Conserved Protein Domain Family
DSRM_PRKRA_rpt3

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cd19892: DSRM_PRKRA_rpt3 
third double-stranded RNA binding motif of protein activator of the interferon-induced protein kinase (PRKRA) and similar proteins
PRKRA (also known as interferon-inducible double-stranded RNA-dependent protein kinase activator A, PKR-associated protein X (RAX), PKR-associating protein X, protein kinase, interferon-inducible double-stranded RNA-dependent activator, PACT, or HSD14) is a cellular activator for double-stranded RNA-dependent protein kinase during stress signaling. PRKRA contains three double-stranded RNA binding motifs (DSRMs). This model describes the third motif. DSRM is not sequence specific, but highly specific for dsRNAs of various origin and structure.
Statistics
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PSSM-Id: 380721
Aligned: 6 rows
Threshold Bit Score: 120.377
Created: 24-Oct-2018
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Dicer interfaceputative RNA
Feature 1:Dicer interface [polypeptide binding site]
Evidence:
  • Comment:Based on structure evidence that Homo sapiens Dicer (4WYQ) interacts with TRBP.
  • Comment:the endoribonuclease Dicer partners with double-stranded RNA-binding proteins (dsRBPs) TRBP and PACT to ensure fidelity in miRNA biogenesis

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                     #          ###     ### # ### ### ##              #  ##  ###
O75569       239 TDYIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIA 310 human
XP_006012627 238 TDYVQMLGELSEEQGFDVTYLDIEELSVNGQYQCLAELSTSPVTVCHGTGISCSNAHNDAAHNALQYLKIMA 309 coelacanth
B0V3F8       208 TDYIQMLLEISLELGFQVTYIDIDELTVNGQYQCLVELSTRPVTVCHGSGVTSSNAHNAAAHNALQYIKMVA 279 zebrafish
EMP26370     259 TDYVQLLGEVAEEQGFVITYLNIEELSVNGQYQCLAELSTKPVTVCHGTGISWGNAHNDAAHNALQYLKIMA 330 Green sea turtle
XP_007888271 249 SDYTQMLGEVVDEQRFDVTYLDIDELSVNGQYQCLAELSTQPVTVCHGTGISRGNAHNDAAHNALQYLKIMA 320 elephant shark
3334381      224 TDYVKMLKDVAEELDFNLTYLDIDELSVNGQYQCLAELSTNPITVCHGTGISCGNAHNDAAHNALQYLKIMC 295 African clawed frog

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