2W18


Conserved Protein Domain Family
PALB2_WD40

?
pfam16756: PALB2_WD40 (this model, PSSM-Id:374778 is obsolete and has been replaced by 435563)
Click on image for an interactive view with Cn3D
Partner and localizer of BRCA2 WD40 domain
This domain is found at the C-terminus of partner and localizer of BRCA2 (PALB2). It is a seven-bladed WD40-type beta-propeller. It binds to the N-terminus of BRCA2.
Statistics
?
PSSM-Id: 374778
Aligned: 7 rows
Threshold Bit Score: 616.824
Created: 25-Apr-2019
Updated: 18-Jul-2019
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
2W18_A          7 EQTETAELPAS---DSINPGNLQLVSELKNPS-GSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALDA-WQWEKLYT 81   human
EHH60245      836 EQTETAELPAS---DSVNPGNLQLVSKLKNPS-GSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALDA-WQWEKLYT 910  crab-eating m...
ELK12100      861 QQPGIADIPAC---DSVVPGDLQLVSRLKDPS-APCAVDVSALWWDVAGLKEPCIVTACEYAVSLWKPLDT-WQWEKIYS 935  black flying fox
XP_005998537 1031 ygqeninsPTCqghSDTNEETLKLISTLKNHS-HSCGVDLCSVWWDIDGRRRLNIVIACENSVSLWESLQE-NQWENTHT 1108 coelacanth
XP_002932499 1048 EQSCGSQHENPlwtS--EGGHLRLISQIQDGCfGKCMIDLCSVQWEFPSGTEMCIVGASESAISLWRPHSAgRQWEAAHS 1125 tropical claw...
XP_004945321  984 QKNTEAEQLTPvllDGLREENLQFISKLKDSS-GSCAVDVSSVWWGAAGYRELCVVTACESSVSLWKPQAP-DHWEKVYT 1061 chicken
XP_023353382  847 QTKVRGD-PVEiwhDTLELGNLQLVSKLKNPS-NSCSVDVSTVWWEVTGCKESCIITACEFTVSLWKSLDN-WQWRKVHT 923  Tasmanian devil
2W18_A         82 WHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEV 161  human
EHH60245      911 WHFTEVPVLQIVPVPDVYNLVCVALGNLEIREIRALLCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEV 990  crab-eating m...
ELK12100      936 WHFTEVPVLQIVPVPDVCDLVCVALGNLEIQEIRALLCPSDGESGKQVLLSSGHIQAVLGLTKRRLASSRGTLCDQQVEV 1015 black flying fox
XP_005998537 1109 WDFTEVPVIQIVSIPEAINLICVALGKLEIGEIRTLFYSREEGTFRQSLLRSGDMKIVLGLTDRRVVSCNSGYRKQNVEL 1188 coelacanth
XP_002932499 1126 WIFTEMPVIQILPLPGEKNIMCVALGNLEILEIWALFSCPRGLSWEQRVVKLGHTETARGLSKLRLVCSSGLGPNQEVEI 1205 tropical claw...
XP_004945321 1062 WQLGEIPVIQIIPVPDTCNLVCIALGNLEIGEIRLLLYSSENDSFKQSLVKSGNIKAVLGLRDGKLISSSRAMQEQQVEI 1141 chicken
XP_023353382  924 WHFTEIPVLQIIPLWDACNLVCVALGHLEIREIRLLFSSAEDECLKQSLVKSGNIKAVLGLRHKRLVCSNGTLHDHQVDL 1003 Tasmanian devil
2W18_A        162 MTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLF 241  human
EHH60245      991 MTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTVMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLF 1070 crab-eating m...
ELK12100     1016 MTFAEDGGSKEKRFLMPPEETILTFVEVQGMQDALLSTTVTNSIVIWNLKTGQLLKKMHIGDSYQASVCHKAYSEMGLLF 1095 black flying fox
XP_005998537 1189 ISLSEEGRNEGTLTLMSPGESILAFAEVDGEKDALIATTDLYNIVLWNIKTGQLLQSISIGNSYPTSLCLKAFSDSGLLF 1268 coelacanth
XP_002932499 1206 LQLSEKGRTMRSHTLQPPEASILSFSEVEGEADAVVGSTVDNKVVIWNGATGQLLSTINVGELCGDSACLSAYSDSGLLF 1285 tropical claw...
XP_004945321 1142 VSLSETGRCKDRQTLMPPEETVLAFAEVEGVRDALVGTTAVNSVVVWNLKTGQLLKKMHIGYSYPASICHRAYSDSGLLF 1221 chicken
XP_023353382 1004 MTFSGSGRSKEKQTLMSPEETILAFAEVQGMQDALLGTTLMSNIVIWNLKTGQLLKKMQIGNAYQASICHKAYSDMGLLF 1083 Tasmanian devil
2W18_A        242 IVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR--FLEGDVKDHCAAAILTSGTIAIWDLLLGQCtA 319  human
EHH60245     1071 IVLSHPCAKESESLQSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR--FLEGDVKDQCAAAILTSGTIAIWDLLLGQCtA 1148 crab-eating m...
ELK12100     1096 VVLSHPCAKESEPSGSPVFQLIAINPKTTLNVGVMLYCLPRGQTGRqvFLEGDVRDSSAAAVLTSGTVAVWNLLLGHC-A 1174 black flying fox
XP_005998537 1269 AILCNQHNNKSESSLDSVLKLVAINPKKGHNSQVLAYTLPAGFRGQ--YLDGDVSGQTVAAVLTSGAIVLWDLLYGHCtA 1346 coelacanth
XP_002932499 1286 LLLASPYSNSLEAARKCIFTLIAANPKSERCAHVMSYTLPEGQDGR--YLEGDIISHNAAAVLTSGSVAFWDLPRSHCsA 1363 tropical claw...
XP_004945321 1222 VVLSHPHAKESELCGNPAFRVIAFNPKTARSTGVMFSSLPPGHTGR--YLEGEVKDAWAAAVLTSGAIAVWDLLLGCCtA 1299 chicken
XP_023353382 1084 VVLSHPHGKEIESMGNPIFRLIVINPKTALSVDVRPYSLPQGHTGR--FLDGDVKDNLAAAVLTSGTIAVWDLFLGHCrA 1161 Tasmanian devil
2W18_A        320 LLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH 354  human
EHH60245     1149 LLPPISDQHWSFVKWSGTDSHLLAGQKDGNIFVYH 1183 crab-eating macaque
ELK12100     1175 VLPPVSGQSWSFVKWSGTHSHLLAGRKDGSIFVYL 1209 black flying fox
XP_005998537 1347 QLAPETDESWSLVRWANLDSCLLAGQKDGHVLIYE 1381 coelacanth
XP_002932499 1364 LLITNVDIHWSLVRWTHSMSQVLAGQKNGTIYIYS 1398 tropical clawed frog
XP_004945321 1300 LLPPGSDSRWTLVRWSAAGAGLLAGRADGSVCVYR 1334 chicken
XP_023353382 1162 LLLPNSDGNWSFVKWSGTDSCLLAGQKNGSVFVYS 1196 Tasmanian devil
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap