYEEVGsdGPPHDKVFNLRAVIDGkAYPSGEGKTKKEAKQNAAKKALESL 72 

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